Wall clock time and date at job start Fri Apr 10 2020 14:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 14 14 C 1.34781 * 119.99981 * 84.78441 * 13 12 11 15 15 O 1.21564 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.47698 * 119.99676 * 179.97438 * 14 13 12 17 17 C 1.39489 * 122.09874 * 179.74380 * 16 14 13 18 18 C 1.35001 * 111.67757 * 179.78494 * 17 16 14 19 19 S 1.71756 * 105.45371 * 0.43038 * 18 17 16 20 20 N 1.30603 * 122.10217 * 0.03015 * 16 14 13 21 21 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 22 22 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 23 23 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 25 25 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 26 26 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 27 27 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 28 28 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 29 29 H 0.96997 * 120.00118 * 264.79365 * 13 12 11 30 30 H 1.07997 * 124.16044 * 359.97438 * 17 16 14 31 31 H 1.08000 * 127.27148 * 180.16437 * 18 17 16 32 32 H 1.09002 * 109.49848 * 178.74812 * 21 12 11 33 33 H 1.08999 * 109.49849 * 58.64620 * 21 12 11 34 34 H 1.09004 * 109.59094 * 246.19900 * 22 9 7 35 35 H 1.09001 * 109.59077 * 6.49172 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1713 -2.6584 -3.1399 14 6 7.2003 -2.0802 -3.7905 15 8 7.5960 -0.9828 -3.4486 16 6 7.8479 -2.7805 -4.9182 17 6 8.9121 -2.2209 -5.6254 18 6 9.3446 -3.0406 -6.6070 19 16 8.3348 -4.4275 -6.5230 20 7 7.4566 -3.9601 -5.3195 21 6 4.8755 -2.9898 -1.0921 22 6 4.2351 -2.2628 0.0946 23 1 -0.4850 0.8401 0.0004 24 1 2.9908 0.3501 -1.7559 25 1 4.5579 0.3822 -0.9097 26 1 3.7035 -1.5726 -3.0945 27 1 4.9277 -0.2876 -3.2372 28 1 6.2781 -1.3980 -1.4672 29 1 5.8557 -3.5342 -3.4126 30 1 9.3397 -1.2524 -5.4118 31 1 10.1518 -2.8604 -7.3014 32 1 5.6320 -3.6849 -0.7278 33 1 4.1091 -3.5392 -1.6388 34 1 5.0116 -1.7874 0.6940 35 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705404551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:37 Heat of formation + Delta-G solvation = 32.818509 kcal Electronic energy + Delta-G solvation = -19632.877816 eV Core-core repulsion = 16565.439068 eV Total energy + Delta-G solvation = -3067.438748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.58434 -38.79489 -37.40570 -34.64194 -32.36757 -31.70504 -30.41027 -30.11407 -26.87307 -24.79573 -22.85438 -22.44464 -21.25424 -20.26122 -19.58805 -18.56964 -17.76969 -16.78241 -16.05283 -15.56044 -15.13940 -14.67474 -14.25202 -14.07251 -13.76670 -13.63829 -13.59166 -13.09930 -12.89229 -12.33727 -11.94528 -11.78971 -11.57748 -11.50569 -11.05774 -10.83018 -10.59633 -10.19880 -10.18389 -10.12236 -9.99760 -9.74284 -9.48570 -9.15694 -8.80949 -8.59454 -6.98363 -5.93710 -3.29848 0.29365 1.13706 1.50170 1.55632 3.15321 3.19894 3.36352 3.51842 3.55691 4.42576 4.55516 4.73381 4.96651 5.00367 5.16396 5.24297 5.30615 5.42207 5.49794 5.66171 5.82941 6.01966 6.04163 6.10080 6.16175 6.31273 6.42656 6.57574 6.64534 6.68941 6.72193 6.92760 7.56937 7.97001 8.17926 8.33688 8.94655 9.73233 10.10575 11.22124 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.036670 B = 0.003780 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.381703 B = 7405.979966 C = 7675.879071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.086 0.914 9 N -0.607 5.607 10 C 0.129 3.871 11 C -0.141 4.141 12 C 0.149 3.851 13 N -0.703 5.703 14 C 0.587 3.413 15 O -0.530 6.530 16 C 0.053 3.947 17 C -0.134 4.134 18 C -0.285 4.285 19 S 0.462 5.538 20 N -0.519 5.519 21 C -0.141 4.141 22 C 0.152 3.848 23 H 0.263 0.737 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.405 0.595 30 H 0.173 0.827 31 H 0.187 0.813 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.181 -9.447 -13.716 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.389 4.389 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.182 4.182 12 C 0.046 3.954 13 N -0.353 5.353 14 C 0.367 3.633 15 O -0.405 6.405 16 C -0.122 4.122 17 C -0.167 4.167 18 C -0.433 4.433 19 S 0.617 5.383 20 N -0.354 5.354 21 C -0.180 4.180 22 C 0.026 3.974 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.046 0.954 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.241 0.759 30 H 0.190 0.810 31 H 0.204 0.796 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.375 -10.469 -13.784 25.244 hybrid contribution 0.947 2.371 0.232 2.563 sum 19.322 -8.098 -13.553 24.952 Atomic orbital electron populations 1.69840 1.05739 1.26576 1.52980 1.25274 0.95222 0.97617 0.99393 0.86971 0.80088 0.84620 0.77120 1.21567 1.23120 1.19447 1.18920 0.84927 0.94791 1.40294 0.89624 1.44403 1.08673 1.33370 1.46580 1.21316 0.97260 0.92013 0.89140 1.22410 0.97579 0.98648 0.99521 1.21097 0.94518 0.93798 0.85980 1.46138 1.32985 1.22322 1.33863 1.17252 0.80103 0.84847 0.81063 1.90812 1.64267 1.19508 1.65942 1.21326 0.98617 0.91318 1.00931 1.21448 0.96671 1.03126 0.95430 1.27203 1.08445 1.02491 1.05208 1.80512 1.15729 1.18789 1.23268 1.72282 1.29367 1.17428 1.16335 1.22336 0.99636 0.97587 0.98475 1.20864 0.92488 0.91482 0.92604 0.92765 0.90685 0.95409 0.91530 0.92260 0.89655 0.75949 0.81011 0.79610 0.92029 0.91246 0.95644 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.08 13.97 55.49 0.78 -27.31 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.85 24.34 -169.99 -4.14 18.71 16 4 H -0.29 -7.26 6.62 56.52 0.37 -6.89 16 5 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.27 -6.89 6.64 56.52 0.38 -6.51 16 7 C -0.26 -7.33 10.03 -15.06 -0.15 -7.48 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 N -0.61 -14.52 2.77 -172.32 -0.48 -15.00 16 10 C 0.13 2.92 4.20 -3.71 -0.02 2.91 16 11 C -0.14 -2.71 5.66 -26.59 -0.15 -2.86 16 12 C 0.15 2.51 2.41 -67.87 -0.16 2.35 16 13 N -0.70 -10.37 5.07 -54.74 -0.28 -10.65 16 14 C 0.59 9.03 7.77 -12.39 -0.10 8.93 16 15 O -0.53 -9.65 16.32 5.31 0.09 -9.56 16 16 C 0.05 0.67 6.66 -84.06 -0.56 0.11 16 17 C -0.13 -1.37 9.98 -40.27 -0.40 -1.77 16 18 C -0.28 -2.01 11.41 29.58 0.34 -1.67 16 19 S 0.46 3.39 23.20 -107.50 -2.49 0.90 16 20 N -0.52 -5.87 10.71 24.84 0.27 -5.61 16 21 C -0.14 -2.26 5.55 -26.61 -0.15 -2.40 16 22 C 0.15 2.96 6.52 -3.71 -0.02 2.93 16 23 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 24 H 0.08 1.86 4.49 -51.93 -0.23 1.63 16 25 H 0.03 0.64 7.07 -51.93 -0.37 0.27 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 29 H 0.41 5.32 8.07 -40.82 -0.33 4.99 16 30 H 0.17 1.66 7.99 -52.49 -0.42 1.24 16 31 H 0.19 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 LS Contribution 300.43 15.07 4.53 4.53 Total: -1.00 -33.07 300.43 -7.50 -40.57 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.30 Total: 1.76 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.47 Total: 1.65 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.29 Total: -58.56 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.14 Total: 18.71 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.49 Total: 0.90 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.07 -7.50 -40.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705404551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.391 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds