Wall clock time and date at job start Fri Apr 10 2020 14:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00027 * 2 1 4 4 H 1.48495 * 109.47268 * 270.00597 * 3 2 1 5 5 H 1.48496 * 109.47048 * 30.01038 * 3 2 1 6 6 H 1.48498 * 109.46621 * 150.00537 * 3 2 1 7 7 C 1.38807 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00074 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00103 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00167 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.85006 * 314.82917 * 10 9 7 12 12 C 1.53785 * 113.61658 * 86.02080 * 10 9 7 13 13 C 1.53783 * 87.07983 * 89.20136 * 12 10 9 14 14 H 1.08998 * 113.61781 * 140.06602 * 13 12 10 15 15 N 1.46504 * 113.61633 * 270.88484 * 13 12 10 16 16 C 1.34776 * 120.00069 * 201.67361 * 15 13 12 17 17 O 1.21275 * 120.00138 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99617 * 180.02562 * 16 15 13 19 19 C 1.50700 * 109.46879 * 180.02562 * 18 16 15 20 20 C 1.33638 * 126.03758 * 89.99805 * 19 18 16 21 21 N 1.31784 * 114.49802 * 180.27137 * 20 19 18 22 22 C 1.29021 * 117.12791 * 359.48178 * 21 20 19 23 23 S 1.70982 * 110.16337 * 0.49405 * 22 21 20 24 24 C 1.53786 * 87.08345 * 25.43344 * 13 12 10 25 25 H 0.97008 * 119.99705 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99900 * 359.97438 * 9 7 2 27 27 H 1.09000 * 113.61551 * 334.65805 * 12 10 9 28 28 H 1.08994 * 113.69160 * 203.75526 * 12 10 9 29 29 H 0.97009 * 119.99651 * 21.67565 * 15 13 12 30 30 H 1.08998 * 109.47128 * 60.00340 * 18 16 15 31 31 H 1.08996 * 109.47059 * 299.99570 * 18 16 15 32 32 H 1.08004 * 122.75265 * 359.97438 * 20 19 18 33 33 H 1.08000 * 124.92281 * 180.23045 * 22 21 20 34 34 H 1.08992 * 113.61339 * 89.11216 * 24 13 12 35 35 H 1.09000 * 113.61266 * 220.02368 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 1 3.7107 -3.1914 0.7116 12 6 4.3348 -3.0537 -1.4067 13 6 5.6399 -2.2413 -1.4509 14 1 6.4716 -2.7758 -1.9098 15 7 5.4705 -0.8872 -1.9838 16 6 6.5300 -0.2241 -2.4882 17 8 7.6234 -0.7486 -2.5013 18 6 6.3558 1.1691 -3.0358 19 6 7.6820 1.6820 -3.5348 20 6 8.1648 1.5392 -4.7727 21 7 9.3546 2.0740 -4.9603 22 6 9.8978 2.6688 -3.9524 23 16 8.8699 2.5760 -2.5892 24 6 5.6383 -2.3033 0.0857 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3621 -0.0014 27 1 3.5934 -2.7287 -2.1366 28 1 4.4916 -4.1322 -1.4138 29 1 4.5958 -0.4678 -1.9735 30 1 5.9850 1.8252 -2.2484 31 1 5.6414 1.1492 -3.8587 32 1 7.6263 1.0235 -5.5540 33 1 10.8638 3.1515 -3.9665 34 1 6.1512 -3.1768 0.4880 35 1 5.9490 -1.3726 0.5605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022240188.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:51 Heat of formation + Delta-G solvation = 49.515305 kcal Electronic energy + Delta-G solvation = -19528.109968 eV Core-core repulsion = 16461.395248 eV Total energy + Delta-G solvation = -3066.714721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.22899 -39.55491 -38.08703 -33.81627 -33.11724 -32.42223 -30.56217 -27.96892 -25.38898 -25.06022 -24.26146 -22.44411 -20.63549 -20.05209 -19.13550 -18.13784 -17.69591 -17.07661 -16.10338 -15.49176 -15.19603 -14.72253 -14.63589 -14.26016 -14.10846 -14.01355 -13.41659 -13.15829 -12.88014 -12.62033 -12.14843 -12.06504 -11.75872 -11.34485 -11.13010 -10.97918 -10.51952 -10.37595 -9.93428 -9.79675 -9.74752 -9.70325 -9.34876 -9.06699 -9.02489 -8.77819 -7.43239 -5.91488 -3.29035 0.56840 1.22992 1.62307 2.66786 2.70515 3.17436 3.22814 3.29609 3.37478 4.18847 4.42134 4.53578 4.83098 4.89535 4.98019 5.05565 5.10923 5.19512 5.30333 5.31397 5.56009 5.58448 5.69092 5.99078 6.01247 6.11367 6.17784 6.40548 6.52627 6.66766 6.88181 7.55742 7.68925 7.86325 8.28232 8.31972 9.04686 9.76297 9.95406 11.26567 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.004971 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.753760 B = 5630.930052 C = 6548.517357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.872 3.128 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.094 0.906 9 N -0.734 5.734 10 C 0.167 3.833 11 H 0.061 0.939 12 C -0.175 4.175 13 C 0.125 3.875 14 H 0.092 0.908 15 N -0.703 5.703 16 C 0.514 3.486 17 O -0.538 6.538 18 C -0.072 4.072 19 C -0.191 4.191 20 C 0.041 3.959 21 N -0.470 5.470 22 C 0.011 3.989 23 S 0.134 5.866 24 C -0.165 4.165 25 H 0.261 0.739 26 H 0.360 0.640 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.410 0.590 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.174 0.826 33 H 0.198 0.802 34 H 0.091 0.909 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.890 3.273 -5.668 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.702 3.298 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.111 0.889 9 N -0.377 5.377 10 C 0.057 3.943 11 H 0.079 0.921 12 C -0.216 4.216 13 C 0.019 3.981 14 H 0.110 0.890 15 N -0.356 5.356 16 C 0.299 3.701 17 O -0.415 6.415 18 C -0.114 4.114 19 C -0.313 4.313 20 C -0.110 4.110 21 N -0.183 5.183 22 C -0.287 4.287 23 S 0.386 5.614 24 C -0.204 4.204 25 H 0.071 0.929 26 H 0.194 0.806 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.247 0.753 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.191 0.809 33 H 0.214 0.786 34 H 0.110 0.890 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.806 3.208 -5.156 17.869 hybrid contribution -0.342 1.026 -0.610 1.241 sum 16.464 4.234 -5.766 17.950 Atomic orbital electron populations 1.69682 1.05050 1.25942 1.56845 1.24666 0.95194 0.96985 1.01871 0.86742 0.79598 0.85527 0.77962 1.20718 1.21326 1.20249 1.19066 0.80257 0.94897 1.43549 0.88857 1.42602 1.04020 1.01466 1.89592 1.21150 0.89732 0.89209 0.94244 0.92092 1.24017 0.96310 0.98874 1.02431 1.21791 0.99298 0.82744 0.94230 0.89020 1.45906 1.11828 1.16703 1.61148 1.20351 0.84655 0.87210 0.77864 1.90694 1.25299 1.68916 1.56638 1.20114 0.93301 0.94669 1.03333 1.25295 1.01476 1.07348 0.97134 1.21676 0.91779 1.01284 0.96291 1.66296 1.10015 1.10657 1.31370 1.28311 1.04912 1.03870 0.91574 1.84021 1.11186 1.49475 1.16672 1.23752 0.98242 1.02294 0.96122 0.92856 0.80624 0.90292 0.89662 0.75290 0.87415 0.86347 0.80880 0.78576 0.89045 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.97 55.49 0.78 -26.82 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.87 20.06 27.74 -169.99 -4.71 15.35 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.02 6.52 56.52 0.37 -5.65 16 7 C -0.25 -6.46 10.47 -15.06 -0.16 -6.61 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 N -0.73 -15.70 4.22 -52.63 -0.22 -15.92 16 10 C 0.17 2.95 4.53 -67.11 -0.30 2.65 16 11 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 12 C -0.18 -2.71 7.61 -25.92 -0.20 -2.90 16 13 C 0.12 1.89 4.28 -67.11 -0.29 1.60 16 14 H 0.09 1.39 7.55 -51.93 -0.39 1.00 16 15 N -0.70 -10.71 4.95 -53.01 -0.26 -10.97 16 16 C 0.51 7.71 7.82 -10.98 -0.09 7.62 16 17 O -0.54 -9.62 15.68 5.56 0.09 -9.53 16 18 C -0.07 -0.86 6.24 -29.03 -0.18 -1.04 16 19 C -0.19 -2.38 5.09 -35.92 -0.18 -2.57 16 20 C 0.04 0.52 11.25 -19.18 -0.22 0.30 16 21 N -0.47 -6.12 10.54 -15.75 -0.17 -6.29 16 22 C 0.01 0.11 12.23 51.58 0.63 0.74 16 23 S 0.13 1.47 23.22 -107.50 -2.50 -1.02 16 24 C -0.16 -2.49 7.58 -25.91 -0.20 -2.69 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.36 7.55 4.85 -40.82 -0.20 7.35 16 27 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.41 6.46 7.18 -40.82 -0.29 6.17 16 30 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.17 1.88 8.06 -52.48 -0.42 1.46 16 33 H 0.20 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 312.69 15.07 4.71 4.71 Total: -1.00 -31.85 312.69 -7.84 -39.69 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -4.28 Total: 13.55 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.27 Total: -2.74 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.12 Total: -60.00 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.71 Total: 15.35 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.50 Total: -1.02 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.85 -7.84 -39.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022240188.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.204 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds