Wall clock time and date at job start Fri Apr 10 2020 14:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34114 * 125.69776 * 2 1 4 4 C 1.38641 * 107.33684 * 179.71490 * 3 2 1 5 5 C 1.46925 * 126.48964 * 180.24500 * 4 3 2 6 6 O 1.21418 * 120.00209 * 359.97438 * 5 4 3 7 7 C 1.49280 * 119.99843 * 180.02562 * 5 4 3 8 8 O 1.21274 * 119.99770 * 359.97438 * 7 5 4 9 9 O 1.34549 * 120.00110 * 179.97438 * 7 5 4 10 10 C 1.45198 * 117.00129 * 179.97438 * 9 7 5 11 11 C 1.50696 * 109.47364 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99886 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00355 * 179.97438 * 11 10 9 14 14 C 1.37090 * 120.00006 * 180.02562 * 13 11 10 15 15 H 1.07998 * 120.00568 * 359.97438 * 14 13 11 16 16 C 1.38955 * 119.99838 * 179.97438 * 14 13 11 17 17 N 1.31410 * 119.99928 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99931 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47202 * 59.99794 * 18 16 14 20 20 H 1.48495 * 109.46844 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47001 * 299.99903 * 18 16 14 22 22 C 1.41570 * 107.01693 * 0.26593 * 4 3 2 23 23 N 1.30354 * 107.98861 * 359.97438 * 22 4 3 24 24 H 1.08998 * 109.46925 * 89.99684 * 1 2 3 25 25 H 1.09000 * 109.47141 * 209.99889 * 1 2 3 26 26 H 1.09002 * 109.47080 * 329.99945 * 1 2 3 27 27 H 1.08002 * 126.33398 * 359.97438 * 3 2 1 28 28 H 1.09008 * 109.46997 * 299.99796 * 10 9 7 29 29 H 1.08998 * 109.47244 * 59.99626 * 10 9 7 30 30 H 0.96996 * 119.99758 * 359.97438 * 13 11 10 31 31 H 0.96996 * 119.99640 * 180.02562 * 17 16 14 32 32 H 1.07993 * 126.00180 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2476 1.0891 0.0000 4 6 3.5634 0.6524 0.0066 5 6 4.7647 1.4983 0.0140 6 8 4.6558 2.7076 0.0144 7 6 6.1193 0.8709 0.0200 8 8 6.2281 -0.3369 0.0192 9 8 7.2194 1.6455 0.0263 10 6 8.5032 0.9672 0.0325 11 6 9.6111 1.9886 0.0397 12 8 9.3450 3.1720 0.0391 13 7 10.8978 1.5873 0.0467 14 6 11.9056 2.5166 0.0537 15 1 11.6687 3.5703 0.0532 16 6 13.2321 2.1029 0.0615 17 7 13.5205 0.8208 0.0626 18 14 14.6054 3.3692 0.0704 19 1 14.4875 4.2189 1.2826 20 1 15.9183 2.6754 0.0773 21 1 14.5021 4.2199 -1.1424 22 6 3.5302 -0.7629 0.0043 23 7 2.2813 -1.1363 -0.0026 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.9144 2.1165 -0.0004 28 1 8.5798 0.3424 0.9225 29 1 8.5890 0.3437 -0.8575 30 1 11.1107 0.6410 0.0475 31 1 14.4464 0.5320 0.0684 32 1 4.3888 -1.4180 0.0076 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322591102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:16 Heat of formation + Delta-G solvation = -87.478516 kcal Electronic energy + Delta-G solvation = -20485.874982 eV Core-core repulsion = 16834.633798 eV Total energy + Delta-G solvation = -3651.241184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.59697 -41.72637 -40.21504 -39.66412 -37.72733 -36.04347 -34.44409 -33.42270 -31.65314 -30.38300 -28.70190 -27.01123 -26.01146 -23.31894 -22.14751 -21.47045 -21.02888 -20.08996 -19.09286 -18.64608 -17.97497 -17.70087 -17.37995 -16.68581 -16.58414 -16.20588 -15.98969 -15.78451 -15.38112 -15.07065 -14.92247 -14.13225 -13.88558 -13.81991 -13.55373 -13.53091 -13.48356 -12.93548 -12.85293 -12.48508 -12.12151 -12.00311 -11.94597 -11.57627 -11.07562 -10.69133 -10.52065 -10.11817 -9.92066 -8.52034 -6.02590 -0.57746 0.66210 0.92558 1.16995 1.38083 1.42560 1.45239 1.55184 1.86967 2.11082 2.27657 2.76721 3.13377 3.30842 3.51284 3.68010 3.86109 3.97088 4.12992 4.15056 4.22327 4.44146 4.47746 4.55163 4.73518 5.00976 5.34035 5.37289 5.69434 5.79927 5.89827 6.34896 6.44568 6.50999 7.03163 7.39585 7.94105 8.64651 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.061130 B = 0.002762 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.930346 B =10136.547412 C =10574.022033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.352 5.352 3 C 0.165 3.835 4 C -0.342 4.342 5 C 0.460 3.540 6 O -0.436 6.436 7 C 0.434 3.566 8 O -0.477 6.477 9 O -0.329 6.329 10 C 0.066 3.934 11 C 0.433 3.567 12 O -0.620 6.620 13 N -0.555 5.555 14 C -0.340 4.340 15 H 0.083 0.917 16 C -0.008 4.008 17 N -0.914 5.914 18 Si 0.998 3.002 19 H -0.270 1.270 20 H -0.268 1.268 21 H -0.270 1.270 22 C 0.110 3.890 23 N -0.326 5.326 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.126 0.874 27 H 0.230 0.770 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.401 0.599 31 H 0.281 0.719 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.831 -5.264 -0.043 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.128 5.128 3 C 0.010 3.990 4 C -0.355 4.355 5 C 0.335 3.665 6 O -0.309 6.309 7 C 0.274 3.726 8 O -0.365 6.365 9 O -0.244 6.244 10 C -0.011 4.011 11 C 0.220 3.780 12 O -0.507 6.507 13 N -0.193 5.193 14 C -0.469 4.469 15 H 0.101 0.899 16 C -0.209 4.209 17 N -0.553 5.553 18 Si 0.821 3.179 19 H -0.195 1.195 20 H -0.193 1.193 21 H -0.196 1.196 22 C -0.078 4.078 23 N -0.145 5.145 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.144 0.856 27 H 0.246 0.754 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.236 0.764 31 H 0.091 0.909 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -25.808 -5.350 -0.048 26.357 hybrid contribution 1.808 0.430 -0.011 1.858 sum -24.001 -4.919 -0.059 24.500 Atomic orbital electron populations 1.22544 0.70118 1.07133 1.05851 1.48963 1.09134 1.03127 1.51595 1.23728 0.88727 0.95484 0.91101 1.20140 0.92485 0.94191 1.28679 1.20441 0.85131 0.87729 0.73206 1.90652 1.87861 1.16676 1.35711 1.24658 0.87752 0.86316 0.73891 1.90683 1.87596 1.15135 1.43076 1.86705 1.14748 1.40792 1.82128 1.22739 0.78558 0.93430 1.06343 1.20141 0.84121 0.89466 0.84271 1.90552 1.83675 1.19704 1.56751 1.41708 1.03613 1.10030 1.63961 1.19675 0.85824 0.90535 1.50825 0.89933 1.26117 1.00113 0.99027 0.95611 1.69658 1.21550 1.15146 1.48994 0.84922 0.76439 0.77474 0.79110 1.19543 1.19252 1.19557 1.24733 0.95536 0.94028 0.93529 1.77228 1.02263 1.08915 1.26126 0.88305 0.88179 0.85557 0.75417 0.86448 0.86442 0.76375 0.90906 0.77761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.24 11.44 127.77 1.46 1.70 16 2 N -0.35 -4.78 3.97 -367.35 -1.46 -6.24 16 3 C 0.17 2.37 11.32 84.44 0.96 3.33 16 4 C -0.34 -7.52 6.12 -20.08 -0.12 -7.64 16 5 C 0.46 12.97 7.20 27.52 0.20 13.17 16 6 O -0.44 -14.17 17.52 9.26 0.16 -14.01 16 7 C 0.43 13.88 8.01 70.80 0.57 14.45 16 8 O -0.48 -14.49 14.03 20.56 0.29 -14.20 16 9 O -0.33 -12.95 9.62 -45.93 -0.44 -13.39 16 10 C 0.07 2.48 5.95 71.23 0.42 2.90 16 11 C 0.43 21.61 7.86 87.65 0.69 22.30 16 12 O -0.62 -36.67 16.08 15.73 0.25 -36.42 16 13 N -0.56 -28.71 5.29 -306.98 -1.62 -30.33 16 14 C -0.34 -19.27 9.68 84.04 0.81 -18.46 16 15 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 16 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 17 N -0.91 -48.52 13.05 21.66 0.28 -48.24 16 18 Si 1.00 42.38 29.55 68.60 2.03 44.41 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 20 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 22 C 0.11 2.42 11.13 85.73 0.95 3.37 16 23 N -0.33 -6.72 12.48 -56.14 -0.70 -7.42 16 24 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.13 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.23 1.53 8.06 -2.91 -0.02 1.51 16 28 H 0.12 3.78 8.14 -2.38 -0.02 3.76 16 29 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 30 H 0.40 19.29 7.90 -92.71 -0.73 18.55 16 31 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 32 H 0.21 4.48 6.26 -2.91 -0.02 4.46 16 Total: -1.00 -77.52 305.48 5.65 -71.86 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.46 Total: 18.81 kcal Atomic # 6 Polarization: 28.77 SS G_CDS: 6.41 Total: 35.18 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -3.50 Total: -92.24 kcal Atomic # 8 Polarization: -78.29 SS G_CDS: 0.26 Total: -78.02 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -77.52 5.65 -71.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322591102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.615 kcal (2) G-P(sol) polarization free energy of solvation -77.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds