Wall clock time and date at job start Fri Apr 10 2020 14:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 O 1.42101 * 109.46676 * 2 1 4 4 C 1.81401 * 103.00009 * 243.61615 * 2 1 3 5 5 C 1.53000 * 109.47150 * 179.97438 * 4 2 1 6 6 N 1.46497 * 109.47087 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00234 * 179.97438 * 6 5 4 8 8 O 1.21618 * 119.99610 * 359.97438 * 7 6 5 9 9 C 1.47428 * 120.00477 * 180.02562 * 7 6 5 10 10 C 1.39232 * 120.28208 * 357.04743 * 9 7 6 11 11 C 1.38215 * 120.09251 * 180.27997 * 10 9 7 12 12 C 1.38828 * 120.67982 * 359.72196 * 11 10 9 13 13 C 1.37601 * 120.56733 * 359.97438 * 12 11 10 14 14 C 1.40710 * 119.87923 * 0.02562 * 13 12 11 15 15 C 1.40893 * 120.32484 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99693 * 145.84936 * 15 14 13 17 17 C 1.40270 * 120.00340 * 325.85599 * 15 14 13 18 18 N 1.30628 * 119.99792 * 340.93931 * 17 15 14 19 19 Si 1.86802 * 120.00322 * 160.94274 * 17 15 14 20 20 H 1.48497 * 109.46888 * 269.99951 * 19 17 15 21 21 H 1.48499 * 109.46819 * 29.99664 * 19 17 15 22 22 H 1.48498 * 109.47235 * 149.99593 * 19 17 15 23 23 H 1.08997 * 109.46722 * 176.38662 * 1 2 3 24 24 H 1.08993 * 109.46696 * 296.38344 * 1 2 3 25 25 H 1.08994 * 109.47031 * 56.38717 * 1 2 3 26 26 H 1.09000 * 109.47233 * 59.99299 * 4 2 1 27 27 H 1.09002 * 109.46866 * 300.00179 * 4 2 1 28 28 H 1.08997 * 109.47147 * 59.99751 * 5 4 2 29 29 H 1.09003 * 109.46728 * 299.99541 * 5 4 2 30 30 H 0.97004 * 120.00040 * 0.02562 * 6 5 4 31 31 H 1.08001 * 119.94888 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.66332 * 179.73917 * 11 10 9 33 33 H 1.07994 * 119.72068 * 180.02562 * 12 11 10 34 34 H 1.07999 * 120.05974 * 180.02562 * 13 12 11 35 35 H 0.96993 * 120.00143 * 354.75992 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2222 -0.7855 -1.5834 5 6 3.7424 -0.8615 -1.7382 6 7 4.0719 -1.4964 -3.0166 7 6 5.3608 -1.6707 -3.3701 8 8 6.2502 -1.3005 -2.6279 9 6 5.6925 -2.3091 -4.6569 10 6 4.6805 -2.7895 -5.4838 11 6 4.9962 -3.3925 -6.6867 12 6 6.3187 -3.5221 -7.0886 13 6 7.3403 -3.0516 -6.2958 14 6 7.0458 -2.4336 -5.0664 15 6 8.0845 -1.9489 -4.2471 16 1 7.9336 -1.0593 -3.6536 17 6 9.3145 -2.6217 -4.2022 18 7 9.3947 -3.8633 -4.6001 19 14 10.8379 -1.7422 -3.5735 20 1 11.5268 -1.0741 -4.7067 21 1 10.4420 -0.7254 -2.5661 22 1 11.7556 -2.7277 -2.9478 23 1 -0.3633 -1.0256 -0.0648 24 1 -0.3632 0.4567 0.9206 25 1 -0.3633 0.5689 -0.8558 26 1 1.8031 -0.1969 -2.3996 27 1 1.8032 -1.7914 -1.6086 28 1 4.1617 -1.4498 -0.9220 29 1 4.1609 0.1447 -1.7132 30 1 3.3625 -1.7907 -3.6091 31 1 3.6476 -2.6945 -5.1828 32 1 4.2059 -3.7665 -7.3208 33 1 6.5477 -3.9956 -8.0318 34 1 8.3662 -3.1564 -6.6166 35 1 8.5915 -4.3439 -4.8546 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865201125.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:44 Heat of formation + Delta-G solvation = -60.474454 kcal Electronic energy + Delta-G solvation = -19150.295882 eV Core-core repulsion = 16046.518896 eV Total energy + Delta-G solvation = -3103.776986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.04104 -37.07377 -35.87994 -34.73687 -33.87515 -30.95864 -29.67563 -29.29781 -28.94049 -25.30081 -23.47360 -21.96170 -20.87273 -19.61673 -18.11136 -17.62197 -16.47195 -15.89397 -15.60210 -14.90482 -14.72582 -14.62245 -14.24292 -14.03016 -13.90240 -13.60879 -13.25619 -12.95527 -12.61673 -12.26384 -12.21700 -11.91229 -11.87357 -11.38739 -11.13301 -10.90793 -10.76009 -10.47914 -10.35865 -10.17380 -9.61967 -9.08548 -8.60688 -8.46545 -8.38488 -7.80867 -7.62130 -7.15048 -4.47325 1.24485 2.22332 2.38022 2.72155 3.21083 3.31598 3.43344 3.54633 4.03280 4.03883 4.06166 4.63087 4.69948 4.79502 4.85033 4.95790 5.43483 5.44826 5.60103 5.79420 5.84942 5.89060 6.07154 6.16925 6.48605 6.69990 6.97113 7.04886 7.26369 7.47451 7.59777 7.70482 7.87879 8.08033 8.20502 8.34582 8.72101 8.85535 9.33386 10.03763 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019633 B = 0.004292 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.840642 B = 6522.482654 C = 7768.101636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.493 4.493 2 S 1.259 4.741 3 O -0.847 6.847 4 C -0.464 4.464 5 C 0.146 3.854 6 N -0.747 5.747 7 C 0.562 3.438 8 O -0.535 6.535 9 C -0.266 4.266 10 C -0.043 4.043 11 C -0.260 4.260 12 C -0.076 4.076 13 C -0.201 4.201 14 C 0.121 3.879 15 C -0.466 4.466 16 H 0.106 0.894 17 C 0.031 3.969 18 N -0.793 5.793 19 Si 1.073 2.927 20 H -0.275 1.275 21 H -0.272 1.272 22 H -0.276 1.276 23 H 0.112 0.888 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.122 0.878 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.392 0.608 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.816 0.280 7.036 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 1.455 4.545 3 O -0.842 6.842 4 C -0.600 4.600 5 C 0.021 3.979 6 N -0.403 5.403 7 C 0.356 3.644 8 O -0.413 6.413 9 C -0.271 4.271 10 C -0.062 4.062 11 C -0.280 4.280 12 C -0.095 4.095 13 C -0.220 4.220 14 C 0.116 3.884 15 C -0.493 4.493 16 H 0.124 0.876 17 C -0.190 4.190 18 N -0.417 5.417 19 Si 0.896 3.104 20 H -0.201 1.201 21 H -0.197 1.197 22 H -0.201 1.201 23 H 0.131 0.869 24 H 0.124 0.876 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.140 0.860 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.226 0.774 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.916 0.696 8.516 13.863 hybrid contribution -3.249 0.981 -2.544 4.242 sum -14.166 1.677 5.972 15.464 Atomic orbital electron populations 1.27679 1.22225 1.07983 1.07153 1.70694 0.86008 0.98912 0.98866 1.93152 1.73255 1.36736 1.81074 1.27984 1.02728 1.10634 1.18662 1.20604 0.90235 0.98924 0.88160 1.46038 1.08380 1.65084 1.20808 1.18411 0.80960 0.78326 0.86727 1.90689 1.46073 1.50662 1.53915 1.19383 0.94606 1.16837 0.96286 1.20705 0.95976 0.95566 0.93996 1.20235 0.95451 1.12740 0.99526 1.20742 0.93247 0.97748 0.97721 1.21265 0.97933 1.07196 0.95571 1.17506 0.91121 0.88579 0.91184 1.21245 0.96106 1.11250 1.20696 0.87587 1.27279 1.02863 0.95483 0.93399 1.70361 1.35828 1.09251 1.26244 0.83522 0.73512 0.75910 0.77464 1.20071 1.19678 1.20099 0.86916 0.87650 0.90237 0.89184 0.85960 0.90938 0.91780 0.77386 0.89192 0.88922 0.88862 0.87489 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -2.96 10.74 101.05 1.09 -1.88 16 2 S 1.26 10.13 13.80 -107.50 -1.48 8.64 16 3 O -0.85 -13.24 18.14 -35.23 -0.64 -13.88 16 4 C -0.46 -4.42 6.04 37.16 0.22 -4.19 16 5 C 0.15 2.16 5.68 -4.04 -0.02 2.14 16 6 N -0.75 -13.18 5.51 -61.38 -0.34 -13.52 16 7 C 0.56 13.14 7.73 -12.52 -0.10 13.04 16 8 O -0.54 -14.33 13.55 5.26 0.07 -14.25 16 9 C -0.27 -6.50 5.92 -104.37 -0.62 -7.12 16 10 C -0.04 -0.91 9.53 -39.22 -0.37 -1.29 16 11 C -0.26 -5.43 10.03 -39.37 -0.39 -5.82 16 12 C -0.08 -1.67 10.01 -39.60 -0.40 -2.07 16 13 C -0.20 -5.01 7.86 -38.88 -0.31 -5.31 16 14 C 0.12 3.22 5.18 -106.54 -0.55 2.67 16 15 C -0.47 -12.91 7.66 -37.81 -0.29 -13.20 16 16 H 0.11 3.09 5.91 -52.48 -0.31 2.78 16 17 C 0.03 0.82 5.04 -17.30 -0.09 0.73 16 18 N -0.79 -21.23 12.57 55.56 0.70 -20.53 16 19 Si 1.07 22.72 29.98 -169.99 -5.10 17.62 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 27 H 0.12 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.39 5.84 6.51 -40.82 -0.27 5.58 16 31 H 0.09 1.54 6.41 -52.49 -0.34 1.20 16 32 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 34 H 0.11 2.72 6.93 -52.49 -0.36 2.36 16 35 H 0.30 8.15 6.54 -40.82 -0.27 7.88 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -36.34 311.69 -8.06 -44.40 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.14 Total: 9.12 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -1.83 Total: -22.30 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.36 Total: -34.05 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.57 Total: -28.14 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.10 Total: 17.62 kcal Atomic # 16 Polarization: 10.13 SS G_CDS: -1.48 Total: 8.64 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.34 -8.06 -44.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865201125.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.072 kcal (2) G-P(sol) polarization free energy of solvation -36.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds