Wall clock time and date at job start Fri Apr 10 2020 14:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38434 * 119.83750 * 2 1 4 4 C 1.37883 * 120.18991 * 179.97438 * 3 2 1 5 5 C 1.39693 * 119.85949 * 359.97438 * 4 3 2 6 6 C 1.47648 * 120.15749 * 179.97438 * 5 4 3 7 7 O 1.21604 * 120.00020 * 138.16176 * 6 5 4 8 8 N 1.34773 * 120.00337 * 318.15646 * 6 5 4 9 9 C 1.36881 * 119.99671 * 4.43987 * 8 6 5 10 10 H 1.08002 * 120.00215 * 326.75833 * 9 8 6 11 11 C 1.39043 * 119.99465 * 146.76556 * 9 8 6 12 12 N 1.31367 * 120.00130 * 161.62095 * 11 9 8 13 13 Si 1.86802 * 120.00170 * 341.61309 * 11 9 8 14 14 H 1.48495 * 109.47204 * 86.61121 * 13 11 9 15 15 H 1.48507 * 109.46939 * 206.61269 * 13 11 9 16 16 H 1.48503 * 109.47066 * 326.61006 * 13 11 9 17 17 C 1.46501 * 120.00040 * 184.44662 * 8 6 5 18 18 C 1.53002 * 109.47065 * 353.83244 * 17 8 6 19 19 C 1.52998 * 109.47355 * 113.83987 * 17 8 6 20 20 C 1.39762 * 119.67422 * 359.97438 * 5 4 3 21 21 Cl 1.73602 * 120.09386 * 179.97438 * 20 5 4 22 22 C 1.38132 * 119.81156 * 0.26188 * 20 5 4 23 23 H 1.09000 * 109.47537 * 89.99783 * 1 2 3 24 24 H 1.09005 * 109.47088 * 209.99604 * 1 2 3 25 25 H 1.09000 * 109.46945 * 329.99532 * 1 2 3 26 26 H 1.08003 * 119.90432 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.06685 * 179.97438 * 4 3 2 28 28 H 0.96994 * 120.00520 * 179.97438 * 12 11 9 29 29 H 1.09001 * 109.46823 * 233.83747 * 17 8 6 30 30 H 1.08995 * 109.46889 * 66.58883 * 18 17 8 31 31 H 1.09004 * 109.46904 * 186.58334 * 18 17 8 32 32 H 1.08998 * 109.47073 * 306.58917 * 18 17 8 33 33 H 1.08994 * 109.47510 * 65.04259 * 19 17 8 34 34 H 1.09007 * 109.46851 * 185.04575 * 19 17 8 35 35 H 1.09002 * 109.46707 * 305.03709 * 19 17 8 36 36 H 1.08006 * 119.92989 * 179.74550 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2008 0.0000 4 6 3.5745 1.2093 0.0005 5 6 4.2775 0.0021 0.0016 6 6 5.7540 0.0035 0.0016 7 8 6.3627 -0.7799 0.7048 8 7 6.4271 0.8729 -0.7777 9 6 5.7449 1.8147 -1.4998 10 1 4.7655 1.5876 -1.8944 11 6 6.3129 3.0635 -1.7255 12 7 5.8554 3.8286 -2.6904 13 14 7.7266 3.6536 -0.6564 14 1 9.0106 3.1637 -1.2190 15 1 7.7354 5.1382 -0.6226 16 1 7.5576 3.1280 0.7221 17 6 7.8888 0.8100 -0.8522 18 6 8.4071 -0.2171 0.1565 19 6 8.3103 0.3965 -2.2636 20 6 3.5763 -1.2069 0.0027 21 17 4.4388 -2.7134 0.0034 22 6 2.1950 -1.1996 -0.0028 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6515 2.1337 -0.0004 27 1 4.1099 2.1473 0.0001 28 1 6.2514 4.7000 -2.8476 29 1 8.3069 1.7897 -0.6206 30 1 8.0845 -1.2144 -0.1422 31 1 9.4962 -0.1808 0.1849 32 1 8.0099 0.0124 1.1453 33 1 8.0194 1.1723 -2.9717 34 1 9.3917 0.2625 -2.2953 35 1 7.8204 -0.5403 -2.5292 36 1 1.6512 -2.1327 -0.0061 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225429808.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:13 Heat of formation + Delta-G solvation = -0.091900 kcal Electronic energy + Delta-G solvation = -20557.651100 eV Core-core repulsion = 17454.448791 eV Total energy + Delta-G solvation = -3103.202308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49373 -39.76583 -37.43479 -37.04732 -34.77050 -33.87216 -32.48225 -31.63689 -28.30462 -28.16814 -26.56778 -24.05442 -23.44155 -22.57226 -20.93910 -19.55464 -17.91403 -17.38649 -16.82809 -16.49443 -16.35191 -15.73592 -15.40934 -14.98488 -14.72917 -14.63516 -14.39155 -14.21249 -13.73260 -13.53224 -13.26843 -13.14082 -13.06587 -12.94886 -12.74944 -12.64057 -12.30976 -12.18022 -12.14144 -11.87589 -11.72358 -11.58986 -10.85366 -9.83771 -9.79542 -9.56873 -9.48788 -8.49497 -6.05959 -0.00528 0.34242 1.16946 1.22302 1.29894 1.37430 1.92427 2.15610 2.48987 2.72055 3.08233 3.84838 3.88597 3.97747 4.07567 4.18735 4.27490 4.34025 4.39104 4.58462 4.74204 4.78802 4.86384 4.92165 4.93204 5.01037 5.03648 5.22741 5.28083 5.30796 5.42724 5.45626 5.54667 5.58500 5.92573 6.04952 6.27395 6.94423 7.41853 7.76018 8.63214 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.008006 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.703893 B = 3496.477742 C = 4640.432813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.057 4.057 3 C -0.133 4.133 4 C -0.061 4.061 5 C -0.133 4.133 6 C 0.510 3.490 7 O -0.581 6.581 8 N -0.462 5.462 9 C -0.332 4.332 10 H 0.091 0.909 11 C 0.038 3.962 12 N -0.891 5.891 13 Si 0.922 3.078 14 H -0.255 1.255 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.107 3.893 18 C -0.117 4.117 19 C -0.142 4.142 20 C -0.010 4.010 21 Cl -0.066 7.066 22 C -0.129 4.129 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.151 0.849 27 H 0.132 0.868 28 H 0.280 0.720 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.890 -5.476 3.696 9.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.058 4.058 3 C -0.151 4.151 4 C -0.080 4.080 5 C -0.136 4.136 6 C 0.301 3.699 7 O -0.466 6.466 8 N -0.183 5.183 9 C -0.460 4.460 10 H 0.109 0.891 11 C -0.167 4.167 12 N -0.528 5.528 13 Si 0.751 3.249 14 H -0.181 1.181 15 H -0.215 1.215 16 H -0.203 1.203 17 C 0.005 3.995 18 C -0.174 4.174 19 C -0.200 4.200 20 C -0.037 4.037 21 Cl -0.037 7.037 22 C -0.147 4.147 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.169 0.831 27 H 0.150 0.850 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.458 -5.803 3.902 9.519 hybrid contribution 1.020 0.608 0.096 1.191 sum -5.439 -5.195 3.998 8.518 Atomic orbital electron populations 1.20888 0.87371 1.04494 1.03752 1.20387 0.98326 0.91337 0.95728 1.21385 0.93000 0.99418 1.01313 1.21672 0.95042 0.97195 0.94082 1.19903 0.93954 0.93546 1.06236 1.18418 0.87460 0.83226 0.80845 1.90719 1.68378 1.43704 1.43807 1.43784 1.05001 1.29923 1.39559 1.19008 1.03969 0.92307 1.30673 0.89128 1.25589 0.99252 0.95845 0.95994 1.69745 1.43464 1.11954 1.27653 0.86289 0.81323 0.76701 0.80619 1.18106 1.21542 1.20327 1.21599 0.81329 0.98780 0.97789 1.22071 0.98371 0.98470 0.98449 1.21947 1.01479 1.01145 0.95447 1.21125 0.93086 0.86011 1.03527 1.98341 1.77862 1.30799 1.96712 1.21073 0.90259 1.00174 1.03238 0.89661 0.89683 0.89785 0.83107 0.85014 0.91027 0.93430 0.91963 0.92672 0.92646 0.93272 0.89891 0.92946 0.82484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.00 71.24 0.71 -1.09 16 2 C -0.06 -1.51 5.89 -19.81 -0.12 -1.62 16 3 C -0.13 -4.10 9.68 22.23 0.22 -3.88 16 4 C -0.06 -2.41 7.66 22.54 0.17 -2.24 16 5 C -0.13 -5.68 5.26 -20.07 -0.11 -5.79 16 6 C 0.51 24.31 6.84 86.73 0.59 24.90 16 7 O -0.58 -28.25 10.65 -4.04 -0.04 -28.29 16 8 N -0.46 -22.39 2.40 -616.58 -1.48 -23.87 16 9 C -0.33 -16.98 6.73 84.10 0.57 -16.42 16 10 H 0.09 4.96 6.26 -2.91 -0.02 4.94 16 11 C 0.04 1.94 5.12 84.96 0.43 2.38 16 12 N -0.89 -47.72 13.95 21.68 0.30 -47.42 16 13 Si 0.92 41.75 24.73 68.60 1.70 43.45 16 14 H -0.25 -10.84 6.64 99.48 0.66 -10.18 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 C 0.11 4.74 2.53 44.99 0.11 4.86 16 18 C -0.12 -4.75 7.57 71.98 0.54 -4.21 16 19 C -0.14 -5.66 9.18 71.98 0.66 -5.00 16 20 C -0.01 -0.36 6.34 22.61 0.14 -0.22 16 21 Cl -0.07 -2.43 26.90 -2.72 -0.07 -2.50 16 22 C -0.13 -3.77 9.46 22.26 0.21 -3.56 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 1.13 8.08 -2.38 -0.02 1.11 16 25 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 26 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 27 H 0.13 5.76 6.31 -2.91 -0.02 5.74 16 28 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 29 H 0.05 2.17 2.14 -2.39 -0.01 2.17 16 30 H 0.06 2.63 6.88 -2.39 -0.02 2.62 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 2.46 6.49 -2.39 -0.02 2.44 16 33 H 0.05 2.11 7.69 -2.39 -0.02 2.09 16 34 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -59.90 300.68 5.60 -54.30 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.05 Total: 16.24 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 4.15 Total: -11.90 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -1.18 Total: -71.29 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.04 Total: -28.29 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.70 Total: 43.45 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.07 Total: -2.50 kcal Total: -59.90 5.60 -54.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225429808.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.205 kcal (2) G-P(sol) polarization free energy of solvation -59.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds