Wall clock time and date at job start Fri Apr 10 2020 14:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00505 * 2 1 4 4 H 1.48498 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46931 * 299.99652 * 3 2 1 6 6 H 1.48494 * 109.47346 * 59.99651 * 3 2 1 7 7 C 1.38817 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99807 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.85028 * 336.19492 * 10 9 7 12 12 C 1.53779 * 113.61483 * 107.50309 * 10 9 7 13 13 C 1.53784 * 87.08045 * 139.98067 * 12 10 9 14 14 H 1.08994 * 113.61477 * 89.11454 * 13 12 10 15 15 C 1.52997 * 113.61270 * 220.02125 * 13 12 10 16 16 N 1.46498 * 109.47070 * 272.49429 * 15 13 12 17 17 C 1.34783 * 120.00214 * 179.97438 * 16 15 13 18 18 O 1.21632 * 119.99615 * 0.02562 * 17 16 15 19 19 C 1.47103 * 119.99891 * 180.02562 * 17 16 15 20 20 C 1.38387 * 127.99309 * 179.97438 * 19 17 16 21 21 C 1.37571 * 111.26254 * 180.02562 * 20 19 17 22 22 N 1.29560 * 117.94677 * 0.02562 * 21 20 19 23 23 S 1.56306 * 110.37995 * 359.69858 * 22 21 20 24 24 C 1.53779 * 113.61085 * 205.00229 * 10 9 7 25 25 H 0.97006 * 119.99708 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00146 * 0.02562 * 9 7 2 27 27 H 1.09002 * 113.61557 * 25.43179 * 12 10 9 28 28 H 1.09004 * 113.61501 * 254.52599 * 12 10 9 29 29 H 1.08998 * 109.47573 * 32.49481 * 15 13 12 30 30 H 1.09003 * 109.47157 * 152.50001 * 15 13 12 31 31 H 0.96997 * 120.00287 * 0.02562 * 16 15 13 32 32 H 1.07998 * 124.36948 * 359.97273 * 20 19 17 33 33 H 1.07997 * 121.02729 * 179.97438 * 21 20 19 34 34 H 1.08997 * 113.61646 * 105.47219 * 24 10 9 35 35 H 1.08998 * 113.69354 * 334.57527 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3253 -2.3881 0.0016 10 6 2.0578 -3.6569 0.0027 11 1 3.0653 -3.5644 -0.4028 12 6 1.9987 -4.4011 1.3472 13 6 1.8475 -5.6972 0.5335 14 1 2.7981 -6.1633 0.2742 15 6 0.8444 -6.6842 1.1338 16 7 1.5255 -7.5414 2.1072 17 6 0.8351 -8.4925 2.7670 18 8 -0.3534 -8.6395 2.5538 19 6 1.5189 -9.3529 3.7448 20 6 0.9771 -10.3712 4.5093 21 6 1.9300 -10.9525 5.3134 22 7 3.1398 -10.4932 5.2506 23 16 3.2267 -9.3289 4.2114 24 6 1.2597 -4.8293 -0.5918 25 1 -0.4850 0.8401 -0.0004 26 1 0.3553 -2.3880 0.0016 27 1 1.1205 -4.1553 1.9441 28 1 2.9269 -4.3486 1.9164 29 1 0.0458 -6.1335 1.6308 30 1 0.4216 -7.3004 0.3403 31 1 2.4731 -7.4240 2.2775 32 1 -0.0602 -10.6704 4.4792 33 1 1.6772 -11.7660 5.9772 34 1 1.5913 -5.1226 -1.5878 35 1 0.1793 -4.7018 -0.5257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086098894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:41 Heat of formation + Delta-G solvation = 36.910764 kcal Electronic energy + Delta-G solvation = -18542.045118 eV Core-core repulsion = 15474.783823 eV Total energy + Delta-G solvation = -3067.261295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.15839 -39.28188 -38.39724 -34.83966 -33.35575 -31.94021 -30.30536 -27.96762 -25.90857 -25.12652 -23.92244 -22.33070 -21.15432 -20.32276 -19.28167 -18.65978 -17.31392 -17.05227 -16.10465 -15.72267 -15.46724 -14.90575 -14.71692 -14.52873 -13.94892 -13.65347 -13.57122 -13.34799 -12.96774 -11.98406 -11.86946 -11.71849 -11.45860 -11.27459 -11.15047 -10.87421 -10.58026 -10.40096 -10.16126 -10.07989 -10.05759 -9.86666 -9.54682 -9.27043 -9.15311 -8.89691 -6.98659 -5.80434 -3.09353 -0.06749 0.90046 1.48814 1.85428 2.83557 2.87577 3.41150 3.46772 3.49129 4.33645 4.56346 4.60101 4.73155 4.90044 4.93775 5.16878 5.28562 5.43220 5.44057 5.45466 5.74849 5.78024 5.88325 6.06009 6.09046 6.11821 6.25726 6.31171 6.36600 6.55635 6.78091 7.07545 7.21268 7.67661 7.88987 8.38125 9.49332 10.07373 10.41407 11.42002 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033195 B = 0.002823 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.294004 B = 9914.851727 C =10262.862142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.076 0.924 12 C -0.162 4.162 13 C -0.129 4.129 14 H 0.090 0.910 15 C 0.132 3.868 16 N -0.716 5.716 17 C 0.592 3.408 18 O -0.524 6.524 19 C -0.265 4.265 20 C -0.112 4.112 21 C 0.058 3.942 22 N -0.520 5.520 23 S 0.421 5.579 24 C -0.142 4.142 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.399 0.601 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.062 0.938 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.496 -21.835 7.188 23.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.094 0.906 12 C -0.203 4.203 13 C -0.148 4.148 14 H 0.108 0.892 15 C 0.010 3.990 16 N -0.367 5.367 17 C 0.376 3.624 18 O -0.401 6.401 19 C -0.399 4.399 20 C -0.148 4.148 21 C -0.134 4.134 22 N -0.349 5.349 23 S 0.575 5.425 24 C -0.181 4.181 25 H 0.065 0.935 26 H 0.219 0.781 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.233 0.767 32 H 0.193 0.807 33 H 0.201 0.799 34 H 0.081 0.919 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.887 -21.242 7.173 23.455 hybrid contribution -1.217 0.202 0.356 1.284 sum 5.670 -21.040 7.528 23.055 Atomic orbital electron populations 1.69671 1.05150 1.25659 1.57494 1.24776 0.95528 0.97820 1.02831 0.86121 0.78791 0.84087 0.77205 1.20521 1.21843 1.21848 1.19346 0.91093 0.84220 1.42846 0.91030 1.42425 1.05785 0.99900 1.86968 1.21515 0.95351 0.85043 0.92712 0.90598 1.23978 1.01486 0.94828 1.00053 1.22670 0.98395 0.94391 0.99393 0.89198 1.21554 0.95436 0.91493 0.90567 1.45935 1.13106 1.35006 1.42638 1.16745 0.86147 0.79714 0.79775 1.90842 1.14357 1.69844 1.65048 1.26947 1.01958 1.04706 1.06322 1.22149 1.02724 0.94746 0.95138 1.22309 0.86566 1.02789 1.01753 1.72231 1.26061 1.14918 1.21728 1.81709 1.05175 1.28000 1.27641 1.23452 1.01101 0.96937 0.96654 0.93479 0.78053 0.90260 0.92649 0.90690 0.91227 0.76656 0.80667 0.79896 0.91903 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.71 -17.42 5.40 -52.63 -0.28 -17.71 16 10 C 0.17 3.09 4.48 -67.12 -0.30 2.79 16 11 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 12 C -0.16 -2.55 7.43 -25.92 -0.19 -2.74 16 13 C -0.13 -1.60 3.76 -89.80 -0.34 -1.94 16 14 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 15 C 0.13 1.61 5.51 -4.04 -0.02 1.59 16 16 N -0.72 -7.70 5.55 -61.49 -0.34 -8.04 16 17 C 0.59 7.28 7.80 -12.66 -0.10 7.18 16 18 O -0.52 -8.31 16.96 5.25 0.09 -8.22 16 19 C -0.27 -2.62 6.76 -35.93 -0.24 -2.86 16 20 C -0.11 -0.95 10.40 -39.77 -0.41 -1.36 16 21 C 0.06 0.44 11.15 -18.75 -0.21 0.23 16 22 N -0.52 -4.88 11.29 21.63 0.24 -4.64 16 23 S 0.42 3.43 22.81 -107.50 -2.45 0.98 16 24 C -0.14 -2.14 7.39 -25.92 -0.19 -2.33 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 26 H 0.39 10.05 7.92 -40.82 -0.32 9.73 16 27 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.04 7.84 -51.93 -0.41 0.64 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.40 3.35 7.85 -40.82 -0.32 3.03 16 32 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -32.69 318.61 -8.88 -41.57 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.38 Total: 8.10 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -2.25 Total: -6.72 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.34 Total: -57.59 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.45 Total: 0.98 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.69 -8.88 -41.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086098894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.482 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds