Wall clock time and date at job start Fri Apr 10 2020 14:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38204 * 120.08688 * 2 1 4 4 F 1.35101 * 119.95356 * 359.97438 * 3 2 1 5 5 C 1.38556 * 120.09414 * 180.25193 * 3 2 1 6 6 C 1.38355 * 120.27744 * 359.44550 * 5 3 2 7 7 C 1.37930 * 120.17914 * 0.55697 * 6 5 3 8 8 C 1.39578 * 120.09356 * 179.97438 * 2 1 3 9 9 C 1.47737 * 120.13276 * 0.04861 * 8 2 1 10 10 O 1.21471 * 120.00488 * 6.19440 * 9 8 2 11 11 O 1.34715 * 119.99997 * 186.20116 * 9 8 2 12 12 C 1.45193 * 117.00451 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47606 * 179.97438 * 12 11 9 14 14 O 1.21290 * 119.99606 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00138 * 179.97438 * 13 12 11 16 16 C 1.37097 * 120.00014 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99930 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99978 * 180.02562 * 16 15 13 19 19 N 1.31406 * 120.00062 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99709 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47058 * 59.99685 * 20 18 16 22 22 H 1.48495 * 109.46844 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47139 * 299.99821 * 20 18 16 24 24 H 1.09001 * 109.47164 * 96.57121 * 1 2 3 25 25 H 1.08999 * 109.47429 * 216.57728 * 1 2 3 26 26 H 1.09002 * 109.47243 * 336.57321 * 1 2 3 27 27 H 1.08002 * 119.86132 * 179.71854 * 5 3 2 28 28 H 1.08002 * 119.91024 * 180.27633 * 6 5 3 29 29 H 1.08000 * 120.05138 * 179.70450 * 7 6 5 30 30 H 1.09001 * 109.46893 * 300.00141 * 12 11 9 31 31 H 1.09003 * 109.46926 * 59.98964 * 12 11 9 32 32 H 0.97003 * 120.00390 * 359.97438 * 15 13 12 33 33 H 0.96997 * 120.00026 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1998 1.1958 0.0000 4 9 1.5251 2.3663 -0.0005 5 6 3.5854 1.1960 -0.0053 6 6 4.2831 0.0013 0.0010 7 6 3.6032 -1.1988 0.0010 8 6 2.2068 -1.2076 0.0005 9 6 1.4732 -2.4900 0.0000 10 8 0.2639 -2.4979 -0.1144 11 8 2.1454 -3.6506 0.1266 12 6 1.3600 -4.8717 0.1173 13 6 2.2755 -6.0592 0.2678 14 8 3.4724 -5.8927 0.3722 15 7 1.7644 -7.3061 0.2865 16 6 2.5974 -8.3863 0.4240 17 1 3.6631 -8.2381 0.5170 18 6 2.0705 -9.6720 0.4427 19 7 0.7738 -9.8523 0.3291 20 14 3.2055 -11.1438 0.6294 21 1 3.9438 -11.0399 1.9137 22 1 2.4021 -12.3926 0.6205 23 1 4.1728 -11.1689 -0.4970 24 1 -0.3633 -0.1176 -1.0209 25 1 -0.3634 -0.8252 0.6124 26 1 -0.3634 0.9430 0.4086 27 1 4.1230 2.1327 -0.0099 28 1 5.3631 0.0084 0.0014 29 1 4.1500 -2.1301 0.0011 30 1 0.6496 -4.8531 0.9438 31 1 0.8183 -4.9481 -0.8256 32 1 0.8072 -7.4393 0.2034 33 1 0.4060 -10.7498 0.3425 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817244633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:42 Heat of formation + Delta-G solvation = -140.115354 kcal Electronic energy + Delta-G solvation = -20774.175529 eV Core-core repulsion = 17100.731878 eV Total energy + Delta-G solvation = -3673.443650 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.16333 -40.68770 -38.95210 -38.03276 -36.23369 -34.03052 -32.96430 -31.48610 -31.27697 -28.48539 -27.30470 -24.90913 -24.04764 -22.04330 -21.06316 -19.60774 -18.41390 -18.10013 -17.05771 -16.54370 -16.41381 -16.05126 -15.99384 -15.87707 -15.39904 -14.57193 -14.24986 -14.06857 -13.78052 -13.49340 -13.31597 -13.05438 -12.61858 -12.28040 -12.18311 -12.12135 -12.05294 -11.63735 -11.49780 -11.12990 -10.50674 -10.47001 -10.32406 -10.14562 -9.61827 -9.33464 -8.91683 -8.55591 -8.10761 -6.52033 -3.94268 0.36444 0.87120 2.39363 2.55104 3.13899 3.21628 3.26015 3.37823 3.71234 3.94831 4.09557 4.37243 4.43543 4.61620 4.70686 4.90729 5.01887 5.12854 5.31794 5.40032 5.51575 5.58432 5.66086 5.70682 5.79445 5.93652 5.98983 6.01255 6.14631 6.47760 6.60538 7.45562 7.75589 7.92430 8.45854 9.04661 9.36721 9.86373 10.65082 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.003108 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.320584 B = 9006.232554 C = 9630.478398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.053 4.053 3 C 0.078 3.922 4 F -0.135 7.135 5 C -0.116 4.116 6 C -0.112 4.112 7 C -0.062 4.062 8 C -0.099 4.099 9 C 0.504 3.496 10 O -0.501 6.501 11 O -0.319 6.319 12 C 0.062 3.938 13 C 0.438 3.562 14 O -0.577 6.577 15 N -0.551 5.551 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.897 5.897 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.153 0.847 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.395 0.605 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 19.011 -0.930 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.055 4.055 3 C 0.059 3.941 4 F -0.113 7.113 5 C -0.135 4.135 6 C -0.130 4.130 7 C -0.080 4.080 8 C -0.100 4.100 9 C 0.349 3.651 10 O -0.392 6.392 11 O -0.234 6.234 12 C -0.016 4.016 13 C 0.223 3.777 14 O -0.461 6.461 15 N -0.188 5.188 16 C -0.433 4.433 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.537 5.537 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.197 1.197 24 H 0.100 0.900 25 H 0.118 0.882 26 H 0.083 0.917 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.171 0.829 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.229 0.771 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.480 18.928 -0.892 19.006 hybrid contribution -0.369 -0.672 -0.001 0.766 sum 1.111 18.256 -0.893 18.311 Atomic orbital electron populations 1.21083 0.88832 1.03847 1.04285 1.20007 0.97888 0.90341 0.97232 1.17258 0.89947 0.80793 1.06084 1.91496 1.80372 1.45317 1.94140 1.21414 0.92078 1.00288 0.99745 1.21040 1.00859 0.90921 1.00187 1.21741 0.92720 1.00001 0.93535 1.18780 0.93587 0.89703 1.07914 1.21022 0.85832 0.84757 0.73464 1.90786 1.14841 1.87806 1.45729 1.86579 1.40496 1.13912 1.82368 1.22790 0.93644 0.81505 1.03622 1.19284 0.88771 0.83560 0.86123 1.90556 1.15241 1.85086 1.55192 1.41691 1.10343 1.03740 1.63072 1.19681 0.92518 0.83453 1.47647 0.87634 1.25313 0.96422 0.99104 0.96842 1.69601 1.10993 1.23897 1.49235 0.85855 0.79358 0.79432 0.79236 1.19733 1.20859 1.19730 0.89963 0.88162 0.91676 0.84150 0.83946 0.82929 0.89361 0.89355 0.77131 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 8.61 36.00 0.31 -1.14 16 2 C -0.05 -0.65 5.92 -104.14 -0.62 -1.27 16 3 C 0.08 0.85 7.24 -39.48 -0.29 0.56 16 4 F -0.13 -1.48 16.37 2.25 0.04 -1.44 16 5 C -0.12 -1.02 10.02 -39.42 -0.39 -1.42 16 6 C -0.11 -0.99 10.03 -39.65 -0.40 -1.39 16 7 C -0.06 -0.71 9.61 -39.17 -0.38 -1.09 16 8 C -0.10 -1.31 5.87 -104.99 -0.62 -1.93 16 9 C 0.50 8.02 7.83 34.61 0.27 8.29 16 10 O -0.50 -8.36 13.14 -19.24 -0.25 -8.61 16 11 O -0.32 -5.79 9.02 -47.21 -0.43 -6.21 16 12 C 0.06 1.15 5.95 36.01 0.21 1.36 16 13 C 0.44 10.33 7.86 -10.99 -0.09 10.24 16 14 O -0.58 -15.62 16.08 -14.11 -0.23 -15.85 16 15 N -0.55 -13.71 5.29 -10.96 -0.06 -13.77 16 16 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 17 H 0.11 2.99 7.16 -52.48 -0.38 2.61 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 19 N -0.90 -23.82 13.05 55.50 0.72 -23.09 16 20 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.10 1.30 5.86 -51.93 -0.30 1.00 16 26 H 0.06 0.66 7.46 -51.93 -0.39 0.27 16 27 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 29 H 0.15 1.82 7.63 -52.49 -0.40 1.42 16 30 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 302.77 15.07 4.56 4.56 Total: -1.00 -30.99 302.77 -5.92 -36.91 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.04 Total: 7.68 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -2.22 Total: 4.38 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.67 Total: -36.86 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.91 Total: -30.67 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.99 -5.92 -36.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817244633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.208 kcal (2) G-P(sol) polarization free energy of solvation -30.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds