Wall clock time and date at job start Fri Apr 10 2020 14:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99890 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00497 * 3 2 1 7 7 C 1.38812 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00285 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.84831 * 336.19675 * 10 9 7 12 12 C 1.53784 * 113.61633 * 107.49989 * 10 9 7 13 13 C 1.53775 * 87.08273 * 139.98087 * 12 10 9 14 14 H 1.08998 * 113.61578 * 89.12004 * 13 12 10 15 15 C 1.53001 * 113.61872 * 220.02072 * 13 12 10 16 16 N 1.46501 * 109.46947 * 272.50137 * 15 13 12 17 17 C 1.34781 * 119.99833 * 180.02562 * 16 15 13 18 18 O 1.21622 * 119.99988 * 359.97438 * 17 16 15 19 19 C 1.47252 * 119.99934 * 180.02562 * 17 16 15 20 20 N 1.30560 * 125.54138 * 179.97438 * 19 17 16 21 21 C 1.30700 * 115.90784 * 179.97438 * 20 19 17 22 22 C 1.34237 * 115.78369 * 0.02562 * 21 20 19 23 23 S 1.71070 * 109.08878 * 359.72447 * 22 21 20 24 24 C 1.53774 * 87.08305 * 334.56972 * 13 12 10 25 25 H 0.97000 * 120.00284 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 27 27 H 1.08997 * 113.61810 * 254.53547 * 12 10 9 28 28 H 1.09000 * 113.61073 * 25.43207 * 12 10 9 29 29 H 1.09006 * 109.46621 * 32.49632 * 15 13 12 30 30 H 1.08995 * 109.47690 * 152.49685 * 15 13 12 31 31 H 0.96997 * 120.00126 * 359.97438 * 16 15 13 32 32 H 1.08001 * 122.10946 * 179.97438 * 21 20 19 33 33 H 1.08000 * 125.45696 * 180.02562 * 22 21 20 34 34 H 1.08999 * 113.61706 * 270.88005 * 24 13 12 35 35 H 1.08998 * 113.61866 * 139.98025 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 3.0656 -3.5638 -0.4059 12 6 1.9991 -4.4021 1.3433 13 6 1.8480 -5.6975 0.5286 14 1 2.7985 -6.1634 0.2689 15 6 0.8449 -6.6851 1.1280 16 7 1.5261 -7.5431 2.1007 17 6 0.8360 -8.4956 2.7589 18 8 -0.3523 -8.6425 2.5456 19 6 1.5206 -9.3575 3.7370 20 7 0.9601 -10.3093 4.4330 21 6 1.7473 -10.9595 5.2490 22 6 3.0294 -10.5620 5.2642 23 16 3.2299 -9.2771 4.1527 24 6 1.2602 -4.8288 -0.5959 25 1 -0.4850 -0.8400 -0.0004 26 1 0.3556 -2.3880 0.0002 27 1 2.9272 -4.3501 1.9126 28 1 1.1209 -4.1568 1.9404 29 1 0.0462 -6.1348 1.6255 30 1 0.4221 -7.3006 0.3341 31 1 2.4739 -7.4261 2.2706 32 1 1.3887 -11.7652 5.8725 33 1 3.8104 -10.9885 5.8761 34 1 0.1798 -4.7002 -0.5290 35 1 1.5916 -5.1212 -1.5922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086232162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:56 Heat of formation + Delta-G solvation = 44.010509 kcal Electronic energy + Delta-G solvation = -18597.228033 eV Core-core repulsion = 15530.274606 eV Total energy + Delta-G solvation = -3066.953427 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.48824 -39.45446 -38.45656 -34.96251 -33.66927 -31.15873 -30.10787 -28.03848 -26.03974 -25.21467 -23.70605 -22.31216 -21.30876 -20.14571 -19.46903 -18.86954 -17.37735 -17.06081 -16.24236 -15.87918 -15.61726 -15.10294 -14.77928 -14.44040 -13.98757 -13.80612 -13.74072 -13.46285 -13.19705 -12.09527 -12.02354 -11.96972 -11.63299 -11.04772 -10.81514 -10.73365 -10.41031 -10.28126 -10.15414 -10.02895 -9.98644 -9.90348 -9.46554 -9.22786 -9.12909 -8.89924 -7.06391 -6.13131 -3.13396 -0.17575 0.72855 1.15729 2.00941 2.57629 2.93237 3.50071 3.53482 3.71262 4.07382 4.53015 4.63177 4.64595 4.82370 4.84488 4.89820 5.08347 5.35788 5.45070 5.54692 5.68283 5.69167 5.82095 5.88157 6.03002 6.16643 6.21372 6.27598 6.47273 6.67504 6.97081 6.98469 7.27466 7.77960 7.82482 8.72625 9.19405 10.05783 10.20635 11.35008 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033687 B = 0.002845 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.981736 B = 9839.018599 C =10175.575186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.045 4.045 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.337 4.337 8 H 0.065 0.935 9 N -0.724 5.724 10 C 0.172 3.828 11 H 0.077 0.923 12 C -0.162 4.162 13 C -0.128 4.128 14 H 0.091 0.909 15 C 0.133 3.867 16 N -0.714 5.714 17 C 0.591 3.409 18 O -0.500 6.500 19 C -0.002 4.002 20 N -0.401 5.401 21 C 0.028 3.972 22 C -0.264 4.264 23 S 0.183 5.817 24 C -0.143 4.143 25 H 0.256 0.744 26 H 0.369 0.631 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.399 0.601 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.080 0.920 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.626 -21.793 8.146 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.468 4.468 8 H 0.083 0.917 9 N -0.364 5.364 10 C 0.059 3.941 11 H 0.095 0.905 12 C -0.204 4.204 13 C -0.147 4.147 14 H 0.109 0.891 15 C 0.011 3.989 16 N -0.366 5.366 17 C 0.371 3.629 18 O -0.373 6.373 19 C -0.278 4.278 20 N -0.117 5.117 21 C -0.129 4.129 22 C -0.404 4.404 23 S 0.437 5.563 24 C -0.183 4.183 25 H 0.067 0.933 26 H 0.202 0.798 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.234 0.766 32 H 0.198 0.802 33 H 0.203 0.797 34 H 0.098 0.902 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.060 -19.609 7.536 22.878 hybrid contribution 0.216 -2.617 0.941 2.790 sum 9.276 -22.226 8.477 25.533 Atomic orbital electron populations 1.70883 1.06068 1.28510 1.53268 1.25803 0.97048 1.01112 1.00277 0.83245 0.74236 0.75609 0.75851 1.21013 1.22248 1.22224 1.20090 0.92052 0.85901 1.48723 0.91678 1.42420 1.04801 1.00887 1.88242 1.21453 0.95338 0.84539 0.92723 0.90470 1.23970 1.01514 0.94848 1.00018 1.22659 0.98461 0.94334 0.99270 0.89064 1.21574 0.95399 0.91410 0.90512 1.45847 1.13084 1.34853 1.42854 1.16711 0.86260 0.79924 0.79957 1.90875 1.13933 1.68818 1.63688 1.27636 0.93656 1.01889 1.04624 1.66639 1.35980 1.04340 1.04749 1.21906 0.88885 1.02289 0.99796 1.26813 1.02736 1.03942 1.06950 1.83923 1.10620 1.29354 1.32441 1.23465 1.00984 0.96999 0.96825 0.93324 0.79787 0.92539 0.90368 0.90595 0.90998 0.76637 0.80176 0.79676 0.90153 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.08 13.70 55.49 0.76 -28.32 16 2 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 3 Si 1.08 25.66 29.92 -169.99 -5.09 20.57 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.34 -9.34 9.97 -15.06 -0.15 -9.49 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -17.78 5.40 -52.64 -0.28 -18.07 16 10 C 0.17 3.23 4.48 -67.12 -0.30 2.93 16 11 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 12 C -0.16 -2.57 7.43 -25.92 -0.19 -2.76 16 13 C -0.13 -1.60 3.75 -89.81 -0.34 -1.93 16 14 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 15 C 0.13 1.65 5.51 -4.04 -0.02 1.63 16 16 N -0.71 -7.95 5.55 -61.44 -0.34 -8.29 16 17 C 0.59 8.02 7.81 -12.60 -0.10 7.92 16 18 O -0.50 -8.82 17.07 5.26 0.09 -8.73 16 19 C 0.00 -0.02 7.46 -14.43 -0.11 -0.13 16 20 N -0.40 -4.99 10.59 -11.51 -0.12 -5.11 16 21 C 0.03 0.24 11.24 -19.44 -0.22 0.02 16 22 C -0.26 -1.68 11.09 29.32 0.33 -1.35 16 23 S 0.18 1.32 22.31 -107.50 -2.40 -1.08 16 24 C -0.14 -2.16 7.39 -25.92 -0.19 -2.35 16 25 H 0.26 7.75 6.77 -40.82 -0.28 7.48 16 26 H 0.37 9.37 6.76 -40.82 -0.28 9.10 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.37 7.90 -51.93 -0.41 0.96 16 29 H 0.08 1.06 7.84 -51.93 -0.41 0.66 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.40 3.42 7.62 -40.82 -0.31 3.11 16 32 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.19 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -34.76 317.07 -8.26 -43.02 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.26 Total: 8.13 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.39 Total: -6.90 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.01 Total: -59.79 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.09 Total: 20.57 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.40 Total: -1.08 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.76 -8.26 -43.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086232162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.030 kcal (2) G-P(sol) polarization free energy of solvation -34.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds