Wall clock time and date at job start Fri Apr 10 2020 14:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00238 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40111 * 293.54357 * 9 7 2 11 11 O 1.42104 * 106.39786 * 66.46267 * 9 7 2 12 12 N 1.65594 * 107.21831 * 180.02562 * 9 7 2 13 13 C 1.44585 * 118.64411 * 90.00183 * 12 9 7 14 14 C 1.54862 * 109.59648 * 89.24780 * 13 12 9 15 15 C 1.47093 * 110.32396 * 71.27289 * 14 13 12 16 16 C 1.52571 * 114.32374 * 297.19532 * 15 14 13 17 17 O 1.42909 * 109.48960 * 325.02251 * 16 15 14 18 18 C 1.52997 * 109.49114 * 204.97630 * 16 15 14 19 19 F 1.39905 * 109.46944 * 65.00029 * 18 16 15 20 20 C 1.50876 * 109.35834 * 85.00791 * 16 15 14 21 21 C 1.47603 * 118.64497 * 269.73121 * 12 9 7 22 22 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.45285 * 209.28988 * 13 12 9 24 24 H 1.09000 * 109.44596 * 329.23854 * 13 12 9 25 25 H 1.09003 * 109.32671 * 191.52943 * 14 13 12 26 26 H 1.08996 * 109.33466 * 311.00804 * 14 13 12 27 27 H 1.08994 * 108.51447 * 58.44520 * 15 14 13 28 28 H 1.08994 * 108.51597 * 176.10175 * 15 14 13 29 29 H 0.96696 * 113.99693 * 300.00029 * 17 16 15 30 30 H 1.08993 * 109.47259 * 184.99729 * 18 16 15 31 31 H 1.08995 * 109.47028 * 305.00040 * 18 16 15 32 32 H 1.09001 * 109.36769 * 28.31304 * 20 16 15 33 33 H 1.09010 * 109.36546 * 148.04965 * 20 16 15 34 34 H 1.08994 * 108.94779 * 342.84611 * 21 12 9 35 35 H 1.09001 * 108.94291 * 101.47135 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7201 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4511 -2.7950 -1.2501 12 7 2.2484 -3.9354 -0.0005 13 6 2.7192 -4.4441 1.2684 14 6 1.8062 -5.6053 1.7333 15 6 2.0251 -6.7943 0.8953 16 6 1.6698 -6.6004 -0.5757 17 8 0.5404 -5.7313 -0.6828 18 6 1.3328 -7.9549 -1.2023 19 9 0.1760 -8.4692 -0.6069 20 6 2.8454 -5.9900 -1.2980 21 6 2.7246 -4.4588 -1.2959 22 1 -0.4849 -0.8401 0.0004 23 1 3.7407 -4.8076 1.1573 24 1 2.6966 -3.6458 2.0102 25 1 2.0328 -5.8490 2.7713 26 1 0.7635 -5.2973 1.6571 27 1 3.0756 -7.0769 0.9632 28 1 1.4218 -7.6117 1.2899 29 1 -0.2529 -6.0608 -0.2388 30 1 1.1657 -7.8288 -2.2719 31 1 2.1612 -8.6451 -1.0428 32 1 3.7686 -6.2831 -0.7980 33 1 2.8626 -6.3480 -2.3275 34 1 2.0268 -4.1579 -2.0773 35 1 3.7028 -4.0297 -1.5129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192950737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:21 Heat of formation + Delta-G solvation = -192.097542 kcal Electronic energy + Delta-G solvation = -22301.975883 eV Core-core repulsion = 18761.722067 eV Total energy + Delta-G solvation = -3540.253816 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.093 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -47.78857 -39.36859 -35.51707 -35.24482 -34.16539 -33.10156 -32.65467 -32.28511 -27.81822 -25.63221 -25.33744 -23.47418 -20.80843 -20.07136 -19.18874 -17.46729 -16.94627 -16.33432 -16.23172 -16.01357 -15.35186 -15.23737 -14.72891 -14.05096 -13.85499 -13.68134 -13.41166 -13.14344 -12.87691 -12.49782 -12.48270 -11.99258 -11.64936 -11.49360 -11.03671 -11.00463 -10.92427 -10.86226 -10.70628 -10.35276 -10.30729 -10.28383 -10.11510 -10.00316 -9.72066 -9.11711 -8.58188 -7.95401 -7.10077 -5.30248 2.29461 3.25594 3.28209 3.46643 4.13516 4.21154 4.31525 4.46588 4.68076 4.73557 4.78341 4.89149 5.01692 5.21048 5.29961 5.47619 5.55523 5.59701 5.71443 5.74324 5.91773 5.99776 6.04737 6.09124 6.15793 6.28895 6.40368 6.44379 6.70052 6.82282 7.69130 7.70963 7.84822 8.12826 8.71248 10.27257 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.036166 B = 0.006088 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.018434 B = 4598.039369 C = 4651.713121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.089 3.911 3 Si 1.081 2.919 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.279 1.279 7 C -1.095 5.095 8 H 0.099 0.901 9 S 2.703 3.297 10 O -1.015 7.015 11 O -1.005 7.005 12 N -0.986 5.986 13 C 0.136 3.864 14 C -0.138 4.138 15 C -0.140 4.140 16 C 0.112 3.888 17 O -0.531 6.531 18 C 0.036 3.964 19 F -0.217 7.217 20 C -0.117 4.117 21 C 0.137 3.863 22 H 0.277 0.723 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.373 0.627 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.843 -13.924 -0.649 15.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.129 4.129 3 Si 0.904 3.096 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.204 1.204 7 C -1.228 5.228 8 H 0.117 0.883 9 S 2.804 3.196 10 O -1.005 7.005 11 O -0.995 6.995 12 N -0.820 5.820 13 C 0.009 3.991 14 C -0.178 4.178 15 C -0.177 4.177 16 C 0.070 3.930 17 O -0.336 6.336 18 C -0.019 4.019 19 F -0.198 7.198 20 C -0.156 4.156 21 C 0.012 3.988 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.221 0.779 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.117 -12.168 -0.984 14.130 hybrid contribution 0.457 -1.939 0.405 2.033 sum 7.574 -14.107 -0.579 16.022 Atomic orbital electron populations 1.70814 1.07185 1.32017 1.37706 1.25940 0.95164 1.03880 0.87925 0.83454 0.75066 0.73284 0.77806 1.20068 1.19775 1.20398 1.31740 1.08003 1.13417 1.69655 0.88292 1.00787 0.72675 0.73354 0.72760 1.93379 1.73319 1.88010 1.45772 1.93376 1.73078 1.87664 1.45370 1.57046 1.62863 1.53427 1.08676 1.20949 0.96532 0.96335 0.85294 1.21201 1.02851 0.95422 0.98280 1.21113 1.02082 0.99495 0.95043 1.21174 0.88709 0.88165 0.94940 1.86800 1.21121 1.46892 1.78776 1.22902 0.84832 0.95900 0.98277 1.92739 1.52508 1.88446 1.86083 1.21716 0.95867 0.97511 1.00503 1.21080 0.99715 0.91785 0.86262 0.91138 0.91886 0.90436 0.91352 0.90420 0.91552 0.92085 0.77914 0.89914 0.90290 0.90493 0.90476 0.88604 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -26.60 13.66 55.43 0.76 -25.84 16 2 C 0.09 2.60 5.46 -17.82 -0.10 2.50 16 3 Si 1.08 24.58 29.90 -169.99 -5.08 19.50 16 4 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -1.09 -31.15 9.75 30.60 0.30 -30.86 16 8 H 0.10 2.62 7.81 -52.48 -0.41 2.21 16 9 S 2.70 71.92 3.69 -107.50 -0.40 71.53 16 10 O -1.01 -29.06 15.87 -57.17 -0.91 -29.97 16 11 O -1.00 -29.14 15.80 -57.32 -0.91 -30.04 16 12 N -0.99 -19.78 1.93 -113.51 -0.22 -20.00 16 13 C 0.14 2.32 5.24 -4.08 -0.02 2.30 16 14 C -0.14 -2.11 5.44 -28.58 -0.16 -2.26 16 15 C -0.14 -1.73 4.50 -29.79 -0.13 -1.87 16 16 C 0.11 1.47 0.80 -91.91 -0.07 1.40 16 17 O -0.53 -9.11 8.97 -35.23 -0.32 -9.43 16 18 C 0.04 0.38 6.39 37.16 0.24 0.62 16 19 F -0.22 -2.78 16.21 2.25 0.04 -2.74 16 20 C -0.12 -1.45 5.18 -27.49 -0.14 -1.59 16 21 C 0.14 2.34 5.64 -3.13 -0.02 2.33 16 22 H 0.28 8.93 6.52 -40.82 -0.27 8.66 16 23 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 24 H 0.08 1.43 7.67 -51.93 -0.40 1.03 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.41 6.66 -51.93 -0.35 1.06 16 27 H 0.07 0.69 7.36 -51.93 -0.38 0.31 16 28 H 0.06 0.72 7.34 -51.93 -0.38 0.33 16 29 H 0.37 5.74 8.40 45.56 0.38 6.13 16 30 H 0.08 0.81 7.98 -51.93 -0.41 0.40 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.78 7.32 -51.93 -0.38 0.40 16 33 H 0.08 0.78 7.66 -51.92 -0.40 0.39 16 34 H 0.10 1.87 6.62 -51.93 -0.34 1.53 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 289.59 15.07 4.36 4.36 Total: -1.00 -36.08 289.59 -6.60 -42.68 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.82 Total: 7.39 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: -0.11 Total: -27.43 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.54 Total: -45.84 kcal Atomic # 8 Polarization: -67.31 SS G_CDS: -2.13 Total: -69.44 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.50 kcal Atomic # 16 Polarization: 71.92 SS G_CDS: -0.40 Total: 71.53 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -36.08 -6.60 -42.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.422 kcal (2) G-P(sol) polarization free energy of solvation -36.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds