Wall clock time and date at job start Fri Apr 10 2020 14:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47173 * 270.00240 * 3 2 1 5 5 H 1.48500 * 109.46781 * 30.00149 * 3 2 1 6 6 H 1.48495 * 109.47039 * 150.00069 * 3 2 1 7 7 C 1.38816 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99650 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00396 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00137 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.90649 * 23.75583 * 10 9 7 12 12 C 1.53777 * 113.61088 * 155.00333 * 10 9 7 13 13 C 1.53781 * 87.08336 * 89.11940 * 12 10 9 14 14 H 1.09002 * 113.61228 * 270.88201 * 13 12 10 15 15 C 1.53000 * 113.61707 * 140.06298 * 13 12 10 16 16 N 1.46499 * 109.46974 * 176.53042 * 15 13 12 17 17 C 1.34782 * 119.99847 * 180.02562 * 16 15 13 18 18 O 1.21634 * 119.99767 * 359.97438 * 17 16 15 19 19 C 1.47265 * 120.00000 * 180.02562 * 17 16 15 20 20 C 1.35206 * 123.14071 * 179.97438 * 19 17 16 21 21 S 1.70943 * 108.82638 * 179.97438 * 20 19 17 22 22 C 1.70765 * 91.12819 * 359.97438 * 21 20 19 23 23 N 1.28646 * 110.56147 * 359.76838 * 22 21 20 24 24 C 1.53775 * 113.61823 * 252.49932 * 10 9 7 25 25 H 0.97001 * 120.00044 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00159 * 0.02562 * 9 7 2 27 27 H 1.08997 * 113.61941 * 334.56647 * 12 10 9 28 28 H 1.09009 * 113.68972 * 203.67727 * 12 10 9 29 29 H 1.09001 * 109.47043 * 296.52693 * 15 13 12 30 30 H 1.08992 * 109.47277 * 56.52863 * 15 13 12 31 31 H 0.96991 * 120.00303 * 359.97438 * 16 15 13 32 32 H 1.08002 * 125.58873 * 359.95942 * 20 19 17 33 33 H 1.08002 * 124.71686 * 180.02562 * 22 21 20 34 34 H 1.08993 * 113.61636 * 156.33149 * 24 10 9 35 35 H 1.09008 * 113.61006 * 25.43391 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5283 -3.2979 -0.4051 12 6 5.5258 -2.3659 -0.5970 13 6 6.0130 -2.0235 0.8208 14 1 5.9877 -0.9572 1.0455 15 6 7.3485 -2.6757 1.1843 16 7 7.7659 -2.2252 2.5143 17 6 8.9212 -2.6723 3.0454 18 8 9.6169 -3.4500 2.4205 19 6 9.3405 -2.2199 4.3826 20 6 10.4852 -2.6276 4.9756 21 16 10.6085 -1.8814 6.5086 22 6 9.1261 -1.0681 6.2693 23 7 8.6288 -1.3638 5.1203 24 6 4.7876 -2.7923 1.3425 25 1 -0.4850 0.8400 0.0004 26 1 3.8647 -0.3622 -0.0007 27 1 5.6405 -1.5475 -1.3077 28 1 5.9131 -3.3121 -0.9752 29 1 7.2345 -3.7597 1.1870 30 1 8.1031 -2.3915 0.4510 31 1 7.2112 -1.6048 3.0124 32 1 11.2038 -3.3127 4.5505 33 1 8.6716 -0.3955 6.9817 34 1 4.9718 -3.8556 1.4953 35 1 4.3062 -2.3179 2.1977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086320597.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:10 Heat of formation + Delta-G solvation = 42.848964 kcal Electronic energy + Delta-G solvation = -18836.993527 eV Core-core repulsion = 15769.989732 eV Total energy + Delta-G solvation = -3067.003795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.70319 -39.18986 -38.34016 -34.79175 -33.22440 -31.06820 -30.64652 -28.11391 -25.83249 -25.16036 -23.64890 -22.64649 -21.62477 -20.00921 -19.28242 -18.41278 -17.67633 -16.91024 -16.19171 -15.76751 -15.49207 -14.94430 -14.60816 -14.31524 -14.07718 -13.73707 -13.52380 -13.39571 -12.77914 -12.50176 -12.33712 -12.04448 -11.58356 -11.36113 -10.91667 -10.52093 -10.45455 -10.27803 -10.18265 -10.12767 -9.96716 -9.66834 -9.54294 -9.45677 -9.03326 -8.91079 -7.30728 -5.80217 -3.16306 0.16236 0.86277 1.21614 1.69129 3.12510 3.17658 3.35079 3.37933 3.43210 3.79947 4.55836 4.62827 4.81449 4.90450 4.95246 4.96125 5.10417 5.39315 5.42435 5.50253 5.51744 5.75866 5.85444 5.91384 6.12803 6.23738 6.31815 6.49095 6.64083 6.73985 6.90263 6.98631 7.47635 7.97806 8.06008 8.39567 9.17386 9.89681 10.09002 11.37940 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.003349 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.220881 B = 8359.890722 C = 9145.445214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.173 3.827 11 H 0.072 0.928 12 C -0.148 4.148 13 C -0.124 4.124 14 H 0.090 0.910 15 C 0.130 3.870 16 N -0.705 5.705 17 C 0.590 3.410 18 O -0.541 6.541 19 C 0.007 3.993 20 C -0.224 4.224 21 S 0.207 5.793 22 C 0.001 3.999 23 N -0.440 5.440 24 C -0.167 4.167 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.411 0.589 32 H 0.190 0.810 33 H 0.207 0.793 34 H 0.072 0.928 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.095 -3.684 12.975 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.061 3.939 11 H 0.090 0.910 12 C -0.188 4.188 13 C -0.143 4.143 14 H 0.109 0.891 15 C 0.007 3.993 16 N -0.355 5.355 17 C 0.373 3.627 18 O -0.419 6.419 19 C -0.128 4.128 20 C -0.366 4.366 21 S 0.461 5.539 22 C -0.299 4.299 23 N -0.155 5.155 24 C -0.208 4.208 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.247 0.753 32 H 0.207 0.793 33 H 0.223 0.777 34 H 0.091 0.909 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 23.455 -4.047 13.115 27.176 hybrid contribution 0.020 1.356 -0.456 1.430 sum 23.475 -2.691 12.659 26.806 Atomic orbital electron populations 1.69698 1.05101 1.25892 1.57279 1.24678 0.95248 0.97213 1.01894 0.86563 0.79197 0.85008 0.77835 1.21005 1.21660 1.20354 1.19117 0.80415 0.94851 1.43234 0.89014 1.42518 1.03960 1.01633 1.88897 1.20996 0.90091 0.89894 0.92897 0.91018 1.23461 0.98756 1.01609 0.94925 1.22760 0.92564 1.00197 0.98756 0.89146 1.21543 0.96055 0.99276 0.82429 1.45900 1.22226 1.47767 1.19588 1.17072 0.81475 0.80741 0.83418 1.90811 1.54261 1.35383 1.61403 1.20572 0.93907 1.00209 0.98114 1.26648 1.02867 1.06965 1.00101 1.82949 1.21588 1.36163 1.13164 1.28512 0.97993 1.05267 0.98124 1.66971 1.31415 1.12570 1.04517 1.23860 0.96480 0.98821 1.01608 0.92985 0.80506 0.91395 0.89937 0.91128 0.91525 0.75267 0.79288 0.77693 0.90932 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.17 13.97 55.49 0.78 -28.40 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.96 27.74 -169.99 -4.71 17.25 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.25 -6.90 10.45 -15.06 -0.16 -7.06 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 9 N -0.73 -17.03 5.11 -52.64 -0.27 -17.30 16 10 C 0.17 3.25 4.56 -67.12 -0.31 2.94 16 11 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 12 C -0.15 -2.23 7.39 -25.92 -0.19 -2.42 16 13 C -0.12 -1.80 3.63 -89.81 -0.33 -2.12 16 14 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 15 C 0.13 1.73 5.50 -4.04 -0.02 1.71 16 16 N -0.70 -9.41 5.55 -61.43 -0.34 -9.76 16 17 C 0.59 8.35 7.80 -12.59 -0.10 8.25 16 18 O -0.54 -8.94 16.71 5.25 0.09 -8.85 16 19 C 0.01 0.08 6.70 -84.53 -0.57 -0.48 16 20 C -0.22 -2.05 10.62 29.65 0.31 -1.74 16 21 S 0.21 1.20 22.97 -107.50 -2.47 -1.27 16 22 C 0.00 0.01 12.17 51.43 0.63 0.63 16 23 N -0.44 -4.84 10.12 -12.36 -0.13 -4.96 16 24 C -0.17 -2.71 7.43 -25.92 -0.19 -2.91 16 25 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.36 8.29 5.76 -40.82 -0.24 8.06 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.07 8.10 -51.92 -0.42 0.65 16 29 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.41 5.29 7.99 -40.82 -0.33 4.96 16 32 H 0.19 1.55 8.03 -52.49 -0.42 1.13 16 33 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 35 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -33.67 315.43 -7.67 -41.34 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -4.35 Total: 10.31 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.02 Total: -3.12 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.04 Total: -60.41 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.47 Total: -1.27 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.67 -7.67 -41.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086320597.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.190 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds