Wall clock time and date at job start Fri Apr 10 2020 14:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00505 * 2 1 4 4 H 1.48498 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46931 * 299.99652 * 3 2 1 6 6 H 1.48494 * 109.47346 * 59.99651 * 3 2 1 7 7 C 1.38817 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99807 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.85028 * 336.19492 * 10 9 7 12 12 C 1.53779 * 113.61483 * 107.50309 * 10 9 7 13 13 C 1.53784 * 87.08045 * 139.98067 * 12 10 9 14 14 H 1.08994 * 113.61477 * 89.11454 * 13 12 10 15 15 C 1.52997 * 113.61270 * 220.02125 * 13 12 10 16 16 N 1.46498 * 109.47070 * 272.49429 * 15 13 12 17 17 C 1.34783 * 120.00214 * 179.97438 * 16 15 13 18 18 O 1.21632 * 119.99615 * 0.02562 * 17 16 15 19 19 C 1.47103 * 119.99891 * 180.02562 * 17 16 15 20 20 C 1.38387 * 127.99309 * 179.97438 * 19 17 16 21 21 C 1.37571 * 111.26254 * 180.02562 * 20 19 17 22 22 N 1.29560 * 117.94677 * 0.02562 * 21 20 19 23 23 S 1.56306 * 110.37995 * 359.69858 * 22 21 20 24 24 C 1.53779 * 113.61085 * 205.00229 * 10 9 7 25 25 H 0.97006 * 119.99708 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00146 * 0.02562 * 9 7 2 27 27 H 1.09002 * 113.61557 * 25.43179 * 12 10 9 28 28 H 1.09004 * 113.61501 * 254.52599 * 12 10 9 29 29 H 1.08998 * 109.47573 * 32.49481 * 15 13 12 30 30 H 1.09003 * 109.47157 * 152.50001 * 15 13 12 31 31 H 0.96997 * 120.00287 * 0.02562 * 16 15 13 32 32 H 1.07998 * 124.36948 * 359.97273 * 20 19 17 33 33 H 1.07997 * 121.02729 * 179.97438 * 21 20 19 34 34 H 1.08997 * 113.61646 * 105.47219 * 24 10 9 35 35 H 1.08998 * 113.69354 * 334.57527 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3253 -2.3881 0.0016 10 6 2.0578 -3.6569 0.0027 11 1 3.0653 -3.5644 -0.4028 12 6 1.9987 -4.4011 1.3472 13 6 1.8475 -5.6972 0.5335 14 1 2.7981 -6.1633 0.2742 15 6 0.8444 -6.6842 1.1338 16 7 1.5255 -7.5414 2.1072 17 6 0.8351 -8.4925 2.7670 18 8 -0.3534 -8.6395 2.5538 19 6 1.5189 -9.3529 3.7448 20 6 0.9771 -10.3712 4.5093 21 6 1.9300 -10.9525 5.3134 22 7 3.1398 -10.4932 5.2506 23 16 3.2267 -9.3289 4.2114 24 6 1.2597 -4.8293 -0.5918 25 1 -0.4850 0.8401 -0.0004 26 1 0.3553 -2.3880 0.0016 27 1 1.1205 -4.1553 1.9441 28 1 2.9269 -4.3486 1.9164 29 1 0.0458 -6.1335 1.6308 30 1 0.4216 -7.3004 0.3403 31 1 2.4731 -7.4240 2.2775 32 1 -0.0602 -10.6704 4.4792 33 1 1.6772 -11.7660 5.9772 34 1 1.5913 -5.1226 -1.5878 35 1 0.1793 -4.7018 -0.5257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086098894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:40 Heat of formation + Delta-G solvation = 13.595842 kcal Electronic energy + Delta-G solvation = -18543.056129 eV Core-core repulsion = 15474.783823 eV Total energy + Delta-G solvation = -3068.272306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.07558 -40.15153 -39.55386 -36.11264 -35.06504 -32.75380 -32.08284 -29.12063 -26.81937 -26.43134 -25.68437 -23.27007 -22.35351 -21.24001 -20.48832 -19.58521 -18.97333 -18.05370 -17.10579 -16.77804 -16.63528 -16.16284 -15.94453 -15.45519 -15.32329 -15.01195 -14.66875 -14.38750 -14.22292 -13.42392 -13.20699 -13.04277 -12.92250 -12.66845 -12.45610 -12.14566 -12.04565 -11.78744 -11.59891 -11.54082 -11.24878 -11.02199 -10.83212 -10.80262 -10.18557 -9.81702 -8.95833 -7.93447 -5.21364 -0.77923 0.23096 0.86240 1.20369 1.48569 1.48925 1.58991 1.94520 1.99778 2.57865 3.38701 3.55795 3.74666 3.75680 3.92716 4.02178 4.08832 4.27991 4.37079 4.43350 4.57059 4.70432 4.78795 4.87251 4.98972 5.01704 5.06726 5.20803 5.30142 5.42536 5.47785 5.54343 5.75124 6.29360 6.34556 6.99401 7.34835 8.13786 8.34869 9.30378 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033195 B = 0.002823 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.294004 B = 9914.851727 C =10262.862142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.142 3.858 11 H 0.082 0.918 12 C -0.156 4.156 13 C -0.097 4.097 14 H 0.125 0.875 15 C 0.137 3.863 16 N -0.706 5.706 17 C 0.593 3.407 18 O -0.568 6.568 19 C -0.292 4.292 20 C -0.107 4.107 21 C 0.063 3.937 22 N -0.543 5.543 23 S 0.454 5.546 24 C -0.136 4.136 25 H 0.250 0.750 26 H 0.372 0.628 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.413 0.587 32 H 0.185 0.815 33 H 0.215 0.785 34 H 0.080 0.920 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.565 -23.499 7.654 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.033 3.967 11 H 0.100 0.900 12 C -0.196 4.196 13 C -0.116 4.116 14 H 0.143 0.857 15 C 0.014 3.986 16 N -0.357 5.357 17 C 0.379 3.621 18 O -0.448 6.448 19 C -0.425 4.425 20 C -0.143 4.143 21 C -0.129 4.129 22 N -0.373 5.373 23 S 0.609 5.391 24 C -0.175 4.175 25 H 0.058 0.942 26 H 0.204 0.796 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.250 0.750 32 H 0.202 0.798 33 H 0.231 0.769 34 H 0.098 0.902 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.048 -22.949 7.643 25.825 hybrid contribution -1.804 0.607 0.243 1.919 sum 7.244 -22.342 7.886 24.776 Atomic orbital electron populations 1.69829 1.06713 1.25888 1.59939 1.25587 0.96357 1.01220 1.04109 0.85090 0.78408 0.79930 0.76465 1.18716 1.22264 1.22370 1.19772 0.91614 0.85356 1.40331 0.90233 1.42657 1.05388 1.01282 1.87480 1.21973 0.95694 0.83826 0.95235 0.90018 1.23760 1.01232 0.96045 0.98607 1.22505 0.99534 0.92942 0.96647 0.85747 1.21363 0.94949 0.91481 0.90808 1.45792 1.13686 1.34267 1.41971 1.17025 0.85685 0.79700 0.79732 1.90817 1.16235 1.71162 1.66569 1.26807 1.03408 1.05422 1.06893 1.22409 1.03447 0.94020 0.94459 1.22668 0.85668 1.03000 1.01523 1.72226 1.26939 1.15704 1.22476 1.81507 1.03346 1.27352 1.26858 1.23326 1.00012 0.95727 0.98458 0.94156 0.79647 0.92517 0.91205 0.92809 0.90771 0.75047 0.79765 0.76904 0.90153 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.24 -13.02 9.97 84.03 0.84 -12.18 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.73 -36.09 5.40 -320.44 -1.73 -37.82 16 10 C 0.14 5.14 4.48 45.52 0.20 5.35 16 11 H 0.08 2.85 8.10 -2.39 -0.02 2.84 16 12 C -0.16 -4.68 7.43 31.12 0.23 -4.45 16 13 C -0.10 -2.18 3.76 -10.27 -0.04 -2.22 16 14 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 15 C 0.14 3.16 5.51 86.38 0.48 3.64 16 16 N -0.71 -13.98 5.55 -466.69 -2.59 -16.57 16 17 C 0.59 14.02 7.80 86.57 0.68 14.70 16 18 O -0.57 -17.99 16.96 -4.13 -0.07 -18.06 16 19 C -0.29 -5.32 6.76 24.63 0.17 -5.16 16 20 C -0.11 -1.62 10.40 22.15 0.23 -1.39 16 21 C 0.06 0.81 11.15 84.87 0.95 1.75 16 22 N -0.54 -8.95 11.29 -85.47 -0.96 -9.91 16 23 S 0.45 6.44 22.81 -56.49 -1.29 5.15 16 24 C -0.14 -3.90 7.39 31.12 0.23 -3.67 16 25 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 26 H 0.37 20.03 7.92 -92.71 -0.73 19.29 16 27 H 0.06 1.98 7.90 -2.39 -0.02 1.96 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.50 7.84 -2.39 -0.02 1.48 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.41 5.83 7.85 -92.71 -0.73 5.11 16 32 H 0.19 2.36 8.06 -2.91 -0.02 2.33 16 33 H 0.21 1.24 8.06 -2.91 -0.02 1.21 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 Total: -1.00 -71.67 318.61 -0.25 -71.92 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.34 Total: 24.76 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 4.43 Total: -7.79 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -5.00 Total: -123.85 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.07 Total: -18.06 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 16 Polarization: 6.44 SS G_CDS: -1.29 Total: 5.15 kcal Total: -71.67 -0.25 -71.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086098894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.517 kcal (2) G-P(sol) polarization free energy of solvation -71.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds