Wall clock time and date at job start Fri Apr 10 2020 14:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00184 * 3 2 1 6 6 H 1.48506 * 109.46902 * 60.00435 * 3 2 1 7 7 C 1.38817 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21633 * 120.00238 * 359.72097 * 13 12 11 15 15 C 1.47263 * 119.99630 * 179.72408 * 13 12 11 16 16 N 1.33565 * 123.14303 * 0.02562 * 15 13 12 17 17 C 1.28654 * 115.76597 * 180.02562 * 16 15 13 18 18 S 1.70770 * 110.55844 * 359.97438 * 17 16 15 19 19 C 1.35210 * 123.14313 * 179.72855 * 15 13 12 20 20 C 1.50706 * 125.58230 * 0.02562 * 19 15 13 21 21 C 1.53001 * 117.49717 * 188.74439 * 20 19 15 22 22 C 1.53001 * 117.49730 * 120.08493 * 20 19 15 23 23 H 0.96996 * 120.00458 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99857 * 0.02562 * 9 7 2 25 25 H 1.08995 * 109.47424 * 60.00294 * 10 9 7 26 26 H 1.09006 * 109.46868 * 299.99845 * 10 9 7 27 27 H 1.09009 * 109.46730 * 59.99787 * 11 10 9 28 28 H 1.08998 * 109.46846 * 300.00332 * 11 10 9 29 29 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 30 30 H 1.07990 * 124.71800 * 180.02562 * 17 16 15 31 31 H 1.08998 * 115.54958 * 334.41460 * 20 19 15 32 32 H 1.09001 * 117.49696 * 0.02562 * 21 20 19 33 33 H 1.09000 * 117.49413 * 145.02408 * 21 20 19 34 34 H 1.08999 * 117.49635 * 214.97893 * 22 20 19 35 35 H 1.09002 * 117.49763 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8198 -0.0008 12 7 1.7965 -6.0884 -0.0025 13 6 1.1226 -7.2556 -0.0078 14 8 -0.0937 -7.2557 -0.0060 15 6 1.8590 -8.5309 -0.0157 16 7 3.1927 -8.6040 -0.0175 17 6 3.6876 -9.7915 -0.0252 18 16 2.4425 -10.9602 -0.0302 19 6 1.2483 -9.7372 -0.0159 20 6 -0.2413 -9.9659 -0.0088 21 6 -0.7349 -11.3996 0.1960 22 6 -0.8423 -10.7423 -1.1823 23 1 -0.4850 0.8400 0.0004 24 1 0.3556 -2.3880 -0.0005 25 1 2.6855 -3.7149 0.8878 26 1 2.6841 -3.7140 -0.8922 27 1 0.4362 -4.7618 -0.8901 28 1 0.4384 -4.7622 0.8899 29 1 2.7665 -6.0883 -0.0044 30 1 4.7436 -10.0177 -0.0273 31 1 -0.8384 -9.1618 0.4212 32 1 0.0178 -12.1772 0.3262 33 1 -1.6569 -11.5385 0.7605 34 1 -1.8350 -10.4492 -1.5239 35 1 -0.1604 -11.0873 -1.9595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133783610.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:45 Heat of formation + Delta-G solvation = 45.325753 kcal Electronic energy + Delta-G solvation = -18672.654626 eV Core-core repulsion = 15605.758232 eV Total energy + Delta-G solvation = -3066.896393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.68925 -38.60087 -37.51787 -35.64536 -33.79699 -31.26468 -30.69455 -28.10286 -26.02749 -23.78947 -22.80793 -22.49757 -22.13878 -21.35327 -19.68608 -18.38189 -17.38487 -16.80737 -16.07623 -15.69066 -15.38634 -14.82351 -14.56832 -14.51374 -14.42757 -13.73288 -13.43219 -13.14117 -12.87984 -12.38224 -12.27607 -11.91323 -11.43442 -11.34184 -11.08565 -10.94290 -10.80855 -10.77292 -10.13457 -10.06460 -9.86189 -9.68893 -9.61665 -9.17107 -8.93904 -8.74434 -6.96781 -5.77477 -3.07900 0.23197 0.88942 1.31534 1.82880 3.28757 3.32193 3.43893 3.49459 3.51791 3.61933 3.90105 4.19431 4.49280 4.60681 4.66607 4.80486 4.95176 5.24111 5.28097 5.50676 5.52802 5.55588 5.67693 5.75029 5.80215 5.95551 6.01164 6.18747 6.52532 6.74398 6.77249 7.11424 7.68848 7.69696 8.29418 8.40270 9.51595 10.06380 10.41512 11.45279 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035683 B = 0.002946 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.491551 B = 9502.270030 C =10197.334544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.144 3.856 11 C 0.111 3.889 12 N -0.704 5.704 13 C 0.591 3.409 14 O -0.533 6.533 15 C 0.002 3.998 16 N -0.435 5.435 17 C -0.006 4.006 18 S 0.195 5.805 19 C -0.148 4.148 20 C -0.088 4.088 21 C -0.178 4.178 22 C -0.159 4.159 23 H 0.256 0.744 24 H 0.386 0.614 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.408 0.592 30 H 0.205 0.795 31 H 0.150 0.850 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 -28.019 -0.382 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.013 4.013 12 N -0.354 5.354 13 C 0.374 3.626 14 O -0.410 6.410 15 C -0.132 4.132 16 N -0.149 5.149 17 C -0.306 4.306 18 S 0.451 5.549 19 C -0.272 4.272 20 C -0.108 4.108 21 C -0.215 4.215 22 C -0.197 4.197 23 H 0.066 0.934 24 H 0.220 0.780 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.244 0.756 30 H 0.222 0.778 31 H 0.168 0.832 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.118 -28.429 -0.382 28.729 hybrid contribution 0.423 1.823 0.001 1.871 sum 4.541 -26.607 -0.381 26.994 Atomic orbital electron populations 1.69675 1.05144 1.25696 1.57419 1.24778 0.95568 0.97803 1.02762 0.86076 0.78752 0.83889 0.77210 1.20498 1.21787 1.21791 1.19251 0.91098 0.83837 1.43119 0.90955 1.42194 1.06002 0.99567 1.89703 1.20756 0.93473 0.85562 0.98588 1.21639 0.95488 0.81452 1.02700 1.45760 1.11117 1.05368 1.73175 1.16963 0.86382 0.82149 0.77078 1.90755 1.12619 1.86741 1.50882 1.20392 0.88422 0.94807 1.09592 1.66970 1.10037 1.24649 1.13197 1.28326 1.05245 0.90789 1.06210 1.82755 0.95689 1.11117 1.65311 1.24821 1.00899 0.96159 1.05330 1.20740 0.87997 0.97009 1.05061 1.23175 1.03671 0.94303 1.00393 1.23091 1.02933 1.02367 0.91323 0.93436 0.78009 0.95663 0.95672 0.91054 0.91039 0.75647 0.77801 0.83220 0.88730 0.87543 0.87547 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.61 13.06 55.49 0.72 -27.88 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.73 -19.01 5.60 -59.91 -0.34 -19.35 16 10 C 0.14 2.97 6.37 -4.04 -0.03 2.95 16 11 C 0.11 2.02 5.79 -4.04 -0.02 1.99 16 12 N -0.70 -11.21 5.55 -61.43 -0.34 -11.55 16 13 C 0.59 9.64 7.80 -12.59 -0.10 9.54 16 14 O -0.53 -9.81 14.16 5.25 0.07 -9.74 16 15 C 0.00 0.03 6.70 -84.52 -0.57 -0.54 16 16 N -0.43 -5.25 10.12 -12.36 -0.13 -5.37 16 17 C -0.01 -0.05 12.17 51.43 0.63 0.58 16 18 S 0.20 1.45 21.77 -107.50 -2.34 -0.89 16 19 C -0.15 -1.69 6.04 -35.38 -0.21 -1.90 16 20 C -0.09 -0.96 5.40 -91.77 -0.50 -1.45 16 21 C -0.18 -1.37 10.03 -26.69 -0.27 -1.63 16 22 C -0.16 -1.38 10.24 -26.69 -0.27 -1.65 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.39 10.57 7.67 -40.82 -0.31 10.26 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.41 5.87 7.99 -40.82 -0.33 5.54 16 30 H 0.21 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.15 1.98 6.17 -51.93 -0.32 1.66 16 32 H 0.09 0.61 7.28 -51.93 -0.38 0.23 16 33 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -33.49 317.48 -8.43 -41.92 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.27 Total: 10.12 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.58 Total: 0.36 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -0.08 Total: -64.15 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.74 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.34 Total: -0.89 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.49 -8.43 -41.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133783610.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.248 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds