Wall clock time and date at job start Fri Apr 10 2020 14:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38273 * 119.93426 * 2 1 4 4 C 1.38110 * 120.07418 * 179.72214 * 3 2 1 5 5 C 1.38867 * 119.92862 * 0.25681 * 4 3 2 6 6 N 1.39928 * 120.07010 * 180.02562 * 5 4 3 7 7 C 1.46500 * 119.99881 * 172.04575 * 6 5 4 8 8 C 1.50705 * 109.47258 * 80.90282 * 7 6 5 9 9 H 1.08003 * 119.99800 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00234 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99822 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 119.99965 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.46851 * 89.99728 * 12 10 8 14 14 H 1.48492 * 109.47225 * 209.99741 * 12 10 8 15 15 H 1.48498 * 109.47035 * 330.00109 * 12 10 8 16 16 C 1.34772 * 120.00014 * 352.04407 * 6 5 4 17 17 O 1.21290 * 120.00291 * 359.83216 * 16 6 5 18 18 C 1.50699 * 119.99985 * 179.82565 * 16 6 5 19 19 H 1.08997 * 109.47529 * 175.01714 * 18 16 6 20 20 C 1.53005 * 109.47279 * 295.01669 * 18 16 6 21 21 Cl 1.80301 * 109.47081 * 55.01631 * 18 16 6 22 22 C 1.38874 * 119.86102 * 359.97438 * 5 4 3 23 23 C 1.38118 * 119.92519 * 0.02562 * 22 5 4 24 24 H 1.09007 * 109.47598 * 90.00132 * 1 2 3 25 25 H 1.09006 * 109.47562 * 209.99875 * 1 2 3 26 26 H 1.09003 * 109.47276 * 329.99958 * 1 2 3 27 27 H 1.08005 * 119.96423 * 359.97438 * 3 2 1 28 28 H 1.08007 * 120.03446 * 180.27419 * 4 3 2 29 29 H 1.08997 * 109.47170 * 200.90417 * 7 6 5 30 30 H 1.09007 * 109.47318 * 320.90531 * 7 6 5 31 31 H 0.96998 * 119.99691 * 180.02562 * 11 10 8 32 32 H 1.09007 * 109.47087 * 94.77102 * 20 18 16 33 33 H 1.08993 * 109.47193 * 214.76814 * 20 18 16 34 34 H 1.08996 * 109.46994 * 334.77647 * 20 18 16 35 35 H 1.07997 * 120.03898 * 179.97438 * 22 5 4 36 36 H 1.08004 * 119.95967 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1983 0.0000 4 6 3.5780 1.2017 0.0058 5 6 4.2738 -0.0001 0.0062 6 7 5.6730 -0.0002 0.0126 7 6 6.4047 -1.2571 0.1887 8 6 6.4673 -1.9904 -1.1264 9 1 6.0084 -1.5626 -2.0056 10 6 7.1114 -3.2068 -1.2076 11 7 7.1664 -3.8464 -2.3554 12 14 7.9057 -3.9463 0.3128 13 1 6.9176 -4.7973 1.0232 14 1 9.0717 -4.7728 -0.0902 15 1 8.3591 -2.8566 1.2140 16 6 6.3477 1.1561 -0.1432 17 8 5.7420 2.1964 -0.2920 18 6 7.8546 1.1566 -0.1323 19 1 8.2193 2.1584 -0.3590 20 6 8.3549 0.7325 1.2500 21 17 8.4649 -0.0003 -1.3733 22 6 3.5779 -1.2020 0.0014 23 6 2.1968 -1.1985 -0.0044 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6552 2.1327 -0.0004 28 1 4.1163 2.1380 0.0103 29 1 7.4162 -1.0434 0.5341 30 1 5.8922 -1.8757 0.9255 31 1 7.6192 -4.7023 -2.4124 32 1 8.5569 -0.3387 1.2504 33 1 9.2700 1.2749 1.4874 34 1 7.5940 0.9589 1.9969 35 1 4.1162 -2.1383 0.0013 36 1 1.6551 -2.1328 -0.0078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038338682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:10 Heat of formation + Delta-G solvation = 3.253486 kcal Electronic energy + Delta-G solvation = -20377.137204 eV Core-core repulsion = 17274.079962 eV Total energy + Delta-G solvation = -3103.057241 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44240 -38.18222 -35.89671 -35.32633 -32.83487 -32.47792 -30.90976 -30.38117 -28.22595 -26.24042 -24.17658 -22.98854 -21.76359 -20.97447 -19.19367 -17.12698 -17.01040 -16.38536 -15.36766 -15.07835 -14.74776 -14.40112 -14.17201 -13.46368 -13.42586 -13.24258 -12.93634 -12.77775 -12.50377 -12.21601 -12.00901 -11.89786 -11.83449 -11.54198 -11.22237 -11.00995 -10.80276 -10.55279 -10.42756 -10.11344 -9.73435 -9.46704 -9.14283 -8.75951 -8.67748 -8.35922 -7.17307 -6.18511 -4.15062 1.70238 1.99009 2.39369 3.15147 3.20045 3.20652 3.24951 3.45028 4.26411 4.40173 4.56493 4.95125 5.09460 5.15450 5.29837 5.34805 5.56569 5.58463 5.68065 5.74265 5.81010 5.93304 6.01006 6.08693 6.11886 6.26436 6.45320 6.58325 6.65090 6.90832 6.92525 7.10064 7.20855 7.38200 7.71679 7.86654 8.35267 8.47301 8.88456 9.38445 10.94203 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016162 B = 0.007721 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.033247 B = 3625.706054 C = 4773.136658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.171 4.171 5 C 0.160 3.840 6 N -0.515 5.515 7 C 0.182 3.818 8 C -0.514 4.514 9 H 0.082 0.918 10 C 0.082 3.918 11 N -0.888 5.888 12 Si 0.858 3.142 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.518 3.482 17 O -0.534 6.534 18 C -0.043 4.043 19 H 0.123 0.877 20 C -0.162 4.162 21 Cl -0.101 7.101 22 C -0.131 4.131 23 C -0.105 4.105 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.114 0.886 28 H 0.174 0.826 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.265 0.735 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.142 0.858 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.114 7.065 7.597 10.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.127 4.127 3 C -0.128 4.128 4 C -0.191 4.191 5 C 0.065 3.935 6 N -0.233 5.233 7 C 0.063 3.937 8 C -0.553 4.553 9 H 0.100 0.900 10 C -0.121 4.121 11 N -0.526 5.526 12 Si 0.685 3.315 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.188 1.188 16 C 0.307 3.693 17 O -0.414 6.414 18 C -0.091 4.091 19 H 0.141 0.859 20 C -0.219 4.219 21 Cl -0.074 7.074 22 C -0.151 4.151 23 C -0.124 4.124 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.132 0.868 28 H 0.190 0.810 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.160 0.840 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.199 7.307 7.340 10.839 hybrid contribution 0.570 -0.823 0.517 1.127 sum -2.629 6.484 7.857 10.520 Atomic orbital electron populations 1.20673 0.92022 1.01854 1.01597 1.19804 0.95493 0.93511 1.03938 1.20863 0.93884 0.96843 1.01185 1.22546 0.94376 0.99857 1.02290 1.17999 0.82244 0.94358 0.98884 1.45577 1.04273 1.09288 1.64192 1.20597 0.93066 0.80720 0.99361 1.21073 1.36193 1.03781 0.94222 0.90013 1.24696 0.95532 0.96455 0.95422 1.69869 1.42965 1.15460 1.24293 0.87126 0.80027 0.80191 0.84143 1.19983 1.20812 1.18832 1.20413 0.89386 0.83166 0.76292 1.90349 1.68074 1.32636 1.50373 1.24199 0.92473 0.98362 0.94020 0.85910 1.22345 1.02074 1.04180 0.93296 1.98861 1.88931 1.61642 1.58013 1.21158 0.94022 0.97863 1.02064 1.20762 0.93503 0.97122 1.00969 0.91930 0.92169 0.92280 0.86754 0.80969 0.92134 0.95044 0.92466 0.89149 0.90696 0.91123 0.84038 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.01 36.00 0.36 -0.89 16 2 C -0.13 -2.00 5.88 -104.60 -0.62 -2.61 16 3 C -0.11 -1.81 9.69 -39.62 -0.38 -2.19 16 4 C -0.17 -3.28 9.01 -39.40 -0.36 -3.63 16 5 C 0.16 3.28 6.44 -83.69 -0.54 2.74 16 6 N -0.52 -10.64 2.70 -114.73 -0.31 -10.95 16 7 C 0.18 3.90 2.90 -5.19 -0.02 3.88 16 8 C -0.51 -12.95 6.42 -34.44 -0.22 -13.17 16 9 H 0.08 2.39 8.06 -52.48 -0.42 1.96 16 10 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 11 N -0.89 -25.26 13.96 55.43 0.77 -24.49 16 12 Si 0.86 19.27 27.47 -169.99 -4.67 14.60 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 16 C 0.52 10.12 6.38 -10.99 -0.07 10.05 16 17 O -0.53 -11.00 13.52 5.55 0.08 -10.93 16 18 C -0.04 -0.71 3.50 -27.88 -0.10 -0.81 16 19 H 0.12 1.73 8.12 -51.93 -0.42 1.31 16 20 C -0.16 -2.23 8.80 37.16 0.33 -1.90 16 21 Cl -0.10 -1.98 23.94 -51.86 -1.24 -3.22 16 22 C -0.13 -2.58 8.95 -39.39 -0.35 -2.93 16 23 C -0.10 -1.79 9.69 -39.61 -0.38 -2.17 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 28 H 0.17 3.42 4.62 -55.80 -0.26 3.17 16 29 H 0.06 1.23 2.00 -51.93 -0.10 1.13 16 30 H 0.03 0.67 6.55 -51.93 -0.34 0.33 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.09 1.37 5.80 -51.93 -0.30 1.07 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.93 7.76 -51.93 -0.40 0.53 16 35 H 0.14 2.95 6.05 -52.49 -0.32 2.63 16 36 H 0.12 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 301.32 15.07 4.54 4.54 Total: -1.00 -28.80 301.32 -7.54 -36.34 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.27 Total: 5.70 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -2.44 Total: -11.60 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.46 Total: -35.44 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.67 Total: 14.60 kcal Atomic # 17 Polarization: -1.98 SS G_CDS: -1.24 Total: -3.22 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.80 -7.54 -36.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038338682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.596 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds