Wall clock time and date at job start Fri Apr 10 2020 14:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34114 * 125.69776 * 2 1 4 4 C 1.38641 * 107.33684 * 179.71490 * 3 2 1 5 5 C 1.46925 * 126.48964 * 180.24500 * 4 3 2 6 6 O 1.21418 * 120.00209 * 359.97438 * 5 4 3 7 7 C 1.49280 * 119.99843 * 180.02562 * 5 4 3 8 8 O 1.21274 * 119.99770 * 359.97438 * 7 5 4 9 9 O 1.34549 * 120.00110 * 179.97438 * 7 5 4 10 10 C 1.45198 * 117.00129 * 179.97438 * 9 7 5 11 11 C 1.50696 * 109.47364 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99886 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00355 * 179.97438 * 11 10 9 14 14 C 1.37090 * 120.00006 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00568 * 359.97438 * 14 13 11 16 16 C 1.38955 * 119.99838 * 179.97438 * 14 13 11 17 17 N 1.31410 * 119.99928 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99931 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47202 * 59.99794 * 18 16 14 20 20 H 1.48495 * 109.46844 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47001 * 299.99903 * 18 16 14 22 22 C 1.41570 * 107.01693 * 0.26593 * 4 3 2 23 23 N 1.30354 * 107.98861 * 359.97438 * 22 4 3 24 24 H 1.08998 * 109.46925 * 89.99684 * 1 2 3 25 25 H 1.09000 * 109.47141 * 209.99889 * 1 2 3 26 26 H 1.09002 * 109.47080 * 329.99945 * 1 2 3 27 27 H 1.08002 * 126.33398 * 359.97438 * 3 2 1 28 28 H 1.09008 * 109.46997 * 299.99796 * 10 9 7 29 29 H 1.08998 * 109.47244 * 59.99626 * 10 9 7 30 30 H 0.96996 * 119.99758 * 359.97438 * 13 11 10 31 31 H 0.96996 * 119.99640 * 180.02562 * 17 16 14 32 32 H 1.07993 * 126.00180 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2476 1.0891 0.0000 4 6 3.5634 0.6524 0.0066 5 6 4.7647 1.4983 0.0140 6 8 4.6558 2.7076 0.0144 7 6 6.1193 0.8709 0.0200 8 8 6.2281 -0.3369 0.0192 9 8 7.2194 1.6455 0.0263 10 6 8.5032 0.9672 0.0325 11 6 9.6111 1.9886 0.0397 12 8 9.3450 3.1720 0.0391 13 7 10.8978 1.5873 0.0467 14 6 11.9056 2.5166 0.0537 15 1 11.6687 3.5703 0.0532 16 6 13.2321 2.1029 0.0615 17 7 13.5205 0.8208 0.0626 18 14 14.6054 3.3692 0.0704 19 1 14.4875 4.2189 1.2826 20 1 15.9183 2.6754 0.0773 21 1 14.5021 4.2199 -1.1424 22 6 3.5302 -0.7629 0.0043 23 7 2.2813 -1.1363 -0.0026 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.9144 2.1165 -0.0004 28 1 8.5798 0.3424 0.9225 29 1 8.5890 0.3437 -0.8575 30 1 11.1107 0.6410 0.0475 31 1 14.4464 0.5320 0.0684 32 1 4.3888 -1.4180 0.0076 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322591102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:16 Heat of formation + Delta-G solvation = -62.471203 kcal Electronic energy + Delta-G solvation = -20484.790584 eV Core-core repulsion = 16834.633798 eV Total energy + Delta-G solvation = -3650.156786 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.76008 -40.47997 -38.76402 -38.04876 -36.30122 -33.98900 -33.81936 -31.36837 -30.82489 -28.84718 -27.93713 -25.67479 -24.40916 -22.29231 -21.39616 -20.00973 -19.58803 -18.09315 -17.96438 -17.46860 -16.62948 -16.49680 -15.98503 -15.66102 -15.29629 -14.68596 -14.63443 -14.55680 -14.01239 -13.65396 -13.50489 -13.17155 -13.08370 -13.04102 -12.30258 -12.19694 -11.67406 -11.60098 -11.12172 -11.09756 -10.49289 -10.46917 -10.28074 -9.98861 -9.90996 -9.57641 -9.13146 -8.50655 -8.06352 -6.48042 -3.89892 0.47756 1.46807 1.88028 2.17629 2.31208 3.15200 3.17838 3.24643 3.29261 3.75284 3.95632 4.12037 4.30396 4.34887 4.60990 4.68807 4.73420 4.89375 4.97524 5.10315 5.16186 5.31206 5.46117 5.66749 6.01823 6.13454 6.32805 6.42602 6.85202 7.18625 7.49903 7.65541 7.95843 8.50516 9.09148 9.40869 9.91193 10.69142 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.061130 B = 0.002762 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.930346 B =10136.547412 C =10574.022033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.361 5.361 3 C 0.141 3.859 4 C -0.316 4.316 5 C 0.450 3.550 6 O -0.406 6.406 7 C 0.435 3.565 8 O -0.483 6.483 9 O -0.300 6.300 10 C 0.056 3.944 11 C 0.437 3.563 12 O -0.572 6.572 13 N -0.552 5.552 14 C -0.302 4.302 15 H 0.106 0.894 16 C 0.025 3.975 17 N -0.898 5.898 18 Si 0.935 3.065 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.115 3.885 23 N -0.304 5.304 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.194 0.806 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.395 0.605 31 H 0.274 0.726 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.385 -4.815 -0.050 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.138 5.138 3 C -0.012 4.012 4 C -0.328 4.328 5 C 0.322 3.678 6 O -0.276 6.276 7 C 0.275 3.725 8 O -0.372 6.372 9 O -0.213 6.213 10 C -0.022 4.022 11 C 0.222 3.778 12 O -0.455 6.455 13 N -0.190 5.190 14 C -0.431 4.431 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.761 3.239 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.073 4.073 23 N -0.123 5.123 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.211 0.789 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.229 0.771 31 H 0.084 0.916 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -24.332 -4.817 -0.055 24.805 hybrid contribution 1.528 0.378 -0.006 1.574 sum -22.804 -4.439 -0.060 23.232 Atomic orbital electron populations 1.22059 0.73145 1.05244 1.04178 1.48537 1.07574 1.04052 1.53652 1.23223 0.89932 0.94063 0.93970 1.20242 0.92367 0.94453 1.25772 1.20385 0.85502 0.87888 0.74007 1.90663 1.87939 1.15731 1.33316 1.24136 0.87872 0.86225 0.74245 1.90689 1.87661 1.15377 1.43476 1.86715 1.14043 1.39317 1.81262 1.22921 0.79984 0.95374 1.03893 1.19278 0.83356 0.89023 0.86151 1.90591 1.82808 1.17210 1.54934 1.41681 1.03317 1.10047 1.63939 1.19683 0.84337 0.90884 1.48219 0.87642 1.25310 0.98572 0.96975 0.96897 1.69604 1.20582 1.13978 1.49671 0.85852 0.79024 0.79761 0.79216 1.19744 1.20893 1.19750 1.24774 0.95234 0.94009 0.93329 1.77278 1.02192 1.07255 1.25588 0.89926 0.88590 0.88812 0.78918 0.89029 0.89023 0.77138 0.91589 0.77305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 11.44 59.85 0.68 0.99 16 2 N -0.36 -2.95 3.97 -67.46 -0.27 -3.22 16 3 C 0.14 1.21 11.32 -16.41 -0.19 1.02 16 4 C -0.32 -3.65 6.12 -104.96 -0.64 -4.29 16 5 C 0.45 6.39 7.20 -31.47 -0.23 6.17 16 6 O -0.41 -6.59 17.52 -7.86 -0.14 -6.73 16 7 C 0.44 6.99 8.01 35.33 0.28 7.27 16 8 O -0.48 -7.49 14.03 -19.09 -0.27 -7.76 16 9 O -0.30 -5.85 9.62 -49.13 -0.47 -6.33 16 10 C 0.06 1.05 5.95 36.00 0.21 1.27 16 11 C 0.44 10.67 7.86 -10.98 -0.09 10.59 16 12 O -0.57 -16.32 16.08 -14.11 -0.23 -16.55 16 13 N -0.55 -14.01 5.29 -10.96 -0.06 -14.07 16 14 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 15 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 16 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 17 N -0.90 -24.10 13.05 55.50 0.72 -23.37 16 18 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.11 1.31 11.13 -16.91 -0.19 1.12 16 23 N -0.30 -3.37 12.48 30.90 0.39 -2.98 16 24 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 27 H 0.19 1.02 8.06 -52.49 -0.42 0.59 16 28 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.21 2.31 6.26 -52.49 -0.33 1.98 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -35.19 305.48 -3.83 -39.01 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -2.70 Total: 5.40 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: -0.39 Total: 16.16 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.78 Total: -43.64 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -1.10 Total: -37.36 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.19 -3.83 -39.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322591102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.457 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds