Wall clock time and date at job start Fri Apr 10 2020 14:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31287 * 1 3 3 Si 1.86807 * 119.99821 * 2 1 4 4 H 1.48498 * 109.46886 * 240.00002 * 3 2 1 5 5 H 1.48495 * 109.46929 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47127 * 119.99529 * 3 2 1 7 7 C 1.39167 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99775 * 198.44088 * 7 2 1 9 9 N 1.36668 * 120.00198 * 18.44304 * 7 2 1 10 10 C 1.46505 * 119.99920 * 38.03319 * 9 7 2 11 11 C 1.50694 * 109.46985 * 91.41585 * 10 9 7 12 12 O 1.20819 * 120.00419 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99879 * 179.97438 * 11 10 9 14 14 C 1.34772 * 120.00161 * 218.03578 * 9 7 2 15 15 O 1.21679 * 120.00154 * 1.69053 * 14 9 7 16 16 C 1.47079 * 120.00047 * 181.69083 * 14 9 7 17 17 C 1.38103 * 125.90975 * 189.25464 * 16 14 9 18 18 C 1.39347 * 107.48101 * 179.74127 * 17 16 14 19 19 C 1.38011 * 107.49606 * 0.42428 * 18 17 16 20 20 C 1.47193 * 125.90318 * 179.83994 * 19 18 17 21 21 N 1.34769 * 120.00527 * 179.68755 * 20 19 18 22 22 O 1.21627 * 119.99689 * 359.69256 * 20 19 18 23 23 N 1.36821 * 125.90932 * 9.26304 * 16 14 9 24 24 H 0.96999 * 125.68221 * 359.97438 * 23 16 14 25 25 H 0.96995 * 120.00461 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46909 * 211.42330 * 10 9 7 27 27 H 1.09007 * 109.47101 * 331.41916 * 10 9 7 28 28 H 0.96700 * 116.99806 * 180.02562 * 13 11 10 29 29 H 1.07999 * 126.26165 * 359.97438 * 17 16 14 30 30 H 1.07996 * 126.25374 * 180.25900 * 18 17 16 31 31 H 0.96999 * 120.00470 * 179.97438 * 21 20 19 32 32 H 0.97005 * 119.99842 * 359.73158 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1006 1.6965 -1.2125 5 1 1.2818 2.7464 -0.0006 6 1 3.1005 1.6966 1.2125 7 6 2.0088 -1.2052 0.0005 8 1 3.0471 -1.2290 0.2964 9 7 1.3781 -2.3586 -0.3734 10 6 0.4110 -2.3411 -1.4737 11 6 1.1191 -2.6417 -2.7696 12 8 2.3092 -2.8497 -2.7736 13 8 0.4273 -2.6794 -3.9193 14 6 1.6459 -3.5121 0.2701 15 8 2.4259 -3.5209 1.2040 16 6 0.9952 -4.7603 -0.1564 17 6 1.0364 -5.9659 0.5159 18 6 0.2893 -6.8822 -0.2216 19 6 -0.1885 -6.2254 -1.3374 20 6 -1.0248 -6.8164 -2.3948 21 7 -1.4317 -6.0605 -3.4337 22 8 -1.3486 -7.9870 -2.3310 23 7 0.2446 -4.9279 -1.2879 24 1 0.0512 -4.2415 -1.9455 25 1 -0.4850 0.8400 -0.0004 26 1 -0.3560 -3.0947 -1.2953 27 1 -0.0536 -1.3568 -1.5334 28 1 0.9248 -2.8766 -4.7247 29 1 1.5502 -6.1617 1.4455 30 1 0.1179 -7.9179 0.0320 31 1 -1.9825 -6.4500 -4.1307 32 1 -1.1768 -5.1258 -3.4826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069910.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:48 Heat of formation + Delta-G solvation = -112.111887 kcal Electronic energy + Delta-G solvation = -22585.018572 eV Core-core repulsion = 18932.709204 eV Total energy + Delta-G solvation = -3652.309367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.96754 -41.36659 -40.30954 -39.56426 -37.37690 -36.81961 -34.93304 -34.16521 -32.30068 -30.73786 -29.83120 -27.32109 -24.84885 -23.27972 -22.57579 -22.00609 -20.86376 -19.62822 -19.30178 -19.08968 -18.27118 -17.90150 -17.55652 -17.12330 -16.80028 -16.38236 -16.05133 -15.64840 -15.54580 -15.14136 -14.76592 -14.54345 -14.17478 -13.83175 -13.75240 -13.45814 -13.39887 -12.85798 -12.79280 -12.59744 -12.17007 -11.86217 -11.59319 -11.19531 -10.89400 -10.88912 -10.21893 -9.84445 -9.42212 -8.54159 -6.27917 -0.06894 0.91883 1.09159 1.38879 1.41787 1.49969 1.66376 1.82323 2.16615 2.20858 2.35857 2.37839 2.68313 2.99587 3.52744 3.68245 3.77237 4.16835 4.18839 4.31105 4.63390 4.79045 5.03739 5.32420 5.36866 5.44720 5.68941 5.74736 5.89732 6.03542 6.21754 6.24757 6.82616 6.91350 7.06717 7.08091 7.66872 8.50549 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.006269 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.037012 B = 4465.444655 C = 5154.728393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.011 3.989 3 Si 0.986 3.014 4 H -0.269 1.269 5 H -0.262 1.262 6 H -0.274 1.274 7 C -0.344 4.344 8 H 0.070 0.930 9 N -0.426 5.426 10 C 0.082 3.918 11 C 0.446 3.554 12 O -0.525 6.525 13 O -0.499 6.499 14 C 0.519 3.481 15 O -0.591 6.591 16 C -0.006 4.006 17 C -0.140 4.140 18 C -0.112 4.112 19 C -0.047 4.047 20 C 0.601 3.399 21 N -0.830 5.830 22 O -0.560 6.560 23 N -0.524 5.524 24 H 0.419 0.581 25 H 0.285 0.715 26 H 0.119 0.881 27 H 0.156 0.844 28 H 0.430 0.570 29 H 0.158 0.842 30 H 0.175 0.825 31 H 0.423 0.577 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 -4.402 -10.490 13.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.193 4.193 3 Si 0.809 3.191 4 H -0.194 1.194 5 H -0.186 1.186 6 H -0.199 1.199 7 C -0.471 4.471 8 H 0.088 0.912 9 N -0.144 5.144 10 C -0.044 4.044 11 C 0.287 3.713 12 O -0.413 6.413 13 O -0.313 6.313 14 C 0.309 3.691 15 O -0.475 6.475 16 C -0.123 4.123 17 C -0.166 4.166 18 C -0.138 4.138 19 C -0.163 4.163 20 C 0.386 3.614 21 N -0.395 5.395 22 O -0.438 6.438 23 N -0.132 5.132 24 H 0.267 0.733 25 H 0.096 0.904 26 H 0.136 0.864 27 H 0.173 0.827 28 H 0.293 0.707 29 H 0.176 0.824 30 H 0.192 0.808 31 H 0.257 0.743 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.149 -4.821 -9.669 12.432 hybrid contribution 0.782 1.404 -0.884 1.834 sum -5.368 -3.417 -10.553 12.323 Atomic orbital electron populations 1.69710 1.06746 1.29950 1.45183 1.26186 0.96289 1.02444 0.94404 0.85104 0.78328 0.76566 0.79134 1.19442 1.18585 1.19949 1.19380 0.95466 0.84553 1.47737 0.91202 1.42993 1.38163 1.07224 1.26001 1.21763 0.91944 1.09195 0.81516 1.24549 0.86727 0.72873 0.87165 1.90747 1.17942 1.45028 1.87564 1.84484 1.45711 1.83123 1.18010 1.17852 0.84697 0.83128 0.83389 1.90640 1.39391 1.85960 1.31472 1.20903 1.02907 0.96858 0.91681 1.21433 1.03165 0.90164 1.01837 1.21477 0.98863 1.00602 0.92873 1.20822 1.08715 0.85038 1.01708 1.16955 0.78299 0.85294 0.80881 1.43517 1.55699 1.14991 1.25273 1.90845 1.58168 1.16798 1.78018 1.43210 1.39634 1.10579 1.19795 0.73274 0.90442 0.86444 0.82722 0.70714 0.82434 0.80764 0.74317 0.76281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.13 11.32 21.70 0.25 -41.89 16 2 C 0.01 0.54 5.02 85.00 0.43 0.97 16 3 Si 0.99 39.44 29.59 68.60 2.03 41.47 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.34 -18.67 8.89 84.16 0.75 -17.92 16 8 H 0.07 4.12 7.77 -2.91 -0.02 4.10 16 9 N -0.43 -21.09 2.00 -643.74 -1.29 -22.38 16 10 C 0.08 3.18 5.08 85.63 0.44 3.62 16 11 C 0.45 14.98 6.47 71.23 0.46 15.44 16 12 O -0.52 -22.00 17.18 21.99 0.38 -21.62 16 13 O -0.50 -10.09 13.42 -51.45 -0.69 -10.78 16 14 C 0.52 26.31 7.59 86.56 0.66 26.96 16 15 O -0.59 -34.28 16.77 -4.28 -0.07 -34.35 16 16 C -0.01 -0.23 6.64 40.65 0.27 0.04 16 17 C -0.14 -5.03 10.62 22.50 0.24 -4.79 16 18 C -0.11 -3.44 10.60 22.48 0.24 -3.20 16 19 C -0.05 -1.39 7.04 40.66 0.29 -1.11 16 20 C 0.60 15.65 8.08 86.60 0.70 16.35 16 21 N -0.83 -13.63 8.87 -176.06 -1.56 -15.19 16 22 O -0.56 -17.81 17.71 -4.12 -0.07 -17.88 16 23 N -0.52 -16.81 4.80 -172.52 -0.83 -17.64 16 24 H 0.42 11.93 2.86 -92.71 -0.26 11.67 16 25 H 0.29 12.57 8.31 -92.71 -0.77 11.80 16 26 H 0.12 3.93 4.86 -2.39 -0.01 3.91 16 27 H 0.16 6.33 5.44 -2.38 -0.01 6.32 16 28 H 0.43 4.64 9.10 -74.06 -0.67 3.96 16 29 H 0.16 5.42 8.06 -2.91 -0.02 5.40 16 30 H 0.17 4.50 8.06 -2.91 -0.02 4.47 16 31 H 0.42 4.90 8.93 -92.71 -0.83 4.07 16 32 H 0.41 5.43 7.93 -92.70 -0.73 4.70 16 Total: -1.00 -74.24 290.32 1.35 -72.89 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -1.25 Total: 31.01 kcal Atomic # 6 Polarization: 31.90 SS G_CDS: 4.46 Total: 36.36 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -3.43 Total: -97.09 kcal Atomic # 8 Polarization: -84.18 SS G_CDS: -0.46 Total: -84.64 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -74.24 1.35 -72.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069910.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.226 kcal (2) G-P(sol) polarization free energy of solvation -74.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds