Wall clock time and date at job start Fri Apr 10 2020 14:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38204 * 120.08688 * 2 1 4 4 F 1.35101 * 119.95356 * 359.97438 * 3 2 1 5 5 C 1.38556 * 120.09414 * 180.25193 * 3 2 1 6 6 C 1.38355 * 120.27744 * 359.44550 * 5 3 2 7 7 C 1.37930 * 120.17914 * 0.55697 * 6 5 3 8 8 C 1.39578 * 120.09356 * 179.97438 * 2 1 3 9 9 C 1.47737 * 120.13276 * 0.04861 * 8 2 1 10 10 O 1.21471 * 120.00488 * 6.19440 * 9 8 2 11 11 O 1.34715 * 119.99997 * 186.20116 * 9 8 2 12 12 C 1.45193 * 117.00451 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47606 * 179.97438 * 12 11 9 14 14 O 1.21290 * 119.99606 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00138 * 179.97438 * 13 12 11 16 16 C 1.37097 * 120.00014 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99930 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99978 * 180.02562 * 16 15 13 19 19 N 1.31406 * 120.00062 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99709 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47058 * 59.99685 * 20 18 16 22 22 H 1.48495 * 109.46844 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47139 * 299.99821 * 20 18 16 24 24 H 1.09001 * 109.47164 * 96.57121 * 1 2 3 25 25 H 1.08999 * 109.47429 * 216.57728 * 1 2 3 26 26 H 1.09002 * 109.47243 * 336.57321 * 1 2 3 27 27 H 1.08002 * 119.86132 * 179.71854 * 5 3 2 28 28 H 1.08002 * 119.91024 * 180.27633 * 6 5 3 29 29 H 1.08000 * 120.05138 * 179.70450 * 7 6 5 30 30 H 1.09001 * 109.46893 * 300.00141 * 12 11 9 31 31 H 1.09003 * 109.46926 * 59.98964 * 12 11 9 32 32 H 0.97003 * 120.00390 * 359.97438 * 15 13 12 33 33 H 0.96997 * 120.00026 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1998 1.1958 0.0000 4 9 1.5251 2.3663 -0.0005 5 6 3.5854 1.1960 -0.0053 6 6 4.2831 0.0013 0.0010 7 6 3.6032 -1.1988 0.0010 8 6 2.2068 -1.2076 0.0005 9 6 1.4732 -2.4900 0.0000 10 8 0.2639 -2.4979 -0.1144 11 8 2.1454 -3.6506 0.1266 12 6 1.3600 -4.8717 0.1173 13 6 2.2755 -6.0592 0.2678 14 8 3.4724 -5.8927 0.3722 15 7 1.7644 -7.3061 0.2865 16 6 2.5974 -8.3863 0.4240 17 1 3.6631 -8.2381 0.5170 18 6 2.0705 -9.6720 0.4427 19 7 0.7738 -9.8523 0.3291 20 14 3.2055 -11.1438 0.6294 21 1 3.9438 -11.0399 1.9137 22 1 2.4021 -12.3926 0.6205 23 1 4.1728 -11.1689 -0.4970 24 1 -0.3633 -0.1176 -1.0209 25 1 -0.3634 -0.8252 0.6124 26 1 -0.3634 0.9430 0.4086 27 1 4.1230 2.1327 -0.0099 28 1 5.3631 0.0084 0.0014 29 1 4.1500 -2.1301 0.0011 30 1 0.6496 -4.8531 0.9438 31 1 0.8183 -4.9481 -0.8256 32 1 0.8072 -7.4393 0.2034 33 1 0.4060 -10.7498 0.3425 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817244633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:41 Heat of formation + Delta-G solvation = -158.277767 kcal Electronic energy + Delta-G solvation = -20774.963110 eV Core-core repulsion = 17100.731878 eV Total energy + Delta-G solvation = -3674.231232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.99447 -41.90412 -40.28925 -39.55028 -37.59948 -36.03659 -33.83624 -33.42715 -32.28860 -30.01119 -28.26075 -26.67497 -25.20031 -22.98334 -22.13686 -21.43951 -20.07690 -19.50260 -18.25066 -17.83977 -17.76852 -17.24012 -16.90689 -16.81065 -16.76938 -16.34421 -15.79949 -15.76905 -14.81945 -14.57926 -14.45008 -14.32439 -13.81476 -13.68863 -13.55859 -13.44715 -13.05250 -12.95976 -12.92657 -12.48601 -12.36103 -12.12723 -11.89275 -11.56925 -11.31782 -10.51788 -10.18897 -10.12127 -9.76053 -8.52356 -6.03127 -0.55706 0.03844 1.23490 1.30909 1.38066 1.44346 1.55555 1.86935 2.29222 2.48308 2.94636 3.13329 3.17817 3.48932 3.59598 3.78400 3.88150 4.00608 4.14544 4.18910 4.21411 4.52326 4.58601 4.64895 4.82406 5.00151 5.05399 5.12701 5.20676 5.36303 5.38537 5.71657 5.88573 6.43537 6.55339 7.02480 7.39474 7.92600 8.64444 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.003108 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.320584 B = 9006.232554 C = 9630.478398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C 0.071 3.929 4 F -0.135 7.135 5 C -0.098 4.098 6 C -0.099 4.099 7 C -0.069 4.069 8 C -0.121 4.121 9 C 0.504 3.496 10 O -0.514 6.514 11 O -0.335 6.335 12 C 0.072 3.928 13 C 0.437 3.563 14 O -0.616 6.616 15 N -0.557 5.557 16 C -0.339 4.339 17 H 0.086 0.914 18 C -0.008 4.008 19 N -0.916 5.916 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.270 1.270 23 H -0.269 1.269 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.176 0.824 28 H 0.178 0.822 29 H 0.143 0.857 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.400 0.600 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 20.204 -0.975 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.066 4.066 3 C 0.052 3.948 4 F -0.114 7.114 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.088 4.088 8 C -0.122 4.122 9 C 0.350 3.650 10 O -0.405 6.405 11 O -0.251 6.251 12 C -0.005 4.005 13 C 0.224 3.776 14 O -0.503 6.503 15 N -0.195 5.195 16 C -0.468 4.468 17 H 0.104 0.896 18 C -0.209 4.209 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.195 1.195 23 H -0.194 1.194 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.194 0.806 28 H 0.195 0.805 29 H 0.161 0.839 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.234 0.766 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.284 20.136 -0.940 20.287 hybrid contribution -0.615 -0.925 0.009 1.111 sum 1.668 19.210 -0.932 19.305 Atomic orbital electron populations 1.21017 0.88976 1.03829 1.03928 1.20067 0.98049 0.90635 0.97823 1.17396 0.90827 0.80191 1.06368 1.91497 1.80593 1.45138 1.94181 1.21820 0.91152 1.01721 0.96952 1.21398 1.02459 0.89650 0.98183 1.21803 0.92024 1.01007 0.93932 1.18719 0.94331 0.88560 1.10592 1.21505 0.85926 0.84759 0.72791 1.90775 1.15368 1.87857 1.46535 1.86572 1.41129 1.14341 1.83015 1.22558 0.92350 0.80141 1.05425 1.20047 0.88902 0.84412 0.84263 1.90520 1.17294 1.85865 1.56580 1.41727 1.10372 1.04001 1.63351 1.19705 0.92172 0.84963 1.49996 0.89631 1.26126 0.97947 1.01125 0.95701 1.69663 1.12126 1.24886 1.48884 0.84919 0.77613 0.76263 0.79153 1.19441 1.19469 1.19420 0.90119 0.89830 0.90337 0.80615 0.80501 0.83881 0.87410 0.87395 0.76563 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 8.61 71.24 0.61 -2.19 16 2 C -0.06 -1.52 5.92 -19.55 -0.12 -1.64 16 3 C 0.07 1.39 7.24 22.34 0.16 1.55 16 4 F -0.14 -2.67 16.37 44.97 0.74 -1.94 16 5 C -0.10 -1.37 10.02 22.37 0.22 -1.14 16 6 C -0.10 -1.44 10.03 22.22 0.22 -1.22 16 7 C -0.07 -1.52 9.61 22.54 0.22 -1.31 16 8 C -0.12 -3.18 5.87 -20.10 -0.12 -3.30 16 9 C 0.50 16.19 7.83 70.33 0.55 16.74 16 10 O -0.51 -17.33 13.14 19.93 0.26 -17.06 16 11 O -0.34 -12.33 9.02 -49.86 -0.45 -12.78 16 12 C 0.07 2.69 5.95 71.24 0.42 3.12 16 13 C 0.44 21.05 7.86 87.66 0.69 21.74 16 14 O -0.62 -34.34 16.08 15.74 0.25 -34.08 16 15 N -0.56 -28.28 5.29 -306.99 -1.62 -29.90 16 16 C -0.34 -18.87 9.68 84.04 0.81 -18.05 16 17 H 0.09 5.02 7.16 -2.91 -0.02 4.99 16 18 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 19 N -0.92 -48.35 13.05 21.66 0.28 -48.07 16 20 Si 1.00 41.60 29.55 68.60 2.03 43.63 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.08 2.21 5.86 -2.39 -0.01 2.20 16 26 H 0.08 1.54 7.46 -2.39 -0.02 1.52 16 27 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 28 H 0.18 1.37 8.06 -2.91 -0.02 1.34 16 29 H 0.14 3.40 7.63 -2.91 -0.02 3.38 16 30 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 31 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 32 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 33 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -67.44 302.77 6.08 -61.37 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.44 Total: 24.50 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 4.15 Total: 14.34 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -1.34 Total: -77.97 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: 0.06 Total: -63.92 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.74 Total: -1.94 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -67.44 6.08 -61.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817244633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.909 kcal (2) G-P(sol) polarization free energy of solvation -67.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds