Wall clock time and date at job start Fri Apr 10 2020 14:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00238 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40111 * 293.54357 * 9 7 2 11 11 O 1.42104 * 106.39786 * 66.46267 * 9 7 2 12 12 N 1.65594 * 107.21831 * 180.02562 * 9 7 2 13 13 C 1.44585 * 118.64411 * 90.00183 * 12 9 7 14 14 C 1.54862 * 109.59648 * 89.24780 * 13 12 9 15 15 C 1.47093 * 110.32396 * 71.27289 * 14 13 12 16 16 C 1.52571 * 114.32374 * 297.19532 * 15 14 13 17 17 O 1.42909 * 109.48960 * 325.02251 * 16 15 14 18 18 C 1.52997 * 109.49114 * 204.97630 * 16 15 14 19 19 F 1.39905 * 109.46944 * 65.00029 * 18 16 15 20 20 C 1.50876 * 109.35834 * 85.00791 * 16 15 14 21 21 C 1.47603 * 118.64497 * 269.73121 * 12 9 7 22 22 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.45285 * 209.28988 * 13 12 9 24 24 H 1.09000 * 109.44596 * 329.23854 * 13 12 9 25 25 H 1.09003 * 109.32671 * 191.52943 * 14 13 12 26 26 H 1.08996 * 109.33466 * 311.00804 * 14 13 12 27 27 H 1.08994 * 108.51447 * 58.44520 * 15 14 13 28 28 H 1.08994 * 108.51597 * 176.10175 * 15 14 13 29 29 H 0.96696 * 113.99693 * 300.00029 * 17 16 15 30 30 H 1.08993 * 109.47259 * 184.99729 * 18 16 15 31 31 H 1.08995 * 109.47028 * 305.00040 * 18 16 15 32 32 H 1.09001 * 109.36769 * 28.31304 * 20 16 15 33 33 H 1.09010 * 109.36546 * 148.04965 * 20 16 15 34 34 H 1.08994 * 108.94779 * 342.84611 * 21 12 9 35 35 H 1.09001 * 108.94291 * 101.47135 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7201 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4511 -2.7950 -1.2501 12 7 2.2484 -3.9354 -0.0005 13 6 2.7192 -4.4441 1.2684 14 6 1.8062 -5.6053 1.7333 15 6 2.0251 -6.7943 0.8953 16 6 1.6698 -6.6004 -0.5757 17 8 0.5404 -5.7313 -0.6828 18 6 1.3328 -7.9549 -1.2023 19 9 0.1760 -8.4692 -0.6069 20 6 2.8454 -5.9900 -1.2980 21 6 2.7246 -4.4588 -1.2959 22 1 -0.4849 -0.8401 0.0004 23 1 3.7407 -4.8076 1.1573 24 1 2.6966 -3.6458 2.0102 25 1 2.0328 -5.8490 2.7713 26 1 0.7635 -5.2973 1.6571 27 1 3.0756 -7.0769 0.9632 28 1 1.4218 -7.6117 1.2899 29 1 -0.2529 -6.0608 -0.2388 30 1 1.1657 -7.8288 -2.2719 31 1 2.1612 -8.6451 -1.0428 32 1 3.7686 -6.2831 -0.7980 33 1 2.8626 -6.3480 -2.3275 34 1 2.0268 -4.1579 -2.0773 35 1 3.7028 -4.0297 -1.5129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192950737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:21 Heat of formation + Delta-G solvation = -221.592309 kcal Electronic energy + Delta-G solvation = -22303.254872 eV Core-core repulsion = 18761.722067 eV Total energy + Delta-G solvation = -3541.532805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.093 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.68536 -40.50620 -37.60980 -36.68587 -36.36908 -35.28581 -33.91701 -33.43696 -28.89247 -27.67558 -26.75942 -24.56970 -22.17877 -21.39016 -21.07015 -19.12513 -18.35363 -17.90957 -17.47559 -17.09299 -16.73792 -16.53869 -16.25800 -15.77666 -15.65436 -15.14838 -14.81699 -14.39520 -14.37418 -13.95583 -13.68188 -13.37622 -13.07337 -12.92957 -12.91039 -12.73323 -12.57255 -12.43076 -12.16452 -11.97964 -11.88078 -11.83528 -11.54799 -11.24877 -11.20643 -10.79822 -10.59293 -9.63937 -9.33840 -7.62074 0.30303 1.42776 1.48804 1.72863 2.33762 2.59599 2.67822 3.14824 3.45778 3.66596 3.69917 3.80615 3.99848 4.05686 4.13481 4.20136 4.30873 4.38667 4.50994 4.66356 4.70254 4.76072 4.82811 4.90762 4.96246 5.06435 5.13874 5.26193 5.32837 5.45438 5.50963 5.78170 6.17913 6.51281 6.71861 7.93898 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.036166 B = 0.006088 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.018434 B = 4598.039369 C = 4651.713121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.031 3.969 3 Si 1.121 2.879 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.250 1.250 7 C -1.115 5.115 8 H 0.115 0.885 9 S 2.708 3.292 10 O -1.047 7.047 11 O -1.040 7.040 12 N -0.975 5.975 13 C 0.124 3.876 14 C -0.136 4.136 15 C -0.137 4.137 16 C 0.098 3.902 17 O -0.566 6.566 18 C 0.038 3.962 19 F -0.232 7.232 20 C -0.111 4.111 21 C 0.126 3.874 22 H 0.255 0.745 23 H 0.110 0.890 24 H 0.054 0.946 25 H 0.090 0.910 26 H 0.036 0.964 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.372 0.628 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.178 -15.471 -0.719 19.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.179 4.179 3 Si 0.934 3.066 4 H -0.177 1.177 5 H -0.190 1.190 6 H -0.173 1.173 7 C -1.247 5.247 8 H 0.133 0.867 9 S 2.810 3.190 10 O -1.037 7.037 11 O -1.030 7.030 12 N -0.814 5.814 13 C -0.002 4.002 14 C -0.175 4.175 15 C -0.174 4.174 16 C 0.057 3.943 17 O -0.372 6.372 18 C -0.016 4.016 19 F -0.213 7.213 20 C -0.149 4.149 21 C 0.001 3.999 22 H 0.065 0.935 23 H 0.128 0.872 24 H 0.072 0.928 25 H 0.108 0.892 26 H 0.055 0.945 27 H 0.121 0.879 28 H 0.086 0.914 29 H 0.220 0.780 30 H 0.107 0.893 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.456 -13.743 -1.052 17.300 hybrid contribution -0.529 -1.553 0.428 1.695 sum 9.926 -15.296 -0.625 18.245 Atomic orbital electron populations 1.70973 1.08542 1.30628 1.40899 1.27861 0.95130 1.08602 0.86261 0.83080 0.74981 0.68922 0.79581 1.17699 1.19012 1.17305 1.32234 1.09139 1.14783 1.68592 0.86660 1.00254 0.73330 0.73996 0.71424 1.93320 1.74858 1.88667 1.46874 1.93316 1.74669 1.88367 1.46638 1.56538 1.61774 1.51945 1.11095 1.21294 0.99325 0.96324 0.83212 1.21177 0.99954 0.96012 1.00370 1.21085 1.04437 0.97970 0.93922 1.21570 0.87719 0.89103 0.95952 1.86785 1.22349 1.48979 1.79069 1.23000 0.85353 0.95099 0.98173 1.92711 1.53734 1.88507 1.86382 1.21812 0.97055 0.93312 1.02761 1.21366 0.99400 0.95625 0.83528 0.93461 0.87157 0.92766 0.89196 0.94531 0.87912 0.91379 0.78021 0.89292 0.86404 0.86698 0.87883 0.92132 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -57.25 13.66 21.45 0.29 -56.96 16 2 C 0.03 1.83 5.46 84.65 0.46 2.29 16 3 Si 1.12 48.44 29.90 68.60 2.05 50.49 16 4 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 7 C -1.11 -64.42 9.75 67.73 0.66 -63.76 16 8 H 0.12 6.04 7.81 -2.91 -0.02 6.02 16 9 S 2.71 149.45 3.69 -56.49 -0.21 149.24 16 10 O -1.05 -63.14 15.87 -128.00 -2.03 -65.17 16 11 O -1.04 -63.45 15.80 -127.86 -2.02 -65.47 16 12 N -0.98 -38.67 1.93 -513.03 -0.99 -39.67 16 13 C 0.12 4.04 5.24 87.37 0.46 4.49 16 14 C -0.14 -3.95 5.44 29.39 0.16 -3.79 16 15 C -0.14 -2.92 4.50 28.62 0.13 -2.79 16 16 C 0.10 2.30 0.80 -11.63 -0.01 2.29 16 17 O -0.57 -19.75 8.97 -148.98 -1.34 -21.08 16 18 C 0.04 0.69 6.39 71.98 0.46 1.15 16 19 F -0.23 -5.54 16.21 44.97 0.73 -4.81 16 20 C -0.11 -2.30 5.18 30.10 0.16 -2.14 16 21 C 0.13 4.08 5.64 86.37 0.49 4.56 16 22 H 0.25 17.40 6.52 -92.71 -0.60 16.79 16 23 H 0.11 2.54 8.07 -2.39 -0.02 2.52 16 24 H 0.05 1.99 7.67 -2.39 -0.02 1.97 16 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.04 1.36 6.66 -2.39 -0.02 1.34 16 27 H 0.10 1.49 7.36 -2.39 -0.02 1.48 16 28 H 0.07 1.39 7.34 -2.39 -0.02 1.37 16 29 H 0.37 12.21 8.40 -74.06 -0.62 11.59 16 30 H 0.09 1.48 7.98 -2.39 -0.02 1.46 16 31 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 1.56 7.32 -2.39 -0.02 1.54 16 33 H 0.10 1.64 7.66 -2.38 -0.02 1.62 16 34 H 0.06 2.40 6.62 -2.39 -0.02 2.38 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -84.20 289.59 0.10 -84.10 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.65 Total: 27.03 kcal Atomic # 6 Polarization: -60.66 SS G_CDS: 2.96 Total: -57.70 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -0.70 Total: -96.62 kcal Atomic # 8 Polarization: -146.34 SS G_CDS: -5.39 Total: -151.73 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.73 Total: -4.81 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.05 Total: 50.49 kcal Atomic # 16 Polarization: 149.45 SS G_CDS: -0.21 Total: 149.24 kcal Total: -84.20 0.10 -84.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.494 kcal (2) G-P(sol) polarization free energy of solvation -84.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds