Wall clock time and date at job start Fri Apr 10 2020 14:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99938 * 2 1 4 4 H 1.48503 * 109.47166 * 270.00053 * 3 2 1 5 5 H 1.48498 * 109.47239 * 30.00357 * 3 2 1 6 6 H 1.48504 * 109.46715 * 150.00221 * 3 2 1 7 7 C 1.37880 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99852 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99985 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47253 * 179.97438 * 9 7 2 11 11 C 1.34771 * 119.99910 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00269 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99917 * 179.97438 * 11 10 9 14 14 N 1.46504 * 109.47376 * 179.97438 * 13 11 10 15 15 C 1.34785 * 119.88448 * 90.00125 * 14 13 11 16 16 N 1.30430 * 121.82735 * 179.97438 * 15 14 13 17 17 C 1.34339 * 121.47923 * 0.02562 * 16 15 14 18 18 C 1.48494 * 120.20942 * 179.97438 * 17 16 15 19 19 O 1.21377 * 119.99771 * 180.02562 * 18 17 16 20 20 O 1.34631 * 120.00144 * 0.02562 * 18 17 16 21 21 C 1.37946 * 119.57807 * 0.27487 * 17 16 15 22 22 C 1.34978 * 119.89184 * 269.98398 * 14 13 11 23 23 O 1.21906 * 120.71583 * 0.02562 * 22 14 13 24 24 H 0.97001 * 119.99544 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47322 * 59.99168 * 9 7 2 26 26 H 1.09005 * 109.47159 * 299.99715 * 9 7 2 27 27 H 0.96997 * 119.99508 * 359.97438 * 10 9 7 28 28 H 1.09009 * 109.47050 * 60.00348 * 13 11 10 29 29 H 1.09001 * 109.47475 * 300.00175 * 13 11 10 30 30 H 1.08002 * 119.08617 * 359.97438 * 15 14 13 31 31 H 0.96700 * 117.00206 * 180.02562 * 20 18 17 32 32 H 1.08004 * 120.83976 * 179.72718 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 5.3249 -2.8216 -0.0020 12 8 6.1130 -1.8998 -0.0025 13 6 5.8272 -4.2425 -0.0013 14 7 7.2922 -4.2425 -0.0032 15 6 7.9653 -4.2415 1.1645 16 7 9.2689 -4.2420 1.2071 17 6 10.0074 -4.2431 0.0848 18 6 11.4901 -4.2431 0.1661 19 8 12.1536 -4.2437 -0.8503 20 8 12.0985 -4.2425 1.3671 21 6 9.3795 -4.2380 -1.1434 22 6 7.9634 -4.2440 -1.1743 23 8 7.3637 -4.2448 -2.2356 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6802 -0.8912 27 1 3.3694 -3.3126 -0.0002 28 1 5.4631 -4.7570 -0.8906 29 1 5.4646 -4.7556 0.8894 30 1 7.4098 -4.2401 2.0907 31 1 13.0655 -4.2421 1.3695 32 1 9.9533 -4.2343 -2.0585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:53 Heat of formation + Delta-G solvation = -137.858279 kcal Electronic energy + Delta-G solvation = -21007.331619 eV Core-core repulsion = 17353.905804 eV Total energy + Delta-G solvation = -3653.425815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.15111 -41.30222 -40.43913 -38.91472 -37.30794 -36.57024 -36.07953 -34.46064 -32.36105 -31.10958 -29.25846 -26.83007 -25.70381 -24.16353 -22.94138 -21.77510 -20.31314 -19.53376 -18.93267 -18.69953 -18.42698 -18.18687 -17.11257 -16.89542 -16.71587 -16.52089 -16.46092 -15.81640 -15.66438 -15.07935 -14.77182 -14.47955 -14.35315 -14.27325 -14.17388 -13.27182 -13.10211 -12.73686 -12.72893 -12.33344 -12.21669 -11.95444 -11.66057 -11.59636 -11.37093 -10.95651 -10.93218 -10.02899 -9.85203 -8.40717 -6.47328 -1.09089 0.41421 1.02769 1.24097 1.31359 1.35078 1.44933 1.53111 1.62971 2.21422 2.26703 2.53778 2.83160 2.95214 3.33669 3.53206 3.72337 3.87337 3.95062 4.21056 4.26928 4.39988 4.75486 5.00281 5.04217 5.18053 5.24714 5.35266 5.42027 6.05313 6.37338 6.46035 6.54123 6.72041 6.83930 7.12567 7.29608 8.73754 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032843 B = 0.003415 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.339852 B = 8197.222003 C = 8424.442250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.232 3.768 10 N -0.693 5.693 11 C 0.487 3.513 12 O -0.593 6.593 13 C 0.076 3.924 14 N -0.500 5.500 15 C 0.403 3.597 16 N -0.524 5.524 17 C 0.151 3.849 18 C 0.551 3.449 19 O -0.520 6.520 20 O -0.480 6.480 21 C -0.221 4.221 22 C 0.517 3.483 23 O -0.559 6.559 24 H 0.272 0.728 25 H 0.021 0.979 26 H 0.003 0.997 27 H 0.416 0.584 28 H 0.141 0.859 29 H 0.199 0.801 30 H 0.265 0.735 31 H 0.438 0.562 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.843 -13.334 6.922 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.108 3.892 10 N -0.343 5.343 11 C 0.273 3.727 12 O -0.475 6.475 13 C -0.048 4.048 14 N -0.215 5.215 15 C 0.121 3.879 16 N -0.247 5.247 17 C 0.030 3.970 18 C 0.393 3.607 19 O -0.409 6.409 20 O -0.293 6.293 21 C -0.247 4.247 22 C 0.316 3.684 23 O -0.438 6.438 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.021 0.979 27 H 0.253 0.747 28 H 0.159 0.841 29 H 0.216 0.784 30 H 0.281 0.719 31 H 0.301 0.699 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 19.139 -12.570 6.608 23.832 hybrid contribution -0.076 0.879 -1.205 1.493 sum 19.063 -11.691 5.403 23.006 Atomic orbital electron populations 1.69973 1.07620 1.28559 1.50707 1.25550 0.95465 1.02487 0.93764 0.85932 0.79429 0.79828 0.79121 1.19766 1.19815 1.18226 1.21285 0.89839 0.94697 1.52397 0.91616 1.19110 0.93438 0.80924 0.95727 1.45872 1.06334 1.10060 1.72046 1.21361 0.82739 0.92306 0.76317 1.90716 1.56368 1.47911 1.52473 1.22234 0.76790 0.93982 1.11816 1.46439 1.10144 1.56604 1.08280 1.26079 0.88475 0.82587 0.90776 1.68489 1.04654 1.23646 1.27892 1.20318 0.91878 0.95140 0.89642 1.20206 0.87154 0.71840 0.81478 1.90928 1.65892 1.46438 1.37684 1.84614 1.30343 1.83776 1.30550 1.23367 0.92897 1.08027 1.00438 1.17361 0.88932 0.78442 0.83700 1.90960 1.70784 1.52264 1.29818 0.91873 0.96158 0.97862 0.74729 0.84096 0.78389 0.71932 0.69885 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.00 13.96 21.45 0.30 -53.70 16 2 C 0.03 1.53 5.47 84.65 0.46 1.99 16 3 Si 0.93 42.96 27.47 68.60 1.88 44.84 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.26 -11.64 6.54 99.48 0.65 -10.99 16 7 C -0.54 -28.34 9.83 25.60 0.25 -28.09 16 8 H 0.07 3.55 7.84 -2.91 -0.02 3.52 16 9 C 0.23 10.56 4.50 85.63 0.38 10.95 16 10 N -0.69 -23.50 5.55 -466.80 -2.59 -26.09 16 11 C 0.49 14.93 7.90 87.66 0.69 15.62 16 12 O -0.59 -24.12 16.43 -3.02 -0.05 -24.17 16 13 C 0.08 1.30 5.84 85.63 0.50 1.80 16 14 N -0.50 -10.21 2.06 -658.73 -1.36 -11.56 16 15 C 0.40 5.92 11.45 180.36 2.07 7.99 16 16 N -0.52 -9.97 10.20 -188.19 -1.92 -11.89 16 17 C 0.15 3.36 6.77 41.43 0.28 3.64 16 18 C 0.55 11.15 8.34 70.56 0.59 11.74 16 19 O -0.52 -12.90 17.16 20.23 0.35 -12.55 16 20 O -0.48 -6.49 13.27 -55.39 -0.74 -7.22 16 21 C -0.22 -5.64 9.67 23.04 0.22 -5.42 16 22 C 0.52 14.64 7.47 85.05 0.63 15.27 16 23 O -0.56 -20.12 16.76 -5.01 -0.08 -20.20 16 24 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 26 H 0.00 0.17 7.57 -2.38 -0.02 0.15 16 27 H 0.42 11.40 8.32 -92.71 -0.77 10.63 16 28 H 0.14 2.37 7.44 -2.38 -0.02 2.35 16 29 H 0.20 0.70 8.01 -2.39 -0.02 0.68 16 30 H 0.27 0.85 8.01 -2.91 -0.02 0.83 16 31 H 0.44 1.29 9.11 -74.06 -0.67 0.61 16 32 H 0.17 4.24 7.68 -2.91 -0.02 4.22 16 Total: -1.00 -84.79 300.34 1.59 -83.20 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -0.29 Total: 3.86 kcal Atomic # 6 Polarization: 29.41 SS G_CDS: 6.08 Total: 35.49 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -5.57 Total: -103.25 kcal Atomic # 8 Polarization: -63.62 SS G_CDS: -0.52 Total: -64.14 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.84 kcal Total: -84.79 1.59 -83.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.657 kcal (2) G-P(sol) polarization free energy of solvation -84.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds