Wall clock time and date at job start Fri Apr 10 2020 14:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86794 * 120.00171 * 2 1 4 4 H 1.48497 * 109.47465 * 274.97831 * 3 2 1 5 5 H 1.48499 * 109.47362 * 34.97724 * 3 2 1 6 6 H 1.48507 * 109.47392 * 154.97723 * 3 2 1 7 7 C 1.39023 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99961 * 154.41129 * 7 2 1 9 9 N 1.36909 * 119.99927 * 334.41196 * 7 2 1 10 10 C 1.46499 * 120.00006 * 345.03522 * 9 7 2 11 11 C 1.50708 * 109.46727 * 97.64043 * 10 9 7 12 12 O 1.20823 * 120.00132 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99588 * 179.97438 * 11 10 9 14 14 C 1.34779 * 119.99519 * 165.03562 * 9 7 2 15 15 O 1.21603 * 120.00193 * 355.85250 * 14 9 7 16 16 C 1.47614 * 119.99368 * 176.12403 * 14 9 7 17 17 C 1.40993 * 125.97736 * 187.68603 * 16 14 9 18 18 C 1.36162 * 107.94784 * 179.71772 * 17 16 14 19 19 N 1.35822 * 107.32286 * 0.79670 * 18 17 16 20 20 N 1.31894 * 125.98416 * 7.99555 * 16 14 9 21 21 C 1.47427 * 108.06226 * 178.96335 * 19 18 17 22 22 C 1.54646 * 102.35519 * 344.74110 * 21 19 18 23 23 O 1.36121 * 140.86796 * 180.75660 * 18 17 16 24 24 H 0.97002 * 120.00220 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46978 * 217.63927 * 10 9 7 26 26 H 1.08993 * 109.46937 * 337.64410 * 10 9 7 27 27 H 0.96699 * 116.99837 * 179.97438 * 13 11 10 28 28 H 1.07999 * 126.01949 * 359.88567 * 17 16 14 29 29 H 1.09007 * 110.82740 * 102.96134 * 21 19 18 30 30 H 1.09000 * 110.83379 * 226.52597 * 21 19 18 31 31 H 1.09007 * 110.85111 * 266.65537 * 22 21 19 32 32 H 1.08997 * 111.02874 * 143.10638 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.3901 2.1071 -1.3947 5 1 1.5019 2.6200 0.8026 6 1 3.5941 1.4120 0.5922 7 6 2.0089 -1.2040 0.0005 8 1 3.0094 -1.2501 -0.4034 9 7 1.4250 -2.3313 0.5131 10 6 0.2257 -2.2204 1.3472 11 6 -0.9976 -2.4738 0.5042 12 8 -0.8797 -2.7220 -0.6723 13 8 -2.2181 -2.4248 1.0609 14 6 1.9535 -3.5429 0.2503 15 8 2.9033 -3.6416 -0.5026 16 6 1.3757 -4.7507 0.8719 17 6 1.9138 -6.0524 0.8098 18 6 1.0918 -6.8801 1.5121 19 7 0.0645 -6.1263 1.9823 20 7 0.2627 -4.8021 1.5777 21 6 -0.8501 -7.0124 2.7252 22 6 -0.3947 -8.4173 2.2667 23 8 0.9729 -8.1845 1.8828 24 1 -0.4850 0.8400 -0.0004 25 1 0.2724 -2.9560 2.1502 26 1 0.1715 -1.2191 1.7744 27 1 -2.9725 -2.5939 0.4801 28 1 2.8198 -6.3414 0.2980 29 1 -0.7167 -6.8933 3.8005 30 1 -1.8857 -6.8282 2.4394 31 1 -0.9842 -8.7576 1.4152 32 1 -0.4510 -9.1336 3.0863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069060.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:54 Heat of formation + Delta-G solvation = -25.191404 kcal Electronic energy + Delta-G solvation = -22657.161159 eV Core-core repulsion = 19008.620946 eV Total energy + Delta-G solvation = -3648.540212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.00068 -39.46860 -38.50687 -37.50304 -35.18488 -34.47529 -33.10136 -31.89406 -29.68127 -28.50555 -27.61197 -25.51786 -23.69957 -22.11377 -21.11474 -20.96518 -18.91416 -17.47586 -17.14860 -16.87057 -16.60463 -16.22219 -15.55063 -15.30162 -14.88273 -14.57694 -14.32016 -14.15952 -13.98622 -13.56834 -12.99557 -12.77466 -12.55287 -12.29376 -11.87543 -11.73597 -11.68409 -11.19813 -10.99525 -10.55028 -10.40391 -10.34058 -10.01965 -9.61653 -9.03473 -8.84291 -8.73690 -8.22128 -7.96350 -6.55969 -3.91224 1.78783 2.14292 2.56046 2.95559 3.16382 3.22577 3.30128 3.64478 3.87648 3.94112 4.12030 4.39739 4.44989 4.60484 4.72995 4.90167 5.07513 5.15226 5.24282 5.51590 5.67678 5.93780 6.14700 6.31480 6.51679 6.59798 6.83735 7.11372 7.45694 7.58543 7.82267 7.97577 8.31340 8.99398 9.09929 9.24880 9.78325 10.51520 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.005928 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.698563 B = 4722.376146 C = 5417.318068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.033 3.967 3 Si 0.930 3.070 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.305 4.305 8 H 0.115 0.885 9 N -0.402 5.402 10 C 0.136 3.864 11 C 0.505 3.495 12 O -0.510 6.510 13 O -0.532 6.532 14 C 0.518 3.482 15 O -0.564 6.564 16 C 0.089 3.911 17 C -0.217 4.217 18 C 0.222 3.778 19 N -0.426 5.426 20 N -0.239 5.239 21 C 0.100 3.900 22 C 0.041 3.959 23 O -0.284 6.284 24 H 0.274 0.726 25 H 0.104 0.896 26 H 0.125 0.875 27 H 0.389 0.611 28 H 0.160 0.840 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.905 -11.085 8.921 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.173 4.173 3 Si 0.755 3.245 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.433 4.433 8 H 0.133 0.867 9 N -0.119 5.119 10 C 0.009 3.991 11 C 0.346 3.654 12 O -0.395 6.395 13 O -0.343 6.343 14 C 0.305 3.695 15 O -0.446 6.446 16 C -0.077 4.077 17 C -0.247 4.247 18 C 0.055 3.945 19 N -0.222 5.222 20 N -0.069 5.069 21 C -0.021 4.021 22 C -0.035 4.035 23 O -0.191 6.191 24 H 0.084 0.916 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.245 0.755 28 H 0.178 0.822 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.108 0.892 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.131 -10.494 9.019 15.134 hybrid contribution -0.132 0.172 -0.701 0.734 sum -6.262 -10.321 8.318 14.661 Atomic orbital electron populations 1.69955 1.06368 1.28419 1.45240 1.25357 0.95247 1.00337 0.96334 0.85861 0.79778 0.80220 0.78594 1.20214 1.20574 1.18901 1.19829 1.00172 0.83783 1.39484 0.86750 1.43355 1.21633 1.05176 1.41760 1.20956 0.81280 1.05014 0.91822 1.23474 0.83586 0.70758 0.87581 1.90604 1.86339 1.44989 1.17606 1.84510 1.17263 1.85190 1.47308 1.16540 0.87253 0.80527 0.85151 1.90642 1.30610 1.84351 1.38975 1.22559 0.92673 0.95704 0.96765 1.20050 1.05285 0.89756 1.09631 1.20759 0.93896 0.81869 0.97963 1.50841 1.20871 1.06632 1.43853 1.78003 1.18867 0.90473 1.19555 1.23082 0.95323 0.86194 0.97523 1.24378 0.80811 0.96399 1.01906 1.87084 1.28184 1.21870 1.81992 0.91576 0.87897 0.85764 0.75513 0.82224 0.88195 0.87486 0.89241 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.76 9.68 55.50 0.54 -22.23 16 2 C 0.03 0.85 4.77 -17.45 -0.08 0.76 16 3 Si 0.93 20.04 29.62 -169.99 -5.04 15.00 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.30 -8.48 9.31 -14.99 -0.14 -8.62 16 8 H 0.11 3.27 7.41 -52.49 -0.39 2.88 16 9 N -0.40 -10.75 2.20 -117.25 -0.26 -11.01 16 10 C 0.14 3.22 4.79 -5.19 -0.02 3.20 16 11 C 0.51 12.11 5.54 36.01 0.20 12.31 16 12 O -0.51 -14.20 16.87 -18.75 -0.32 -14.51 16 13 O -0.53 -10.40 13.42 -39.26 -0.53 -10.92 16 14 C 0.52 13.84 7.33 -12.43 -0.09 13.75 16 15 O -0.56 -16.42 16.56 5.27 0.09 -16.34 16 16 C 0.09 2.05 6.74 -82.97 -0.56 1.49 16 17 C -0.22 -4.35 10.61 -39.29 -0.42 -4.76 16 18 C 0.22 3.78 8.32 -16.53 -0.14 3.65 16 19 N -0.43 -7.07 5.01 -59.63 -0.30 -7.37 16 20 N -0.24 -4.95 8.41 33.31 0.28 -4.67 16 21 C 0.10 0.98 8.10 -2.67 -0.02 0.96 16 22 C 0.04 0.33 8.08 38.02 0.31 0.64 16 23 O -0.28 -3.81 11.19 -20.12 -0.23 -4.04 16 24 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.10 2.24 5.49 -51.93 -0.29 1.96 16 26 H 0.12 2.97 6.26 -51.93 -0.32 2.64 16 27 H 0.39 5.92 9.10 45.56 0.41 6.33 16 28 H 0.16 3.01 8.06 -52.49 -0.42 2.59 16 29 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 285.08 15.07 4.30 4.30 Total: -1.00 -36.56 285.08 -4.26 -40.82 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -1.83 Total: 7.59 kcal Atomic # 6 Polarization: 24.34 SS G_CDS: -0.97 Total: 23.37 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.26 Total: -45.27 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -0.98 Total: -45.81 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.04 Total: 15.00 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -36.56 -4.26 -40.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069060.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.630 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds