Wall clock time and date at job start Fri Apr 10 2020 14:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86794 * 120.00171 * 2 1 4 4 H 1.48497 * 109.47465 * 274.97831 * 3 2 1 5 5 H 1.48499 * 109.47362 * 34.97724 * 3 2 1 6 6 H 1.48507 * 109.47392 * 154.97723 * 3 2 1 7 7 C 1.39023 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99961 * 154.41129 * 7 2 1 9 9 N 1.36909 * 119.99927 * 334.41196 * 7 2 1 10 10 C 1.46499 * 120.00006 * 345.03522 * 9 7 2 11 11 C 1.50708 * 109.46727 * 97.64043 * 10 9 7 12 12 O 1.20823 * 120.00132 * 0.02562 * 11 10 9 13 13 O 1.34231 * 119.99588 * 179.97438 * 11 10 9 14 14 C 1.34779 * 119.99519 * 165.03562 * 9 7 2 15 15 O 1.21603 * 120.00193 * 355.85250 * 14 9 7 16 16 C 1.47614 * 119.99368 * 176.12403 * 14 9 7 17 17 C 1.40993 * 125.97736 * 187.68603 * 16 14 9 18 18 C 1.36162 * 107.94784 * 179.71772 * 17 16 14 19 19 N 1.35822 * 107.32286 * 0.79670 * 18 17 16 20 20 N 1.31894 * 125.98416 * 7.99555 * 16 14 9 21 21 C 1.47427 * 108.06226 * 178.96335 * 19 18 17 22 22 C 1.54646 * 102.35519 * 344.74110 * 21 19 18 23 23 O 1.36121 * 140.86796 * 180.75660 * 18 17 16 24 24 H 0.97002 * 120.00220 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46978 * 217.63927 * 10 9 7 26 26 H 1.08993 * 109.46937 * 337.64410 * 10 9 7 27 27 H 0.96699 * 116.99837 * 179.97438 * 13 11 10 28 28 H 1.07999 * 126.01949 * 359.88567 * 17 16 14 29 29 H 1.09007 * 110.82740 * 102.96134 * 21 19 18 30 30 H 1.09000 * 110.83379 * 226.52597 * 21 19 18 31 31 H 1.09007 * 110.85111 * 266.65537 * 22 21 19 32 32 H 1.08997 * 111.02874 * 143.10638 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.3901 2.1071 -1.3947 5 1 1.5019 2.6200 0.8026 6 1 3.5941 1.4120 0.5922 7 6 2.0089 -1.2040 0.0005 8 1 3.0094 -1.2501 -0.4034 9 7 1.4250 -2.3313 0.5131 10 6 0.2257 -2.2204 1.3472 11 6 -0.9976 -2.4738 0.5042 12 8 -0.8797 -2.7220 -0.6723 13 8 -2.2181 -2.4248 1.0609 14 6 1.9535 -3.5429 0.2503 15 8 2.9033 -3.6416 -0.5026 16 6 1.3757 -4.7507 0.8719 17 6 1.9138 -6.0524 0.8098 18 6 1.0918 -6.8801 1.5121 19 7 0.0645 -6.1263 1.9823 20 7 0.2627 -4.8021 1.5777 21 6 -0.8501 -7.0124 2.7252 22 6 -0.3947 -8.4173 2.2667 23 8 0.9729 -8.1845 1.8828 24 1 -0.4850 0.8400 -0.0004 25 1 0.2724 -2.9560 2.1502 26 1 0.1715 -1.2191 1.7744 27 1 -2.9725 -2.5939 0.4801 28 1 2.8198 -6.3414 0.2980 29 1 -0.7167 -6.8933 3.8005 30 1 -1.8857 -6.8282 2.4394 31 1 -0.9842 -8.7576 1.4152 32 1 -0.4510 -9.1336 3.0863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069060.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:54 Heat of formation + Delta-G solvation = -55.248266 kcal Electronic energy + Delta-G solvation = -22658.464522 eV Core-core repulsion = 19008.620946 eV Total energy + Delta-G solvation = -3649.843576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.28710 -41.28190 -40.15821 -39.10944 -37.09013 -36.42785 -34.30168 -33.80980 -31.04526 -29.82035 -29.51264 -27.34650 -24.96279 -23.54748 -22.77139 -22.43476 -20.63098 -19.14195 -18.79665 -18.53984 -18.07130 -17.65271 -17.21311 -16.86090 -16.36372 -16.22756 -16.08453 -15.73863 -15.52035 -14.88420 -14.67080 -14.27855 -13.90069 -13.73931 -13.60115 -13.51251 -13.08937 -12.74617 -12.49300 -12.22595 -12.17675 -12.07524 -11.68898 -11.60439 -10.99312 -10.83637 -10.16527 -9.98839 -9.60794 -8.54359 -6.00431 0.25568 0.88996 1.06213 1.43756 1.45935 1.60759 1.75329 1.85258 2.16194 2.31507 2.53013 2.84342 3.06627 3.16792 3.49784 3.87088 3.89200 4.17093 4.30254 4.37806 4.51003 4.52940 4.64340 4.69744 4.82603 4.85707 5.25969 5.39931 5.81112 5.90090 5.96038 6.27303 6.47092 6.96136 7.16089 7.40772 7.77922 8.52929 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.005928 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.698563 B = 4722.376146 C = 5417.318068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.004 3.996 3 Si 1.001 2.999 4 H -0.278 1.278 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.350 4.350 8 H 0.091 0.909 9 N -0.412 5.412 10 C 0.139 3.861 11 C 0.515 3.485 12 O -0.555 6.555 13 O -0.515 6.515 14 C 0.505 3.495 15 O -0.609 6.609 16 C 0.061 3.939 17 C -0.248 4.248 18 C 0.246 3.754 19 N -0.415 5.415 20 N -0.251 5.251 21 C 0.085 3.915 22 C 0.041 3.959 23 O -0.287 6.287 24 H 0.281 0.719 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.412 0.588 28 H 0.156 0.844 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 -12.244 11.023 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.200 4.200 3 Si 0.823 3.177 4 H -0.204 1.204 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.477 4.477 8 H 0.109 0.891 9 N -0.129 5.129 10 C 0.013 3.987 11 C 0.358 3.642 12 O -0.444 6.444 13 O -0.327 6.327 14 C 0.293 3.707 15 O -0.494 6.494 16 C -0.104 4.104 17 C -0.279 4.279 18 C 0.076 3.924 19 N -0.212 5.212 20 N -0.082 5.082 21 C -0.033 4.033 22 C -0.034 4.034 23 O -0.194 6.194 24 H 0.091 0.909 25 H 0.140 0.860 26 H 0.138 0.862 27 H 0.271 0.729 28 H 0.174 0.826 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.125 0.875 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.319 -11.670 11.170 18.170 hybrid contribution 0.304 0.304 -1.242 1.314 sum -8.015 -11.366 9.928 17.088 Atomic orbital electron populations 1.70005 1.07411 1.29646 1.44547 1.26226 0.96087 1.02912 0.94758 0.84834 0.78618 0.75763 0.78505 1.20418 1.18458 1.18713 1.19845 1.00103 0.85461 1.42316 0.89143 1.43505 1.22451 1.05039 1.41883 1.21006 0.80547 1.05287 0.91824 1.23371 0.84624 0.69525 0.86698 1.90589 1.87170 1.47226 1.19457 1.84428 1.16724 1.84346 1.47165 1.17126 0.86880 0.81737 0.84913 1.90568 1.32430 1.85445 1.40975 1.21942 0.94309 0.95101 0.98999 1.20020 1.06426 0.89695 1.11710 1.20527 0.92559 0.83379 0.95940 1.51255 1.21762 1.05437 1.42777 1.77743 1.17872 0.93205 1.19414 1.23823 0.95504 0.85329 0.98620 1.24955 0.77845 0.96187 1.04378 1.87127 1.31631 1.19225 1.81384 0.90855 0.86048 0.86152 0.72912 0.82639 0.85286 0.85097 0.87534 0.80689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.63 9.68 21.68 0.21 -46.42 16 2 C 0.00 0.22 4.77 84.95 0.41 0.62 16 3 Si 1.00 41.48 29.62 68.60 2.03 43.51 16 4 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.35 -20.43 9.31 84.09 0.78 -19.64 16 8 H 0.09 5.55 7.41 -2.91 -0.02 5.53 16 9 N -0.41 -23.10 2.20 -643.12 -1.42 -24.51 16 10 C 0.14 6.72 4.79 85.64 0.41 7.13 16 11 C 0.51 24.71 5.54 71.24 0.40 25.11 16 12 O -0.55 -31.51 16.87 21.97 0.37 -31.14 16 13 O -0.51 -19.22 13.42 -51.43 -0.69 -19.91 16 14 C 0.50 28.61 7.33 86.72 0.64 29.25 16 15 O -0.61 -38.15 16.56 -4.04 -0.07 -38.22 16 16 C 0.06 2.88 6.74 42.29 0.29 3.17 16 17 C -0.25 -10.21 10.61 22.46 0.24 -9.97 16 18 C 0.25 7.99 8.32 83.59 0.70 8.69 16 19 N -0.41 -12.78 5.01 -453.32 -2.27 -15.06 16 20 N -0.25 -10.29 8.41 -48.53 -0.41 -10.70 16 21 C 0.09 1.26 8.10 86.76 0.70 1.96 16 22 C 0.04 0.44 8.08 72.54 0.59 1.02 16 23 O -0.29 -6.71 11.19 -94.92 -1.06 -7.77 16 24 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 25 H 0.12 5.33 5.49 -2.39 -0.01 5.32 16 26 H 0.12 5.82 6.26 -2.39 -0.01 5.81 16 27 H 0.41 11.59 9.10 -74.06 -0.67 10.91 16 28 H 0.16 6.26 8.06 -2.91 -0.02 6.23 16 29 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.18 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -84.91 285.08 2.36 -82.55 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.53 Total: 20.34 kcal Atomic # 6 Polarization: 42.19 SS G_CDS: 5.14 Total: 47.33 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -3.88 Total: -96.69 kcal Atomic # 8 Polarization: -95.59 SS G_CDS: -1.45 Total: -97.04 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -84.91 2.36 -82.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069060.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.305 kcal (2) G-P(sol) polarization free energy of solvation -84.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds