Wall clock time and date at job start Fri Apr 10 2020 14:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86791 * 120.00036 * 2 1 4 4 H 1.48503 * 109.47136 * 270.00163 * 3 2 1 5 5 H 1.48508 * 109.47480 * 29.99925 * 3 2 1 6 6 H 1.48504 * 109.47336 * 150.00103 * 3 2 1 7 7 C 1.37875 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99965 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99963 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40292 * 71.40340 * 9 7 2 11 11 O 1.42098 * 106.40440 * 298.48274 * 9 7 2 12 12 N 1.65603 * 107.21915 * 184.94302 * 9 7 2 13 13 C 1.44581 * 118.64433 * 264.92904 * 12 9 7 14 14 C 1.54859 * 109.60041 * 270.70478 * 13 12 9 15 15 C 1.47100 * 110.31890 * 288.73189 * 14 13 12 16 16 C 1.52565 * 114.32628 * 62.80152 * 15 14 13 17 17 F 1.39905 * 109.48892 * 34.95513 * 16 15 14 18 18 C 1.53005 * 109.49065 * 155.02032 * 16 15 14 19 19 O 1.42902 * 109.47007 * 299.99856 * 18 16 15 20 20 C 1.50879 * 109.35973 * 274.98601 * 16 15 14 21 21 C 1.47602 * 118.64255 * 84.65682 * 12 9 7 22 22 H 0.96996 * 119.99616 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.44768 * 30.74139 * 13 12 9 24 24 H 1.09000 * 109.44868 * 150.68460 * 13 12 9 25 25 H 1.09001 * 109.33135 * 48.99069 * 14 13 12 26 26 H 1.08999 * 109.32984 * 168.47289 * 14 13 12 27 27 H 1.09005 * 108.51078 * 184.05163 * 15 14 13 28 28 H 1.09003 * 108.51396 * 301.54710 * 15 14 13 29 29 H 1.08999 * 109.47013 * 59.99833 * 18 16 15 30 30 H 1.09003 * 109.46946 * 179.97438 * 18 16 15 31 31 H 0.96698 * 113.99832 * 179.97438 * 19 18 16 32 32 H 1.08997 * 109.36723 * 212.07442 * 20 16 15 33 33 H 1.08999 * 109.36669 * 331.69423 * 20 16 15 34 34 H 1.09004 * 108.94730 * 258.57812 * 21 12 9 35 35 H 1.08994 * 108.94812 * 17.20616 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.5459 -2.8498 -1.2923 11 8 0.3604 -2.7427 1.1979 12 7 2.2432 -3.9325 0.1351 13 6 2.7235 -4.5704 -1.0703 14 6 1.8108 -5.7711 -1.4216 15 6 2.0181 -6.8679 -0.4635 16 6 1.6503 -6.5225 0.9763 17 9 0.5470 -5.6623 0.9827 18 6 1.3031 -7.8045 1.7360 19 8 0.1953 -8.4481 1.1029 20 6 2.8216 -5.8441 1.6427 21 6 2.7143 -4.3133 1.4811 22 1 -0.4849 0.8400 0.0004 23 1 2.7108 -3.8526 -1.8905 24 1 3.7426 -4.9235 -0.9127 25 1 0.7684 -5.4542 -1.3872 26 1 2.0458 -6.1209 -2.4268 27 1 1.4176 -7.7211 -0.7790 28 1 3.0682 -7.1587 -0.4923 29 1 2.1633 -8.4738 1.7314 30 1 1.0408 -7.5574 2.7647 31 1 -0.0798 -9.2698 1.5321 32 1 2.8297 -6.0958 2.7032 33 1 3.7482 -6.1894 1.1841 34 1 3.6935 -3.8663 1.6530 35 1 2.0156 -3.9269 2.2230 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951628.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:36 Heat of formation + Delta-G solvation = -217.099921 kcal Electronic energy + Delta-G solvation = -22239.034043 eV Core-core repulsion = 18697.696042 eV Total energy + Delta-G solvation = -3541.338000 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.093 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.54219 -39.17950 -37.63058 -37.37970 -36.01882 -35.18261 -34.31779 -33.60555 -28.59976 -28.23377 -26.76498 -24.43819 -22.19806 -20.90490 -20.66868 -18.87955 -18.38994 -18.27296 -17.27439 -17.18898 -16.81398 -16.60252 -16.00892 -15.73868 -15.38303 -15.08321 -14.54791 -14.32383 -14.08220 -13.92543 -13.60964 -13.45975 -13.24006 -13.01555 -12.98443 -12.54889 -12.44148 -12.39534 -12.29437 -12.12643 -11.86533 -11.54693 -11.33340 -11.25863 -11.21098 -10.92662 -10.87329 -9.65083 -8.73267 -7.49300 0.40910 1.31962 1.33555 1.49615 2.20776 2.57082 2.85716 3.18341 3.53853 3.67811 3.82719 3.86616 3.97607 4.14710 4.19073 4.28268 4.42648 4.49760 4.52501 4.57530 4.72106 4.83608 4.91745 4.93634 5.00059 5.09792 5.17050 5.27456 5.28686 5.45940 5.50827 5.89588 6.20359 6.77037 6.90696 8.21266 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035867 B = 0.006123 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.471440 B = 4571.617791 C = 4608.335498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.064 3.936 3 Si 0.993 3.007 4 H -0.254 1.254 5 H -0.262 1.262 6 H -0.244 1.244 7 C -1.046 5.046 8 H 0.120 0.880 9 S 2.715 3.285 10 O -1.048 7.048 11 O -1.039 7.039 12 N -0.995 5.995 13 C 0.122 3.878 14 C -0.144 4.144 15 C -0.128 4.128 16 C 0.102 3.898 17 F -0.231 7.231 18 C 0.061 3.939 19 O -0.591 6.591 20 C -0.141 4.141 21 C 0.114 3.886 22 H 0.298 0.702 23 H 0.061 0.939 24 H 0.119 0.881 25 H 0.022 0.978 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.399 0.601 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.619 -15.269 3.477 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.148 4.148 3 Si 0.811 3.189 4 H -0.178 1.178 5 H -0.186 1.186 6 H -0.166 1.166 7 C -1.179 5.179 8 H 0.138 0.862 9 S 2.817 3.183 10 O -1.039 7.039 11 O -1.029 7.029 12 N -0.834 5.834 13 C -0.004 4.004 14 C -0.183 4.183 15 C -0.165 4.165 16 C 0.083 3.917 17 F -0.212 7.212 18 C -0.017 4.017 19 O -0.400 6.400 20 C -0.180 4.180 21 C -0.011 4.011 22 H 0.108 0.892 23 H 0.079 0.921 24 H 0.137 0.863 25 H 0.041 0.959 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.250 0.750 32 H 0.128 0.872 33 H 0.141 0.859 34 H 0.109 0.891 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.546 -14.856 3.030 18.469 hybrid contribution -0.173 0.936 0.288 0.994 sum 10.373 -13.920 3.318 17.674 Atomic orbital electron populations 1.70038 1.09015 1.32245 1.41672 1.26147 0.95393 1.05710 0.87536 0.85097 0.79204 0.74467 0.80157 1.17770 1.18644 1.16647 1.31110 1.07182 1.13082 1.66528 0.86217 1.00121 0.73038 0.73756 0.71369 1.93268 1.77968 1.88340 1.44290 1.93261 1.71004 1.88338 1.50316 1.56988 1.62352 1.52410 1.11604 1.21355 0.99281 0.94496 0.85242 1.21254 0.99504 0.96734 1.00811 1.20955 1.04550 0.98722 0.92309 1.21053 0.83981 0.88128 0.98502 1.92872 1.57529 1.73057 1.97712 1.22870 0.90826 0.92955 0.95047 1.86511 1.51762 1.43509 1.58181 1.22456 0.98448 0.93360 1.03732 1.21706 1.00647 0.96582 0.82131 0.89220 0.92073 0.86321 0.95857 0.88341 0.90896 0.86865 0.87808 0.92166 0.75030 0.87237 0.85863 0.89084 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.67 13.10 21.45 0.28 -56.39 16 2 C 0.06 3.74 5.46 84.65 0.46 4.20 16 3 Si 0.99 42.65 29.54 68.60 2.03 44.67 16 4 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.24 -9.59 7.11 99.48 0.71 -8.88 16 7 C -1.05 -60.60 9.75 67.73 0.66 -59.94 16 8 H 0.12 6.18 7.81 -2.91 -0.02 6.16 16 9 S 2.72 157.84 4.55 -56.49 -0.26 157.58 16 10 O -1.05 -67.36 16.32 -128.00 -2.09 -69.45 16 11 O -1.04 -67.33 16.16 -128.00 -2.07 -69.40 16 12 N -1.00 -41.71 1.95 -511.75 -1.00 -42.70 16 13 C 0.12 4.17 5.24 87.37 0.46 4.63 16 14 C -0.14 -4.76 5.48 29.39 0.16 -4.60 16 15 C -0.13 -3.27 4.54 28.62 0.13 -3.14 16 16 C 0.10 2.88 0.96 -11.63 -0.01 2.87 16 17 F -0.23 -10.18 13.23 44.97 0.59 -9.58 16 18 C 0.06 1.23 6.00 71.98 0.43 1.66 16 19 O -0.59 -13.82 12.61 -148.98 -1.88 -15.70 16 20 C -0.14 -3.16 5.20 30.35 0.16 -3.00 16 21 C 0.11 3.82 5.78 86.61 0.50 4.32 16 22 H 0.30 16.83 8.31 -92.71 -0.77 16.06 16 23 H 0.06 2.31 7.53 -2.39 -0.02 2.30 16 24 H 0.12 2.76 8.06 -2.39 -0.02 2.74 16 25 H 0.02 1.01 7.13 -2.39 -0.02 0.99 16 26 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.07 1.89 7.03 -2.38 -0.02 1.87 16 28 H 0.11 1.85 7.36 -2.39 -0.02 1.84 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 31 H 0.40 4.79 9.12 -74.06 -0.68 4.11 16 32 H 0.11 1.83 7.74 -2.39 -0.02 1.82 16 33 H 0.12 1.73 7.32 -2.39 -0.02 1.72 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.06 2.42 6.77 -2.39 -0.02 2.41 16 Total: -1.00 -91.92 293.90 -1.01 -92.92 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.43 Total: 21.04 kcal Atomic # 6 Polarization: -55.95 SS G_CDS: 2.95 Total: -53.00 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -0.72 Total: -99.10 kcal Atomic # 8 Polarization: -148.50 SS G_CDS: -6.04 Total: -154.54 kcal Atomic # 9 Polarization: -10.18 SS G_CDS: 0.59 Total: -9.58 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 157.84 SS G_CDS: -0.26 Total: 157.58 kcal Total: -91.92 -1.01 -92.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951628.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.178 kcal (2) G-P(sol) polarization free energy of solvation -91.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds