Wall clock time and date at job start Fri Apr 10 2020 14:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99891 * 2 1 4 4 H 1.48501 * 109.47237 * 270.00205 * 3 2 1 5 5 H 1.48494 * 109.47098 * 30.00367 * 3 2 1 6 6 H 1.48501 * 109.47079 * 150.00332 * 3 2 1 7 7 C 1.37877 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00268 * 359.97438 * 7 2 1 9 9 S 1.76206 * 119.99792 * 179.97438 * 7 2 1 10 10 O 1.42099 * 106.40186 * 71.65560 * 9 7 2 11 11 O 1.42101 * 106.39928 * 298.73435 * 9 7 2 12 12 N 1.65600 * 107.21517 * 185.19631 * 9 7 2 13 13 C 1.44583 * 118.64222 * 274.92191 * 12 9 7 14 14 C 1.54873 * 109.59717 * 270.72712 * 13 12 9 15 15 C 1.47092 * 110.32087 * 288.73194 * 14 13 12 16 16 C 1.52570 * 114.32354 * 62.80556 * 15 14 13 17 17 O 1.42902 * 109.49170 * 34.97437 * 16 15 14 18 18 C 1.53004 * 109.48821 * 155.01903 * 16 15 14 19 19 F 1.39901 * 109.47272 * 299.95541 * 18 16 15 20 20 C 1.50881 * 109.37947 * 274.99298 * 16 15 14 21 21 C 1.47606 * 118.64644 * 94.90197 * 12 9 7 22 22 H 0.97002 * 120.00434 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.44827 * 150.68978 * 13 12 9 24 24 H 1.08994 * 109.44919 * 30.76338 * 13 12 9 25 25 H 1.08996 * 109.32634 * 168.47146 * 14 13 12 26 26 H 1.09001 * 109.32538 * 48.99571 * 14 13 12 27 27 H 1.08998 * 108.51372 * 301.55279 * 15 14 13 28 28 H 1.08994 * 108.50960 * 184.05810 * 15 14 13 29 29 H 0.96702 * 114.00022 * 55.11117 * 17 16 15 30 30 H 1.08997 * 109.47063 * 59.95176 * 18 16 15 31 31 H 1.09002 * 109.47172 * 179.97438 * 18 16 15 32 32 H 1.08999 * 109.36547 * 212.06924 * 20 16 15 33 33 H 1.09001 * 109.36388 * 331.68898 * 20 16 15 34 34 H 1.09000 * 108.94656 * 258.55776 * 21 12 9 35 35 H 1.09002 * 108.94064 * 17.26609 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7666 -1.1940 -0.0012 10 8 4.1683 -0.7653 1.2926 11 8 4.1673 -0.5384 -1.1966 12 7 4.2567 -2.7693 -0.1450 13 6 4.3582 -3.5754 1.0509 14 6 5.7777 -3.4336 1.6540 15 6 6.7635 -4.1234 0.8078 16 6 6.8927 -3.5513 -0.6006 17 8 6.7131 -2.1342 -0.5579 18 6 8.2810 -3.8734 -1.1571 19 9 9.2575 -3.3045 -0.3324 20 6 5.8393 -4.1656 -1.4892 21 6 4.5713 -3.2926 -1.4888 22 1 -0.4851 0.8400 0.0004 23 1 4.1727 -4.6201 0.8013 24 1 3.6195 -3.2398 1.7787 25 1 5.7907 -3.8704 2.6525 26 1 6.0368 -2.3770 1.7218 27 1 6.4790 -5.1728 0.7303 28 1 7.7370 -4.0674 1.2948 29 1 7.3082 -1.6806 0.0548 30 1 8.4177 -4.9543 -1.1895 31 1 8.3729 -3.4649 -2.1635 32 1 6.2246 -4.2434 -2.5058 33 1 5.5919 -5.1613 -1.1211 34 1 3.7302 -3.8891 -1.8422 35 1 4.7206 -2.4541 -2.1691 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192950739.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:28 Heat of formation + Delta-G solvation = -176.363324 kcal Electronic energy + Delta-G solvation = -22336.070774 eV Core-core repulsion = 18796.499245 eV Total energy + Delta-G solvation = -3539.571529 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.78034 -39.37166 -35.59791 -35.28664 -34.20790 -32.96444 -32.66303 -32.29937 -27.81072 -26.29548 -25.56198 -23.48126 -20.85600 -20.07922 -18.60032 -17.21524 -16.94054 -16.55322 -16.27437 -16.10126 -15.50846 -15.30900 -14.93820 -14.17998 -13.86759 -13.39284 -13.24062 -13.16248 -12.84704 -12.80148 -12.45913 -12.20496 -11.79106 -11.49797 -11.31692 -11.19577 -10.96937 -10.77138 -10.72278 -10.43841 -10.37485 -10.22919 -10.13208 -9.77316 -9.66730 -9.16200 -8.93750 -8.03988 -6.74348 -5.26256 2.22481 3.12551 3.22903 3.31227 4.00836 4.14644 4.26388 4.39706 4.65843 4.67928 4.74805 4.89167 5.01519 5.22558 5.30627 5.45946 5.54299 5.59243 5.66437 5.72604 5.89403 6.00422 6.04521 6.09680 6.17292 6.27673 6.37877 6.42825 6.68588 6.81158 7.55137 7.65805 7.82174 8.27854 8.78102 10.38461 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032797 B = 0.006785 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.523527 B = 4125.606298 C = 4278.433811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.151 3.849 3 Si 0.815 3.185 4 H -0.246 1.246 5 H -0.260 1.260 6 H -0.230 1.230 7 C -1.024 5.024 8 H 0.118 0.882 9 S 2.689 3.311 10 O -1.010 7.010 11 O -1.006 7.006 12 N -0.982 5.982 13 C 0.135 3.865 14 C -0.140 4.140 15 C -0.141 4.141 16 C 0.113 3.887 17 O -0.534 6.534 18 C 0.036 3.964 19 F -0.217 7.217 20 C -0.117 4.117 21 C 0.136 3.864 22 H 0.279 0.721 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.374 0.626 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.611 -10.465 -1.221 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.068 4.068 3 Si 0.636 3.364 4 H -0.170 1.170 5 H -0.184 1.184 6 H -0.153 1.153 7 C -1.158 5.158 8 H 0.136 0.864 9 S 2.791 3.209 10 O -1.000 7.000 11 O -0.996 6.996 12 N -0.817 5.817 13 C 0.008 3.992 14 C -0.179 4.179 15 C -0.179 4.179 16 C 0.071 3.929 17 O -0.340 6.340 18 C -0.019 4.019 19 F -0.198 7.198 20 C -0.156 4.156 21 C 0.010 3.990 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.222 0.778 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.582 -9.824 -1.585 16.042 hybrid contribution 0.077 0.391 0.437 0.591 sum 12.659 -9.432 -1.148 15.828 Atomic orbital electron populations 1.70004 1.06631 1.28916 1.40146 1.24465 0.94785 0.98897 0.88632 0.87655 0.82649 0.84325 0.81738 1.16962 1.18405 1.15290 1.30784 1.16750 1.01930 1.66316 0.86425 1.01124 0.76281 0.70500 0.73029 1.93411 1.85045 1.79387 1.42198 1.93342 1.85005 1.72206 1.49056 1.56854 1.82985 1.31639 1.10187 1.20993 0.95979 0.95795 0.86452 1.21233 0.95930 1.02705 0.98053 1.21119 1.00574 1.00696 0.95527 1.21168 0.92629 0.83499 0.95557 1.86748 1.63039 1.17060 1.67116 1.22898 0.86291 0.98862 0.93837 1.92736 1.64863 1.87227 1.75022 1.21766 0.95386 0.99160 0.99333 1.21198 0.94368 0.98970 0.84440 0.91040 0.91684 0.90306 0.91262 0.90185 0.91510 0.91926 0.77804 0.90279 0.89879 0.90453 0.90462 0.92654 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.47 13.96 55.43 0.77 -23.70 16 2 C 0.15 4.46 5.47 -17.82 -0.10 4.36 16 3 Si 0.82 21.59 26.32 -169.99 -4.47 17.12 16 4 H -0.25 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.23 -6.20 5.89 56.52 0.33 -5.87 16 7 C -1.02 -29.42 10.29 30.60 0.31 -29.11 16 8 H 0.12 3.42 8.06 -52.48 -0.42 2.99 16 9 S 2.69 68.41 3.48 -107.50 -0.37 68.04 16 10 O -1.01 -27.14 14.82 -57.17 -0.85 -27.98 16 11 O -1.01 -27.27 14.64 -57.17 -0.84 -28.10 16 12 N -0.98 -19.07 1.92 -113.30 -0.22 -19.29 16 13 C 0.14 2.23 5.26 -4.08 -0.02 2.21 16 14 C -0.14 -2.04 5.43 -28.58 -0.16 -2.19 16 15 C -0.14 -1.68 4.45 -29.79 -0.13 -1.82 16 16 C 0.11 1.42 0.79 -91.90 -0.07 1.35 16 17 O -0.53 -8.67 9.29 -35.23 -0.33 -8.99 16 18 C 0.04 0.37 6.38 37.16 0.24 0.61 16 19 F -0.22 -2.69 16.23 2.25 0.04 -2.65 16 20 C -0.12 -1.40 5.18 -27.30 -0.14 -1.54 16 21 C 0.14 2.24 5.68 -2.94 -0.02 2.22 16 22 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 24 H 0.08 1.41 7.80 -51.93 -0.41 1.00 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 1.37 6.34 -51.93 -0.33 1.04 16 27 H 0.07 0.67 7.36 -51.93 -0.38 0.29 16 28 H 0.06 0.71 7.17 -51.93 -0.37 0.34 16 29 H 0.37 5.41 8.39 45.56 0.38 5.79 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.08 0.75 7.74 -51.93 -0.40 0.35 16 33 H 0.08 0.75 7.32 -51.93 -0.38 0.37 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.10 1.82 6.56 -51.93 -0.34 1.48 16 LS Contribution 285.34 15.07 4.30 4.30 Total: -1.00 -34.22 285.34 -6.02 -40.24 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.96 Total: 4.94 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -0.09 Total: -23.91 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.56 Total: -42.99 kcal Atomic # 8 Polarization: -63.07 SS G_CDS: -2.01 Total: -65.08 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.47 Total: 17.12 kcal Atomic # 16 Polarization: 68.41 SS G_CDS: -0.37 Total: 68.04 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.22 -6.02 -40.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950739.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.128 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds