Wall clock time and date at job start Fri Apr 10 2020 14:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00027 * 2 1 4 4 H 1.48495 * 109.47268 * 270.00597 * 3 2 1 5 5 H 1.48496 * 109.47048 * 30.01038 * 3 2 1 6 6 H 1.48498 * 109.46621 * 150.00537 * 3 2 1 7 7 C 1.38807 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00074 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00103 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00167 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.85006 * 314.82917 * 10 9 7 12 12 C 1.53785 * 113.61658 * 86.02080 * 10 9 7 13 13 C 1.53783 * 87.07983 * 89.20136 * 12 10 9 14 14 H 1.08998 * 113.61781 * 140.06602 * 13 12 10 15 15 N 1.46504 * 113.61633 * 270.88484 * 13 12 10 16 16 C 1.34776 * 120.00069 * 201.67361 * 15 13 12 17 17 O 1.21275 * 120.00138 * 0.02562 * 16 15 13 18 18 C 1.50704 * 119.99617 * 180.02562 * 16 15 13 19 19 C 1.50700 * 109.46879 * 180.02562 * 18 16 15 20 20 C 1.33638 * 126.03758 * 89.99805 * 19 18 16 21 21 N 1.31784 * 114.49802 * 180.27137 * 20 19 18 22 22 C 1.29021 * 117.12791 * 359.48178 * 21 20 19 23 23 S 1.70982 * 110.16337 * 0.49405 * 22 21 20 24 24 C 1.53786 * 87.08345 * 25.43344 * 13 12 10 25 25 H 0.97008 * 119.99705 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99900 * 359.97438 * 9 7 2 27 27 H 1.09000 * 113.61551 * 334.65805 * 12 10 9 28 28 H 1.08994 * 113.69160 * 203.75526 * 12 10 9 29 29 H 0.97009 * 119.99651 * 21.67565 * 15 13 12 30 30 H 1.08998 * 109.47128 * 60.00340 * 18 16 15 31 31 H 1.08996 * 109.47059 * 299.99570 * 18 16 15 32 32 H 1.08004 * 122.75265 * 359.97438 * 20 19 18 33 33 H 1.08000 * 124.92281 * 180.23045 * 22 21 20 34 34 H 1.08992 * 113.61339 * 89.11216 * 24 13 12 35 35 H 1.09000 * 113.61266 * 220.02368 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 1 3.7107 -3.1914 0.7116 12 6 4.3348 -3.0537 -1.4067 13 6 5.6399 -2.2413 -1.4509 14 1 6.4716 -2.7758 -1.9098 15 7 5.4705 -0.8872 -1.9838 16 6 6.5300 -0.2241 -2.4882 17 8 7.6234 -0.7486 -2.5013 18 6 6.3558 1.1691 -3.0358 19 6 7.6820 1.6820 -3.5348 20 6 8.1648 1.5392 -4.7727 21 7 9.3546 2.0740 -4.9603 22 6 9.8978 2.6688 -3.9524 23 16 8.8699 2.5760 -2.5892 24 6 5.6383 -2.3033 0.0857 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3621 -0.0014 27 1 3.5934 -2.7287 -2.1366 28 1 4.4916 -4.1322 -1.4138 29 1 4.5958 -0.4678 -1.9735 30 1 5.9850 1.8252 -2.2484 31 1 5.6414 1.1492 -3.8587 32 1 7.6263 1.0235 -5.5540 33 1 10.8638 3.1515 -3.9665 34 1 6.1512 -3.1768 0.4880 35 1 5.9490 -1.3726 0.5605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022240188.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:51 Heat of formation + Delta-G solvation = 27.168833 kcal Electronic energy + Delta-G solvation = -19529.078984 eV Core-core repulsion = 16461.395248 eV Total energy + Delta-G solvation = -3067.683737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38545 -40.52984 -39.35223 -35.54349 -34.32793 -33.60311 -32.39722 -28.89471 -26.70730 -26.29765 -25.58805 -23.93240 -21.78713 -21.00848 -20.55608 -19.49810 -19.03919 -18.26057 -17.17131 -16.71079 -16.48561 -16.16062 -15.96932 -15.55109 -15.31523 -14.86157 -14.75978 -14.62013 -14.10401 -13.78456 -13.56198 -13.28843 -13.18525 -12.80802 -12.56184 -12.20488 -12.10310 -11.91630 -11.78827 -11.11254 -11.07527 -10.87932 -10.65941 -10.23558 -10.03093 -9.89485 -9.29301 -8.00219 -5.35491 -0.28189 0.40680 0.78094 1.35800 1.42284 1.49247 1.53871 1.80087 2.25444 2.49145 3.30058 3.39202 3.49016 3.64732 3.72806 3.80442 3.96126 4.05119 4.17038 4.33829 4.36466 4.47762 4.71102 4.84497 4.89074 4.94999 5.03269 5.15812 5.22791 5.33045 5.61411 5.83790 6.23895 6.50595 6.70762 7.08567 7.15911 7.83402 8.02623 9.21108 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019579 B = 0.004971 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.753760 B = 5630.930052 C = 6548.517357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.059 4.059 3 Si 0.939 3.061 4 H -0.257 1.257 5 H -0.302 1.302 6 H -0.255 1.255 7 C -0.230 4.230 8 H 0.058 0.942 9 N -0.733 5.733 10 C 0.147 3.853 11 H 0.055 0.945 12 C -0.162 4.162 13 C 0.126 3.874 14 H 0.097 0.903 15 N -0.706 5.706 16 C 0.516 3.484 17 O -0.569 6.569 18 C -0.069 4.069 19 C -0.211 4.211 20 C 0.031 3.969 21 N -0.501 5.501 22 C 0.018 3.982 23 S 0.145 5.855 24 C -0.148 4.148 25 H 0.257 0.743 26 H 0.365 0.635 27 H 0.059 0.941 28 H 0.112 0.888 29 H 0.408 0.592 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.182 0.818 33 H 0.231 0.769 34 H 0.120 0.880 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.234 4.039 -5.910 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.250 4.250 3 Si 0.765 3.235 4 H -0.182 1.182 5 H -0.229 1.229 6 H -0.180 1.180 7 C -0.361 4.361 8 H 0.076 0.924 9 N -0.377 5.377 10 C 0.038 3.962 11 H 0.073 0.927 12 C -0.203 4.203 13 C 0.021 3.979 14 H 0.115 0.885 15 N -0.357 5.357 16 C 0.302 3.698 17 O -0.448 6.448 18 C -0.111 4.111 19 C -0.332 4.332 20 C -0.120 4.120 21 N -0.215 5.215 22 C -0.278 4.278 23 S 0.397 5.603 24 C -0.187 4.187 25 H 0.066 0.934 26 H 0.199 0.801 27 H 0.078 0.922 28 H 0.130 0.870 29 H 0.245 0.755 30 H 0.139 0.861 31 H 0.158 0.842 32 H 0.199 0.801 33 H 0.247 0.753 34 H 0.138 0.862 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.202 3.942 -5.406 20.334 hybrid contribution -1.038 0.660 -0.507 1.331 sum 18.164 4.602 -5.913 19.649 Atomic orbital electron populations 1.69881 1.07251 1.26652 1.59466 1.25453 0.95959 1.01038 1.02574 0.85657 0.78636 0.79944 0.79234 1.18158 1.22909 1.17974 1.18967 0.82291 0.93469 1.41359 0.92406 1.42494 1.02339 1.03186 1.89719 1.21424 0.91350 0.87796 0.95646 0.92701 1.23920 0.95970 1.00550 0.99831 1.21795 0.98917 0.82870 0.94332 0.88549 1.45962 1.11837 1.16775 1.61173 1.20816 0.83888 0.88057 0.77014 1.90677 1.26373 1.69908 1.57869 1.20169 0.93823 0.92750 1.04379 1.25414 1.02114 1.08247 0.97454 1.21914 0.91973 1.01315 0.96825 1.66339 1.10568 1.12049 1.32522 1.28925 1.05683 1.02449 0.90775 1.83951 1.10832 1.48958 1.16516 1.23716 0.95711 1.03230 0.96093 0.93372 0.80076 0.92227 0.86957 0.75543 0.86100 0.84188 0.80094 0.75307 0.86206 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -59.98 13.97 21.65 0.30 -59.67 16 2 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 3 Si 0.94 40.83 27.74 68.60 1.90 42.74 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.25 -10.05 6.52 99.48 0.65 -9.40 16 7 C -0.23 -12.10 10.47 84.03 0.88 -11.22 16 8 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 9 N -0.73 -30.59 4.22 -320.43 -1.35 -31.95 16 10 C 0.15 4.97 4.53 45.52 0.21 5.17 16 11 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 12 C -0.16 -4.71 7.61 31.12 0.24 -4.48 16 13 C 0.13 3.52 4.28 45.52 0.19 3.72 16 14 H 0.10 2.67 7.55 -2.39 -0.02 2.65 16 15 N -0.71 -19.97 4.95 -440.02 -2.18 -22.15 16 16 C 0.52 14.36 7.82 87.66 0.69 15.04 16 17 O -0.57 -19.32 15.68 -3.01 -0.05 -19.37 16 18 C -0.07 -1.49 6.24 29.10 0.18 -1.31 16 19 C -0.21 -4.84 5.09 24.64 0.13 -4.71 16 20 C 0.03 0.73 11.25 83.66 0.94 1.67 16 21 N -0.50 -12.20 10.54 -203.74 -2.15 -14.35 16 22 C 0.02 0.35 12.23 130.66 1.60 1.94 16 23 S 0.14 2.85 23.22 -56.49 -1.31 1.54 16 24 C -0.15 -4.08 7.58 31.12 0.24 -3.84 16 25 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 26 H 0.36 14.51 4.85 -92.71 -0.45 14.06 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 28 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.41 11.98 7.18 -92.70 -0.67 11.31 16 30 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 33 H 0.23 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -69.58 312.69 0.87 -68.71 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -0.05 Total: 35.26 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 5.75 Total: -0.76 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -5.38 Total: -128.12 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.90 Total: 42.74 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.31 Total: 1.54 kcal Total: -69.58 0.87 -68.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022240188.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.878 kcal (2) G-P(sol) polarization free energy of solvation -69.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds