Wall clock time and date at job start Fri Apr 10 2020 14:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31287 * 1 3 3 Si 1.86807 * 119.99821 * 2 1 4 4 H 1.48498 * 109.46886 * 240.00002 * 3 2 1 5 5 H 1.48495 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47127 * 119.99529 * 3 2 1 7 7 C 1.39167 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99775 * 198.44088 * 7 2 1 9 9 N 1.36668 * 120.00198 * 18.44304 * 7 2 1 10 10 C 1.46505 * 119.99920 * 38.03319 * 9 7 2 11 11 C 1.50694 * 109.46985 * 91.41585 * 10 9 7 12 12 O 1.20819 * 120.00419 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99879 * 179.97438 * 11 10 9 14 14 C 1.34772 * 120.00161 * 218.03578 * 9 7 2 15 15 O 1.21679 * 120.00154 * 1.69053 * 14 9 7 16 16 C 1.47079 * 120.00047 * 181.69083 * 14 9 7 17 17 C 1.38103 * 125.90975 * 189.25464 * 16 14 9 18 18 C 1.39347 * 107.48101 * 179.74127 * 17 16 14 19 19 C 1.38011 * 107.49606 * 0.42428 * 18 17 16 20 20 C 1.47193 * 125.90318 * 179.83994 * 19 18 17 21 21 N 1.34769 * 120.00527 * 179.68755 * 20 19 18 22 22 O 1.21627 * 119.99689 * 359.69256 * 20 19 18 23 23 N 1.36821 * 125.90932 * 9.26304 * 16 14 9 24 24 H 0.96999 * 125.68221 * 359.97438 * 23 16 14 25 25 H 0.96995 * 120.00461 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46909 * 211.42330 * 10 9 7 27 27 H 1.09007 * 109.47101 * 331.41916 * 10 9 7 28 28 H 0.96700 * 116.99806 * 180.02562 * 13 11 10 29 29 H 1.07999 * 126.26165 * 359.97438 * 17 16 14 30 30 H 1.07996 * 126.25374 * 180.25900 * 18 17 16 31 31 H 0.96999 * 120.00470 * 179.97438 * 21 20 19 32 32 H 0.97005 * 119.99842 * 359.73158 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1006 1.6965 -1.2125 5 1 1.2818 2.7464 -0.0006 6 1 3.1005 1.6966 1.2125 7 6 2.0088 -1.2052 0.0005 8 1 3.0471 -1.2290 0.2964 9 7 1.3781 -2.3586 -0.3734 10 6 0.4110 -2.3411 -1.4737 11 6 1.1191 -2.6417 -2.7696 12 8 2.3092 -2.8497 -2.7736 13 8 0.4273 -2.6794 -3.9193 14 6 1.6459 -3.5121 0.2701 15 8 2.4259 -3.5209 1.2040 16 6 0.9952 -4.7603 -0.1564 17 6 1.0364 -5.9659 0.5159 18 6 0.2893 -6.8822 -0.2216 19 6 -0.1885 -6.2254 -1.3374 20 6 -1.0248 -6.8164 -2.3948 21 7 -1.4317 -6.0605 -3.4337 22 8 -1.3486 -7.9870 -2.3310 23 7 0.2446 -4.9279 -1.2879 24 1 0.0512 -4.2415 -1.9455 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3560 -3.0947 -1.2953 27 1 -0.0536 -1.3568 -1.5334 28 1 0.9248 -2.8766 -4.7247 29 1 1.5502 -6.1617 1.4455 30 1 0.1179 -7.9179 0.0320 31 1 -1.9825 -6.4500 -4.1307 32 1 -1.1768 -5.1258 -3.4826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069910.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:48 Heat of formation + Delta-G solvation = -85.081536 kcal Electronic energy + Delta-G solvation = -22583.846448 eV Core-core repulsion = 18932.709204 eV Total energy + Delta-G solvation = -3651.137243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.53756 -39.98133 -38.94413 -37.99441 -35.98227 -35.10495 -33.84670 -32.38378 -30.83060 -29.28705 -28.24028 -25.56753 -23.40901 -21.86536 -21.09646 -20.61624 -19.57264 -18.11887 -17.93916 -17.45586 -16.96475 -16.60054 -16.07099 -15.64328 -15.12009 -15.08045 -14.47567 -14.17749 -14.03799 -13.78885 -13.18562 -13.05596 -12.63620 -12.40217 -12.39463 -11.86127 -11.70692 -11.34843 -11.06973 -10.91083 -10.57826 -10.34158 -10.33171 -9.88176 -9.37452 -9.03262 -8.85449 -8.08568 -7.91532 -6.69757 -4.34733 1.32408 2.34173 2.51729 2.98131 3.08085 3.10851 3.15227 3.18971 3.42761 3.44939 3.84846 4.10658 4.38198 4.81425 4.87964 5.10871 5.16365 5.50134 5.53162 5.64967 6.14959 6.24379 6.34640 6.59243 6.60610 6.75403 7.06100 7.14660 7.28700 7.38008 7.84027 8.02452 8.11666 8.13408 8.75117 8.91809 9.49822 10.35597 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.006269 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.037012 B = 4465.444655 C = 5154.728393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.036 3.964 3 Si 0.929 3.071 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.305 4.305 8 H 0.102 0.898 9 N -0.415 5.415 10 C 0.084 3.916 11 C 0.430 3.570 12 O -0.485 6.485 13 O -0.529 6.529 14 C 0.532 3.468 15 O -0.539 6.539 16 C 0.032 3.968 17 C -0.148 4.148 18 C -0.107 4.107 19 C -0.064 4.064 20 C 0.597 3.403 21 N -0.857 5.857 22 O -0.535 6.535 23 N -0.536 5.536 24 H 0.414 0.586 25 H 0.277 0.723 26 H 0.097 0.903 27 H 0.165 0.835 28 H 0.403 0.597 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.407 0.593 32 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 -4.267 -8.333 10.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.169 4.169 3 Si 0.755 3.245 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.432 4.432 8 H 0.119 0.881 9 N -0.135 5.135 10 C -0.043 4.043 11 C 0.269 3.731 12 O -0.370 6.370 13 O -0.341 6.341 14 C 0.321 3.679 15 O -0.419 6.419 16 C -0.087 4.087 17 C -0.173 4.173 18 C -0.134 4.134 19 C -0.178 4.178 20 C 0.384 3.616 21 N -0.420 5.420 22 O -0.411 6.411 23 N -0.144 5.144 24 H 0.261 0.739 25 H 0.087 0.913 26 H 0.114 0.886 27 H 0.182 0.818 28 H 0.261 0.739 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.238 0.762 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.376 -4.725 -7.411 9.818 hybrid contribution 0.374 1.431 -1.432 2.059 sum -4.002 -3.294 -8.844 10.251 Atomic orbital electron populations 1.69677 1.06229 1.28795 1.46014 1.25556 0.95444 1.00464 0.95451 0.85929 0.79242 0.79712 0.79653 1.19635 1.20573 1.19114 1.19503 0.96073 0.82776 1.44888 0.88087 1.42890 1.38013 1.07785 1.24773 1.21764 0.92413 1.08880 0.81250 1.25288 0.87726 0.73677 0.86372 1.90738 1.16359 1.43048 1.86851 1.84589 1.46829 1.84242 1.18466 1.17286 0.85019 0.81743 0.83861 1.90708 1.37055 1.84832 1.29276 1.21443 1.00098 0.97845 0.89335 1.21226 1.03810 0.90474 1.01830 1.21216 0.99258 0.99794 0.93131 1.20422 1.10083 0.85754 1.01581 1.17163 0.78428 0.85546 0.80456 1.43746 1.56982 1.14862 1.26442 1.90838 1.57183 1.15704 1.77398 1.43431 1.40269 1.10111 1.20607 0.73913 0.91272 0.88586 0.81839 0.73875 0.82772 0.83062 0.76191 0.77475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.97 11.32 55.51 0.63 -20.34 16 2 C 0.04 0.87 5.02 -17.44 -0.09 0.78 16 3 Si 0.93 19.21 29.59 -169.99 -5.03 14.18 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.30 -7.95 8.89 -15.05 -0.13 -8.08 16 8 H 0.10 2.77 7.77 -52.49 -0.41 2.37 16 9 N -0.42 -9.97 2.00 -117.45 -0.24 -10.21 16 10 C 0.08 1.65 5.08 -5.19 -0.03 1.62 16 11 C 0.43 7.53 6.47 36.00 0.23 7.76 16 12 O -0.49 -10.25 17.18 -18.74 -0.32 -10.57 16 13 O -0.53 -6.30 13.42 -39.27 -0.53 -6.82 16 14 C 0.53 12.94 7.59 -12.68 -0.10 12.84 16 15 O -0.54 -14.71 16.77 5.21 0.09 -14.62 16 16 C 0.03 0.64 6.64 -82.10 -0.55 0.09 16 17 C -0.15 -2.67 10.62 -39.22 -0.42 -3.09 16 18 C -0.11 -1.74 10.60 -39.25 -0.42 -2.16 16 19 C -0.06 -1.02 7.04 -82.06 -0.58 -1.60 16 20 C 0.60 8.74 8.08 -12.63 -0.10 8.64 16 21 N -0.86 -8.72 8.87 30.38 0.27 -8.46 16 22 O -0.53 -9.29 17.71 5.25 0.09 -9.19 16 23 N -0.54 -8.99 4.80 -5.88 -0.03 -9.02 16 24 H 0.41 6.31 2.86 -40.82 -0.12 6.19 16 25 H 0.28 6.26 8.31 -40.82 -0.34 5.92 16 26 H 0.10 1.66 4.86 -51.93 -0.25 1.41 16 27 H 0.17 3.39 5.44 -51.92 -0.28 3.11 16 28 H 0.40 3.05 9.10 45.56 0.41 3.47 16 29 H 0.15 2.61 8.06 -52.49 -0.42 2.18 16 30 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.41 3.22 8.93 -40.82 -0.36 2.85 16 32 H 0.40 3.51 7.93 -40.82 -0.32 3.18 16 LS Contribution 290.32 15.07 4.38 4.38 Total: -1.00 -32.87 290.32 -4.17 -37.04 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -1.31 Total: 16.82 kcal Atomic # 6 Polarization: 18.99 SS G_CDS: -2.17 Total: 16.82 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.63 Total: -48.02 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -0.67 Total: -41.21 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.87 -4.17 -37.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069910.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.042 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds