Wall clock time and date at job start Fri Apr 10 2020 14:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 O 1.42101 * 109.46676 * 2 1 4 4 C 1.81401 * 103.00009 * 243.61615 * 2 1 3 5 5 C 1.53000 * 109.47150 * 179.97438 * 4 2 1 6 6 N 1.46497 * 109.47087 * 179.97438 * 5 4 2 7 7 C 1.34774 * 120.00234 * 179.97438 * 6 5 4 8 8 O 1.21618 * 119.99610 * 359.97438 * 7 6 5 9 9 C 1.47428 * 120.00477 * 180.02562 * 7 6 5 10 10 C 1.39232 * 120.28208 * 357.04743 * 9 7 6 11 11 C 1.38215 * 120.09251 * 180.27997 * 10 9 7 12 12 C 1.38828 * 120.67982 * 359.72196 * 11 10 9 13 13 C 1.37601 * 120.56733 * 359.97438 * 12 11 10 14 14 C 1.40710 * 119.87923 * 0.02562 * 13 12 11 15 15 C 1.40893 * 120.32484 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99693 * 145.84936 * 15 14 13 17 17 C 1.40270 * 120.00340 * 325.85599 * 15 14 13 18 18 N 1.30628 * 119.99792 * 340.93931 * 17 15 14 19 19 Si 1.86802 * 120.00322 * 160.94274 * 17 15 14 20 20 H 1.48497 * 109.46888 * 269.99951 * 19 17 15 21 21 H 1.48499 * 109.46819 * 29.99664 * 19 17 15 22 22 H 1.48498 * 109.47235 * 149.99593 * 19 17 15 23 23 H 1.08997 * 109.46722 * 176.38662 * 1 2 3 24 24 H 1.08993 * 109.46696 * 296.38344 * 1 2 3 25 25 H 1.08994 * 109.47031 * 56.38717 * 1 2 3 26 26 H 1.09000 * 109.47233 * 59.99299 * 4 2 1 27 27 H 1.09002 * 109.46866 * 300.00179 * 4 2 1 28 28 H 1.08997 * 109.47147 * 59.99751 * 5 4 2 29 29 H 1.09003 * 109.46728 * 299.99541 * 5 4 2 30 30 H 0.97004 * 120.00040 * 0.02562 * 6 5 4 31 31 H 1.08001 * 119.94888 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.66332 * 179.73917 * 11 10 9 33 33 H 1.07994 * 119.72068 * 180.02562 * 12 11 10 34 34 H 1.07999 * 120.05974 * 180.02562 * 13 12 11 35 35 H 0.96993 * 120.00143 * 354.75992 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2222 -0.7855 -1.5834 5 6 3.7424 -0.8615 -1.7382 6 7 4.0719 -1.4964 -3.0166 7 6 5.3608 -1.6707 -3.3701 8 8 6.2502 -1.3005 -2.6279 9 6 5.6925 -2.3091 -4.6569 10 6 4.6805 -2.7895 -5.4838 11 6 4.9962 -3.3925 -6.6867 12 6 6.3187 -3.5221 -7.0886 13 6 7.3403 -3.0516 -6.2958 14 6 7.0458 -2.4336 -5.0664 15 6 8.0845 -1.9489 -4.2471 16 1 7.9336 -1.0593 -3.6536 17 6 9.3145 -2.6217 -4.2022 18 7 9.3947 -3.8633 -4.6001 19 14 10.8379 -1.7422 -3.5735 20 1 11.5268 -1.0741 -4.7067 21 1 10.4420 -0.7254 -2.5661 22 1 11.7556 -2.7277 -2.9478 23 1 -0.3633 -1.0256 -0.0648 24 1 -0.3632 0.4567 0.9206 25 1 -0.3633 0.5689 -0.8558 26 1 1.8031 -0.1969 -2.3996 27 1 1.8032 -1.7914 -1.6086 28 1 4.1617 -1.4498 -0.9220 29 1 4.1609 0.1447 -1.7132 30 1 3.3625 -1.7907 -3.6091 31 1 3.6476 -2.6945 -5.1828 32 1 4.2059 -3.7665 -7.3208 33 1 6.5477 -3.9956 -8.0318 34 1 8.3662 -3.1564 -6.6166 35 1 8.5915 -4.3439 -4.8546 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865201125.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:44 Heat of formation + Delta-G solvation = -88.368274 kcal Electronic energy + Delta-G solvation = -19151.505449 eV Core-core repulsion = 16046.518896 eV Total energy + Delta-G solvation = -3104.986553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82180 -38.85490 -36.87249 -36.33719 -35.67508 -32.51020 -31.43092 -30.66827 -29.70040 -27.16394 -24.91317 -23.52717 -22.66332 -21.32853 -19.97305 -18.50503 -18.06000 -17.20476 -16.70333 -16.54520 -16.05561 -15.90474 -15.72825 -15.50921 -15.29520 -15.13246 -14.51948 -14.32130 -13.98271 -13.72372 -13.53509 -13.06735 -13.01529 -12.88846 -12.70474 -12.50445 -12.43619 -12.06363 -11.95036 -11.53573 -11.31220 -10.96493 -10.37281 -10.05540 -9.62193 -9.50543 -9.23556 -9.10589 -6.47647 0.38577 0.53653 0.89774 1.45887 1.61486 1.74013 1.77006 2.23022 2.30249 2.48636 2.73432 2.88542 3.54849 3.71489 3.96803 4.21458 4.27118 4.31598 4.43030 4.49087 4.53940 4.73229 4.77064 4.86874 4.98343 5.12929 5.17245 5.42106 5.53481 5.64821 5.70303 5.88613 5.95819 6.19547 6.32955 6.67638 6.84335 6.91378 7.58171 8.04076 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019633 B = 0.004292 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.840642 B = 6522.482654 C = 7768.101636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.482 4.482 2 S 1.303 4.697 3 O -0.929 6.929 4 C -0.454 4.454 5 C 0.137 3.863 6 N -0.725 5.725 7 C 0.553 3.447 8 O -0.580 6.580 9 C -0.285 4.285 10 C -0.041 4.041 11 C -0.244 4.244 12 C -0.072 4.072 13 C -0.226 4.226 14 C 0.096 3.904 15 C -0.513 4.513 16 H 0.078 0.922 17 C -0.001 4.001 18 N -0.816 5.816 19 Si 1.117 2.883 20 H -0.256 1.256 21 H -0.277 1.277 22 H -0.264 1.264 23 H 0.152 0.848 24 H 0.114 0.886 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.167 0.833 28 H 0.082 0.918 29 H 0.028 0.972 30 H 0.409 0.591 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.368 -1.052 6.414 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 1.503 4.497 3 O -0.925 6.925 4 C -0.590 4.590 5 C 0.012 3.988 6 N -0.380 5.380 7 C 0.346 3.654 8 O -0.462 6.462 9 C -0.290 4.290 10 C -0.059 4.059 11 C -0.263 4.263 12 C -0.090 4.090 13 C -0.246 4.246 14 C 0.092 3.908 15 C -0.541 4.541 16 H 0.096 0.904 17 C -0.216 4.216 18 N -0.440 5.440 19 Si 0.934 3.066 20 H -0.181 1.181 21 H -0.202 1.202 22 H -0.188 1.188 23 H 0.170 0.830 24 H 0.133 0.867 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.185 0.815 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.246 0.754 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.107 0.893 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.513 -0.642 7.868 16.521 hybrid contribution -2.554 1.342 -2.426 3.769 sum -17.066 0.700 5.442 17.927 Atomic orbital electron populations 1.27584 1.18795 1.10548 1.07243 1.69851 0.87171 0.95884 0.96831 1.93029 1.76589 1.40496 1.82397 1.27945 0.98497 1.13409 1.19172 1.20781 0.94173 0.96842 0.86966 1.45793 1.06767 1.63574 1.21905 1.18523 0.82398 0.78084 0.86360 1.90671 1.47982 1.52491 1.55029 1.19812 0.94844 1.16906 0.97483 1.21164 0.97446 0.93943 0.93381 1.20826 0.95878 1.10159 0.99390 1.21172 0.93306 0.96265 0.98266 1.21219 0.98205 1.09197 0.95956 1.17902 0.92318 0.88911 0.91677 1.21140 0.98181 1.11966 1.22827 0.90435 1.28425 1.05042 0.95406 0.92758 1.70464 1.34768 1.09584 1.29164 0.82995 0.70922 0.75140 0.77503 1.18084 1.20242 1.18825 0.82996 0.86710 0.91224 0.89431 0.81476 0.90016 0.95302 0.75386 0.84451 0.84395 0.85694 0.89253 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -3.92 10.74 113.37 1.22 -2.70 16 2 S 1.30 18.64 13.80 -56.49 -0.78 17.86 16 3 O -0.93 -29.53 18.14 -148.98 -2.70 -32.23 16 4 C -0.45 -7.31 6.04 71.98 0.43 -6.87 16 5 C 0.14 3.95 5.68 86.38 0.49 4.45 16 6 N -0.72 -24.53 5.51 -466.37 -2.57 -27.10 16 7 C 0.55 26.25 7.73 86.66 0.67 26.92 16 8 O -0.58 -32.73 13.55 -4.09 -0.06 -32.79 16 9 C -0.29 -13.92 5.92 -19.70 -0.12 -14.03 16 10 C -0.04 -1.57 9.53 22.50 0.21 -1.36 16 11 C -0.24 -9.07 10.03 22.41 0.22 -8.84 16 12 C -0.07 -3.00 10.01 22.26 0.22 -2.77 16 13 C -0.23 -11.52 7.86 22.72 0.18 -11.34 16 14 C 0.10 5.31 5.18 -21.11 -0.11 5.20 16 15 C -0.51 -30.29 7.66 23.41 0.18 -30.11 16 16 H 0.08 4.90 5.91 -2.91 -0.02 4.89 16 17 C 0.00 -0.04 5.04 85.37 0.43 0.39 16 18 N -0.82 -45.79 12.57 21.88 0.27 -45.52 16 19 Si 1.12 48.10 29.98 68.60 2.06 50.16 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 23 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 24 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.17 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 29 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.41 10.71 6.51 -92.71 -0.60 10.11 16 31 H 0.14 3.92 6.41 -2.91 -0.02 3.90 16 32 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 33 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 34 H 0.09 4.77 6.93 -2.91 -0.02 4.74 16 35 H 0.28 16.34 6.54 -92.71 -0.61 15.73 16 Total: -1.00 -87.01 311.69 0.94 -86.07 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.67 Total: 24.63 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 4.04 Total: -41.09 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -2.29 Total: -72.62 kcal Atomic # 8 Polarization: -62.26 SS G_CDS: -2.76 Total: -65.02 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.06 Total: 50.16 kcal Atomic # 16 Polarization: 18.64 SS G_CDS: -0.78 Total: 17.86 kcal Total: -87.01 0.94 -86.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865201125.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.294 kcal (2) G-P(sol) polarization free energy of solvation -87.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds