Wall clock time and date at job start Fri Apr 10 2020 14:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48496 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00184 * 3 2 1 6 6 H 1.48506 * 109.46902 * 60.00435 * 3 2 1 7 7 C 1.38817 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21633 * 120.00238 * 359.72097 * 13 12 11 15 15 C 1.47263 * 119.99630 * 179.72408 * 13 12 11 16 16 N 1.33565 * 123.14303 * 0.02562 * 15 13 12 17 17 C 1.28654 * 115.76597 * 180.02562 * 16 15 13 18 18 S 1.70770 * 110.55844 * 359.97438 * 17 16 15 19 19 C 1.35210 * 123.14313 * 179.72855 * 15 13 12 20 20 C 1.50706 * 125.58230 * 0.02562 * 19 15 13 21 21 C 1.53001 * 117.49717 * 188.74439 * 20 19 15 22 22 C 1.53001 * 117.49730 * 120.08493 * 20 19 15 23 23 H 0.96996 * 120.00458 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99857 * 0.02562 * 9 7 2 25 25 H 1.08995 * 109.47424 * 60.00294 * 10 9 7 26 26 H 1.09006 * 109.46868 * 299.99845 * 10 9 7 27 27 H 1.09009 * 109.46730 * 59.99787 * 11 10 9 28 28 H 1.08998 * 109.46846 * 300.00332 * 11 10 9 29 29 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 30 30 H 1.07990 * 124.71800 * 180.02562 * 17 16 15 31 31 H 1.08998 * 115.54958 * 334.41460 * 20 19 15 32 32 H 1.09001 * 117.49696 * 0.02562 * 21 20 19 33 33 H 1.09000 * 117.49413 * 145.02408 * 21 20 19 34 34 H 1.08999 * 117.49635 * 214.97893 * 22 20 19 35 35 H 1.09002 * 117.49763 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8198 -0.0008 12 7 1.7965 -6.0884 -0.0025 13 6 1.1226 -7.2556 -0.0078 14 8 -0.0937 -7.2557 -0.0060 15 6 1.8590 -8.5309 -0.0157 16 7 3.1927 -8.6040 -0.0175 17 6 3.6876 -9.7915 -0.0252 18 16 2.4425 -10.9602 -0.0302 19 6 1.2483 -9.7372 -0.0159 20 6 -0.2413 -9.9659 -0.0088 21 6 -0.7349 -11.3996 0.1960 22 6 -0.8423 -10.7423 -1.1823 23 1 -0.4850 0.8400 0.0004 24 1 0.3556 -2.3880 -0.0005 25 1 2.6855 -3.7149 0.8878 26 1 2.6841 -3.7140 -0.8922 27 1 0.4362 -4.7618 -0.8901 28 1 0.4384 -4.7622 0.8899 29 1 2.7665 -6.0883 -0.0044 30 1 4.7436 -10.0177 -0.0273 31 1 -0.8384 -9.1618 0.4212 32 1 0.0178 -12.1772 0.3262 33 1 -1.6569 -11.5385 0.7605 34 1 -1.8350 -10.4492 -1.5239 35 1 -0.1604 -11.0873 -1.9595 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133783610.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:00:44 Heat of formation + Delta-G solvation = 20.732511 kcal Electronic energy + Delta-G solvation = -18673.721069 eV Core-core repulsion = 15605.758232 eV Total energy + Delta-G solvation = -3067.962836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66559 -39.73320 -38.24521 -37.32777 -35.53425 -33.19697 -31.58778 -29.73774 -27.11503 -25.52591 -23.79179 -23.34849 -23.15195 -22.79746 -20.82898 -19.34907 -19.19701 -17.87814 -17.17007 -16.91403 -16.64063 -16.38895 -15.88601 -15.57254 -15.26435 -15.10904 -15.00562 -14.73947 -14.58663 -13.17397 -13.12845 -13.06673 -13.04539 -12.71821 -12.55126 -12.52501 -12.10189 -12.06988 -11.89408 -11.71142 -11.03345 -11.02584 -10.76065 -10.31621 -10.25601 -9.81568 -9.09739 -7.98709 -5.30670 -0.54831 0.19675 0.59508 0.90885 1.47439 1.49135 1.59422 2.06160 2.22327 2.56446 2.88422 3.09975 3.35330 3.42063 3.74199 3.91398 4.00337 4.03375 4.13917 4.15874 4.17444 4.50115 4.54970 4.66736 4.81749 4.93404 4.95772 5.06965 5.13602 5.14315 5.32783 5.46884 6.21855 6.23198 6.56520 7.06060 7.28232 7.98244 8.22997 9.25172 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035683 B = 0.002946 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.491551 B = 9502.270030 C =10197.334544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.250 4.250 8 H 0.082 0.918 9 N -0.746 5.746 10 C 0.150 3.850 11 C 0.129 3.871 12 N -0.699 5.699 13 C 0.585 3.415 14 O -0.565 6.565 15 C -0.030 4.030 16 N -0.466 5.466 17 C -0.007 4.007 18 S 0.287 5.713 19 C -0.165 4.165 20 C -0.120 4.120 21 C -0.153 4.153 22 C -0.157 4.157 23 H 0.253 0.747 24 H 0.375 0.625 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.417 0.583 30 H 0.244 0.756 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.583 -30.450 -0.477 31.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.381 4.381 8 H 0.100 0.900 9 N -0.389 5.389 10 C 0.023 3.977 11 C 0.005 3.995 12 N -0.350 5.350 13 C 0.371 3.629 14 O -0.444 6.444 15 C -0.164 4.164 16 N -0.180 5.180 17 C -0.306 4.306 18 S 0.545 5.455 19 C -0.289 4.289 20 C -0.141 4.141 21 C -0.190 4.190 22 C -0.195 4.195 23 H 0.062 0.938 24 H 0.207 0.793 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.253 0.747 30 H 0.260 0.740 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.333 -30.912 -0.475 31.557 hybrid contribution -0.222 2.374 0.033 2.385 sum 6.112 -28.537 -0.442 29.188 Atomic orbital electron populations 1.69840 1.06826 1.26307 1.59058 1.25688 0.96481 1.01471 1.03184 0.84972 0.78259 0.79153 0.76715 1.18693 1.21877 1.21890 1.19685 0.91719 0.84832 1.41888 0.90029 1.42405 1.05766 1.00950 1.89785 1.20804 0.93550 0.84191 0.99120 1.21221 0.94762 0.82064 1.01498 1.45614 1.11361 1.04574 1.73498 1.17482 0.86304 0.83129 0.76017 1.90734 1.14078 1.87408 1.52211 1.20036 0.89437 0.93889 1.13031 1.66940 1.09206 1.26758 1.15104 1.29035 1.07396 0.90241 1.03880 1.82379 0.92485 1.07784 1.62881 1.25120 1.02168 0.97385 1.04256 1.20621 0.87929 0.98046 1.07466 1.23298 1.04210 0.92280 0.99206 1.23190 1.02950 1.01640 0.91752 0.93811 0.79327 0.94695 0.94704 0.92335 0.92304 0.74652 0.74022 0.86618 0.86784 0.86494 0.87570 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 3 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.75 -39.55 5.60 -343.45 -1.92 -41.48 16 10 C 0.15 6.24 6.37 86.38 0.55 6.79 16 11 C 0.13 4.89 5.79 86.38 0.50 5.39 16 12 N -0.70 -22.95 5.55 -466.50 -2.59 -25.54 16 13 C 0.59 19.91 7.80 86.62 0.68 20.58 16 14 O -0.56 -22.18 14.16 -4.14 -0.06 -22.23 16 15 C -0.03 -0.82 6.70 40.56 0.27 -0.55 16 16 N -0.47 -10.65 10.12 -193.03 -1.95 -12.61 16 17 C -0.01 -0.09 12.17 130.71 1.59 1.50 16 18 S 0.29 3.30 21.77 -56.49 -1.23 2.07 16 19 C -0.16 -3.60 6.04 24.99 0.15 -3.45 16 20 C -0.12 -2.61 5.40 -11.54 -0.06 -2.67 16 21 C -0.15 -2.03 10.03 30.62 0.31 -1.72 16 22 C -0.16 -2.55 10.24 30.62 0.31 -2.23 16 23 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 24 H 0.37 21.27 7.67 -92.71 -0.71 20.55 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.40 8.14 -2.38 -0.02 1.39 16 27 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.42 12.10 7.99 -92.71 -0.74 11.36 16 30 H 0.24 1.11 8.06 -2.92 -0.02 1.09 16 31 H 0.12 3.31 6.17 -2.39 -0.01 3.30 16 32 H 0.11 1.05 7.28 -2.39 -0.02 1.03 16 33 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -74.31 317.48 -0.16 -74.47 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.32 Total: 30.93 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.60 Total: 6.25 kcal Atomic # 7 Polarization: -133.95 SS G_CDS: -6.19 Total: -140.14 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.06 Total: -22.23 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.23 Total: 2.07 kcal Total: -74.31 -0.16 -74.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133783610.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.205 kcal (2) G-P(sol) polarization free energy of solvation -74.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds