Wall clock time and date at job start Fri Apr 10 2020 14:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 14 14 C 1.34781 * 119.99981 * 84.78441 * 13 12 11 15 15 O 1.21564 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.47698 * 119.99676 * 179.97438 * 14 13 12 17 17 C 1.39489 * 122.09874 * 179.74380 * 16 14 13 18 18 C 1.35001 * 111.67757 * 179.78494 * 17 16 14 19 19 S 1.71756 * 105.45371 * 0.43038 * 18 17 16 20 20 N 1.30603 * 122.10217 * 0.03015 * 16 14 13 21 21 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 22 22 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 23 23 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 25 25 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 26 26 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 27 27 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 28 28 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 29 29 H 0.96997 * 120.00118 * 264.79365 * 13 12 11 30 30 H 1.07997 * 124.16044 * 359.97438 * 17 16 14 31 31 H 1.08000 * 127.27148 * 180.16437 * 18 17 16 32 32 H 1.09002 * 109.49848 * 178.74812 * 21 12 11 33 33 H 1.08999 * 109.49849 * 58.64620 * 21 12 11 34 34 H 1.09004 * 109.59094 * 246.19900 * 22 9 7 35 35 H 1.09001 * 109.59077 * 6.49172 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1713 -2.6584 -3.1399 14 6 7.2003 -2.0802 -3.7905 15 8 7.5960 -0.9828 -3.4486 16 6 7.8479 -2.7805 -4.9182 17 6 8.9121 -2.2209 -5.6254 18 6 9.3446 -3.0406 -6.6070 19 16 8.3348 -4.4275 -6.5230 20 7 7.4566 -3.9601 -5.3195 21 6 4.8755 -2.9898 -1.0921 22 6 4.2351 -2.2628 0.0946 23 1 -0.4850 0.8401 0.0004 24 1 2.9908 0.3501 -1.7559 25 1 4.5579 0.3822 -0.9097 26 1 3.7035 -1.5726 -3.0945 27 1 4.9277 -0.2876 -3.2372 28 1 6.2781 -1.3980 -1.4672 29 1 5.8557 -3.5342 -3.4126 30 1 9.3397 -1.2524 -5.4118 31 1 10.1518 -2.8604 -7.3014 32 1 5.6320 -3.6849 -0.7278 33 1 4.1091 -3.5392 -1.6388 34 1 5.0116 -1.7874 0.6940 35 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705404551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:36 Heat of formation + Delta-G solvation = 8.258853 kcal Electronic energy + Delta-G solvation = -19633.942802 eV Core-core repulsion = 16565.439068 eV Total energy + Delta-G solvation = -3068.503735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.59532 -39.95829 -38.82397 -36.17175 -34.14063 -32.67278 -32.02271 -31.71537 -27.99924 -26.44555 -24.48580 -23.88345 -22.40865 -21.49745 -20.90679 -19.27346 -19.04393 -18.53117 -17.57573 -16.79215 -16.56846 -15.99460 -15.77829 -15.38978 -15.32675 -14.81384 -14.60213 -14.51496 -14.27262 -14.09264 -13.84549 -13.46538 -12.74649 -12.61975 -12.32280 -12.25499 -12.22456 -12.04491 -11.79361 -11.53593 -11.49535 -11.08866 -10.86126 -10.76053 -10.19917 -9.74293 -8.99197 -8.18658 -5.50396 -0.44163 0.53903 0.72813 0.79463 1.28704 1.39159 1.48046 2.04591 2.13550 2.39701 3.02058 3.31277 3.63119 3.76860 3.84999 3.90577 4.18018 4.26529 4.41125 4.42489 4.54488 4.62951 4.65390 4.79525 4.85866 4.89839 4.96381 5.04085 5.11465 5.24385 5.36527 5.44550 5.84990 6.11408 6.43645 6.88417 7.04448 7.59321 8.00556 9.00987 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.036670 B = 0.003780 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.381703 B = 7405.979966 C = 7675.879071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.031 4.031 3 Si 0.939 3.061 4 H -0.280 1.280 5 H -0.308 1.308 6 H -0.263 1.263 7 C -0.247 4.247 8 H 0.060 0.940 9 N -0.619 5.619 10 C 0.127 3.873 11 C -0.131 4.131 12 C 0.158 3.842 13 N -0.696 5.696 14 C 0.584 3.416 15 O -0.566 6.566 16 C 0.026 3.974 17 C -0.158 4.158 18 C -0.265 4.265 19 S 0.541 5.459 20 N -0.553 5.553 21 C -0.126 4.126 22 C 0.145 3.855 23 H 0.262 0.738 24 H 0.051 0.949 25 H 0.030 0.970 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.415 0.585 30 H 0.169 0.831 31 H 0.224 0.776 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.016 -10.835 -15.557 29.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.226 4.226 3 Si 0.769 3.231 4 H -0.207 1.207 5 H -0.237 1.237 6 H -0.187 1.187 7 C -0.377 4.377 8 H 0.078 0.922 9 N -0.344 5.344 10 C 0.001 3.999 11 C -0.171 4.171 12 C 0.054 3.946 13 N -0.346 5.346 14 C 0.367 3.633 15 O -0.445 6.445 16 C -0.146 4.146 17 C -0.190 4.190 18 C -0.414 4.414 19 S 0.695 5.305 20 N -0.390 5.390 21 C -0.165 4.165 22 C 0.020 3.980 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.252 0.748 30 H 0.186 0.814 31 H 0.241 0.759 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.262 -11.886 -15.640 28.947 hybrid contribution 0.143 2.605 0.677 2.696 sum 21.405 -9.280 -14.963 27.716 Atomic orbital electron populations 1.69952 1.07230 1.27164 1.55726 1.25841 0.95772 1.00644 1.00383 0.86026 0.78879 0.80884 0.77354 1.20711 1.23662 1.18725 1.18912 0.86618 0.93719 1.38412 0.92207 1.44530 1.08043 1.34571 1.47271 1.21277 0.96521 0.92074 0.90046 1.22244 0.97979 0.98885 0.98001 1.20825 0.93566 0.93637 0.86606 1.45933 1.32885 1.22503 1.33320 1.17707 0.79699 0.84497 0.81439 1.90778 1.65327 1.21160 1.67237 1.20996 1.00126 0.92225 1.01281 1.21480 0.96946 1.03839 0.96687 1.27637 1.08362 1.01333 1.04074 1.80244 1.13371 1.16993 1.19877 1.71973 1.31339 1.17229 1.18474 1.22162 1.00181 0.97317 0.96851 1.21092 0.92047 0.90675 0.94187 0.92928 0.93090 0.95191 0.92007 0.92182 0.90571 0.74835 0.81360 0.75938 0.88618 0.91298 0.94464 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.69 13.97 21.65 0.30 -60.38 16 2 C -0.03 -1.87 5.23 84.86 0.44 -1.42 16 3 Si 0.94 48.07 24.34 68.60 1.67 49.74 16 4 H -0.28 -13.82 6.62 99.48 0.66 -13.16 16 5 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 6 H -0.26 -12.99 6.64 99.48 0.66 -12.33 16 7 C -0.25 -14.10 10.03 84.03 0.84 -13.26 16 8 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 9 N -0.62 -29.51 2.77 -699.09 -1.94 -31.44 16 10 C 0.13 5.70 4.20 86.36 0.36 6.06 16 11 C -0.13 -4.94 5.66 30.68 0.17 -4.77 16 12 C 0.16 5.11 2.41 45.03 0.11 5.22 16 13 N -0.70 -19.64 5.07 -445.37 -2.26 -21.90 16 14 C 0.58 17.57 7.77 86.74 0.67 18.24 16 15 O -0.57 -20.63 16.32 -3.92 -0.06 -20.69 16 16 C 0.03 0.62 6.66 42.13 0.28 0.90 16 17 C -0.16 -2.91 9.98 21.83 0.22 -2.69 16 18 C -0.27 -2.75 11.41 67.07 0.76 -1.98 16 19 S 0.54 5.95 23.20 -56.49 -1.31 4.64 16 20 N -0.55 -11.23 10.71 -75.33 -0.81 -12.04 16 21 C -0.13 -3.77 5.55 30.67 0.17 -3.60 16 22 C 0.15 5.44 6.52 86.37 0.56 6.01 16 23 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.05 2.53 4.49 -2.39 -0.01 2.52 16 25 H 0.03 1.34 7.07 -2.38 -0.02 1.33 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.08 2.66 7.58 -2.39 -0.02 2.64 16 29 H 0.41 10.18 8.07 -92.71 -0.75 9.43 16 30 H 0.17 3.12 7.99 -2.91 -0.02 3.10 16 31 H 0.22 0.53 8.06 -2.91 -0.02 0.50 16 32 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 2.61 7.93 -2.39 -0.02 2.59 16 Total: -1.00 -73.43 300.43 0.47 -72.96 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.27 Total: 10.43 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 4.60 Total: 8.70 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -4.70 Total: -125.76 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.06 Total: -20.69 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.67 Total: 49.74 kcal Atomic # 16 Polarization: 5.95 SS G_CDS: -1.31 Total: 4.64 kcal Total: -73.43 0.47 -72.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705404551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.215 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds