Wall clock time and date at job start Fri Apr 10 2020 14:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86791 * 120.00036 * 2 1 4 4 H 1.48503 * 109.47136 * 270.00163 * 3 2 1 5 5 H 1.48508 * 109.47480 * 29.99925 * 3 2 1 6 6 H 1.48504 * 109.47336 * 150.00103 * 3 2 1 7 7 C 1.37875 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99965 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99963 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40292 * 71.40340 * 9 7 2 11 11 O 1.42098 * 106.40440 * 298.48274 * 9 7 2 12 12 N 1.65603 * 107.21915 * 184.94302 * 9 7 2 13 13 C 1.44581 * 118.64433 * 264.92904 * 12 9 7 14 14 C 1.54859 * 109.60041 * 270.70478 * 13 12 9 15 15 C 1.47100 * 110.31890 * 288.73189 * 14 13 12 16 16 C 1.52565 * 114.32628 * 62.80152 * 15 14 13 17 17 F 1.39905 * 109.48892 * 34.95513 * 16 15 14 18 18 C 1.53005 * 109.49065 * 155.02032 * 16 15 14 19 19 O 1.42902 * 109.47007 * 299.99856 * 18 16 15 20 20 C 1.50879 * 109.35973 * 274.98601 * 16 15 14 21 21 C 1.47602 * 118.64255 * 84.65682 * 12 9 7 22 22 H 0.96996 * 119.99616 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.44768 * 30.74139 * 13 12 9 24 24 H 1.09000 * 109.44868 * 150.68460 * 13 12 9 25 25 H 1.09001 * 109.33135 * 48.99069 * 14 13 12 26 26 H 1.08999 * 109.32984 * 168.47289 * 14 13 12 27 27 H 1.09005 * 108.51078 * 184.05163 * 15 14 13 28 28 H 1.09003 * 108.51396 * 301.54710 * 15 14 13 29 29 H 1.08999 * 109.47013 * 59.99833 * 18 16 15 30 30 H 1.09003 * 109.46946 * 179.97438 * 18 16 15 31 31 H 0.96698 * 113.99832 * 179.97438 * 19 18 16 32 32 H 1.08997 * 109.36723 * 212.07442 * 20 16 15 33 33 H 1.08999 * 109.36669 * 331.69423 * 20 16 15 34 34 H 1.09004 * 108.94730 * 258.57812 * 21 12 9 35 35 H 1.08994 * 108.94812 * 17.20616 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.5459 -2.8498 -1.2923 11 8 0.3604 -2.7427 1.1979 12 7 2.2432 -3.9325 0.1351 13 6 2.7235 -4.5704 -1.0703 14 6 1.8108 -5.7711 -1.4216 15 6 2.0181 -6.8679 -0.4635 16 6 1.6503 -6.5225 0.9763 17 9 0.5470 -5.6623 0.9827 18 6 1.3031 -7.8045 1.7360 19 8 0.1953 -8.4481 1.1029 20 6 2.8216 -5.8441 1.6427 21 6 2.7143 -4.3133 1.4811 22 1 -0.4849 0.8400 0.0004 23 1 2.7108 -3.8526 -1.8905 24 1 3.7426 -4.9235 -0.9127 25 1 0.7684 -5.4542 -1.3872 26 1 2.0458 -6.1209 -2.4268 27 1 1.4176 -7.7211 -0.7790 28 1 3.0682 -7.1587 -0.4923 29 1 2.1633 -8.4738 1.7314 30 1 1.0408 -7.5574 2.7647 31 1 -0.0798 -9.2698 1.5321 32 1 2.8297 -6.0958 2.7032 33 1 3.7482 -6.1894 1.1841 34 1 3.6935 -3.8663 1.6530 35 1 2.0156 -3.9269 2.2230 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951628.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:37 Heat of formation + Delta-G solvation = -184.006693 kcal Electronic energy + Delta-G solvation = -22237.599013 eV Core-core repulsion = 18697.696042 eV Total energy + Delta-G solvation = -3539.902970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.093 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -47.19228 -37.95845 -36.58888 -35.15265 -33.75607 -33.15405 -32.86370 -32.37942 -27.44878 -26.04873 -25.46456 -23.30213 -20.75350 -19.71732 -18.65191 -17.53996 -16.98521 -16.27707 -15.87287 -15.76483 -15.52240 -14.87204 -14.51396 -14.11638 -13.79418 -13.56480 -13.27328 -12.85842 -12.79575 -12.38502 -12.12315 -11.92477 -11.67104 -11.27181 -11.17295 -11.10978 -10.88451 -10.66127 -10.55569 -10.35407 -10.15209 -10.07134 -10.06046 -9.86793 -9.80465 -9.17940 -8.75682 -8.04728 -6.61324 -5.23811 2.42719 3.10462 3.16997 3.23378 3.97145 4.12011 4.56079 4.62242 4.65568 4.71390 4.90772 5.04468 5.15159 5.27923 5.42248 5.43219 5.61958 5.73404 5.80610 5.92895 6.06359 6.13672 6.17013 6.24695 6.29275 6.43267 6.45679 6.62607 6.85232 6.91953 7.39474 7.49382 7.79918 8.04576 8.96410 10.31667 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035867 B = 0.006123 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.471440 B = 4571.617791 C = 4608.335498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.026 5.026 8 H 0.100 0.900 9 S 2.718 3.282 10 O -1.006 7.006 11 O -0.996 6.996 12 N -1.003 6.003 13 C 0.132 3.868 14 C -0.144 4.144 15 C -0.130 4.130 16 C 0.132 3.868 17 F -0.185 7.185 18 C 0.057 3.943 19 O -0.561 6.561 20 C -0.151 4.151 21 C 0.128 3.872 22 H 0.290 0.710 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.378 0.622 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.925 -14.074 2.937 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.742 3.258 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.159 5.159 8 H 0.118 0.882 9 S 2.818 3.182 10 O -0.997 6.997 11 O -0.986 6.986 12 N -0.838 5.838 13 C 0.005 3.995 14 C -0.184 4.184 15 C -0.167 4.167 16 C 0.113 3.887 17 F -0.165 7.165 18 C -0.021 4.021 19 O -0.366 6.366 20 C -0.190 4.190 21 C 0.002 3.998 22 H 0.100 0.900 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.224 0.776 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.865 -13.617 2.479 15.450 hybrid contribution 0.983 0.681 0.466 1.284 sum 7.848 -12.936 2.945 15.415 Atomic orbital electron populations 1.69922 1.06753 1.30564 1.40215 1.24756 0.94441 1.00736 0.88629 0.86204 0.80167 0.80256 0.79139 1.19215 1.19982 1.18725 1.30751 1.06096 1.12365 1.66680 0.88194 1.00509 0.72175 0.72683 0.72847 1.93340 1.76088 1.87506 1.42732 1.93331 1.68782 1.87423 1.49103 1.57567 1.63397 1.53757 1.09031 1.21017 0.96482 0.94838 0.87184 1.21249 1.03047 0.95921 0.98145 1.20947 1.01807 1.00315 0.93676 1.20328 0.84576 0.86923 0.96889 1.92953 1.54890 1.71247 1.97459 1.22853 0.89455 0.93861 0.95945 1.86568 1.50970 1.41939 1.57148 1.22424 0.97673 0.97465 1.01485 1.21366 1.00556 0.92738 0.85141 0.89989 0.90017 0.91791 0.90265 0.90924 0.90746 0.91475 0.92256 0.92446 0.77570 0.90132 0.90098 0.92101 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.68 13.10 55.43 0.73 -24.96 16 2 C 0.13 3.80 5.46 -17.82 -0.10 3.70 16 3 Si 0.92 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 7 C -1.03 -29.20 9.75 30.60 0.30 -28.91 16 8 H 0.10 2.60 7.81 -52.48 -0.41 2.19 16 9 S 2.72 75.52 4.55 -107.50 -0.49 75.03 16 10 O -1.01 -30.40 16.32 -57.17 -0.93 -31.34 16 11 O -1.00 -30.37 16.16 -57.17 -0.92 -31.30 16 12 N -1.00 -21.04 1.95 -113.10 -0.22 -21.27 16 13 C 0.13 2.34 5.24 -4.09 -0.02 2.32 16 14 C -0.14 -2.44 5.48 -28.58 -0.16 -2.59 16 15 C -0.13 -1.85 4.54 -29.79 -0.14 -1.98 16 16 C 0.13 2.01 0.96 -91.90 -0.09 1.92 16 17 F -0.19 -3.94 13.23 2.25 0.03 -3.91 16 18 C 0.06 0.67 6.00 37.16 0.22 0.89 16 19 O -0.56 -7.01 12.61 -35.23 -0.44 -7.45 16 20 C -0.15 -1.99 5.20 -27.12 -0.14 -2.13 16 21 C 0.13 2.24 5.78 -2.76 -0.02 2.22 16 22 H 0.29 7.90 8.31 -40.82 -0.34 7.56 16 23 H 0.08 1.54 7.53 -51.93 -0.39 1.14 16 24 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 25 H 0.08 1.65 7.13 -51.93 -0.37 1.28 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.05 7.03 -51.93 -0.37 0.68 16 28 H 0.07 0.75 7.36 -51.93 -0.38 0.37 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.38 2.62 9.12 45.56 0.42 3.03 16 32 H 0.08 0.85 7.74 -51.93 -0.40 0.45 16 33 H 0.08 0.85 7.32 -51.93 -0.38 0.47 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.88 6.77 -51.93 -0.35 1.53 16 LS Contribution 293.90 15.07 4.43 4.43 Total: -1.00 -38.38 293.90 -6.86 -45.24 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.88 Total: 4.06 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -0.14 Total: -24.56 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.51 Total: -46.22 kcal Atomic # 8 Polarization: -67.78 SS G_CDS: -2.30 Total: -70.08 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.03 Total: -3.91 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 75.52 SS G_CDS: -0.49 Total: 75.03 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -38.38 -6.86 -45.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951628.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.764 kcal (2) G-P(sol) polarization free energy of solvation -38.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds