Wall clock time and date at job start Fri Apr 10 2020 14:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00094 * 2 1 4 4 C 1.50697 * 109.47166 * 66.04620 * 3 2 1 5 5 H 1.08005 * 119.99881 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99774 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00573 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99859 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46670 * 60.00318 * 8 6 4 10 10 H 1.48492 * 109.47012 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47254 * 300.00556 * 8 6 4 12 12 C 1.46906 * 110.99840 * 236.04611 * 2 1 3 13 13 C 1.52997 * 109.47042 * 293.95512 * 12 2 1 14 14 H 1.09002 * 109.47268 * 59.99985 * 13 12 2 15 15 O 1.42896 * 109.47074 * 300.00149 * 13 12 2 16 16 C 1.53003 * 109.46971 * 179.97438 * 13 12 2 17 17 N 1.46903 * 109.46899 * 184.99686 * 16 13 12 18 18 C 1.46898 * 110.99673 * 180.02562 * 17 16 13 19 19 C 1.53006 * 109.47006 * 180.02562 * 18 17 16 20 20 N 1.46504 * 109.46883 * 180.02562 * 19 18 17 21 21 C 1.36874 * 126.39943 * 90.00176 * 20 19 18 22 22 C 1.34669 * 106.81918 * 179.97438 * 21 20 19 23 23 N 1.34123 * 108.02125 * 0.02562 * 22 21 20 24 24 C 1.30508 * 109.25485 * 359.72427 * 23 22 21 25 25 H 1.08996 * 109.46999 * 183.95258 * 1 2 3 26 26 H 1.08998 * 109.46919 * 303.95638 * 1 2 3 27 27 H 1.09003 * 109.47119 * 63.95250 * 1 2 3 28 28 H 1.09005 * 109.46679 * 186.05063 * 3 2 1 29 29 H 1.09002 * 109.47239 * 306.04360 * 3 2 1 30 30 H 0.96998 * 120.00468 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47101 * 173.95395 * 12 2 1 32 32 H 1.09002 * 109.47208 * 53.95521 * 12 2 1 33 33 H 0.96703 * 113.99927 * 299.99199 * 15 13 12 34 34 H 1.09003 * 109.46902 * 65.00515 * 16 13 12 35 35 H 1.08993 * 109.47505 * 305.00010 * 16 13 12 36 36 H 1.00894 * 111.00528 * 303.95530 * 17 16 13 37 37 H 1.09001 * 109.47392 * 60.00807 * 18 17 16 38 38 H 1.09001 * 109.47520 * 300.00529 * 18 17 16 39 39 H 1.09001 * 109.47002 * 299.99782 * 19 18 17 40 40 H 1.08993 * 109.46955 * 60.00219 * 19 18 17 41 41 H 1.08001 * 126.59311 * 359.95764 * 21 20 19 42 42 H 1.08000 * 125.99191 * 179.97438 * 22 21 20 43 43 H 1.07997 * 125.65225 * 180.29380 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0747 1.5112 2.0488 6 6 2.0278 3.3491 1.5288 7 7 2.7129 4.0015 0.6154 8 14 1.5828 4.1869 3.1380 9 1 2.1736 3.4293 4.2704 10 1 2.1161 5.5728 3.1385 11 1 0.1056 4.2244 3.2847 12 6 1.9954 -0.7660 -1.1376 13 6 1.6314 -2.2426 -0.9704 14 1 0.5471 -2.3475 -0.9323 15 8 2.2008 -2.7391 0.2425 16 6 2.1791 -3.0403 -2.1556 17 7 1.7286 -4.4351 -2.0571 18 6 2.2371 -5.2330 -3.1808 19 6 1.7476 -6.6762 -3.0441 20 7 2.2553 -7.4722 -4.1644 21 6 3.4362 -8.1632 -4.2005 22 6 3.5071 -8.7506 -5.4102 23 7 2.3999 -8.4267 -6.0944 24 6 1.6428 -7.6655 -5.3523 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4513 -0.9233 28 1 3.0798 1.3443 -0.1083 29 1 1.5612 1.9274 -0.8309 30 1 2.9875 4.9176 0.7773 31 1 3.0797 -0.6611 -1.1757 32 1 1.5611 -0.3873 -2.0629 33 1 3.1652 -2.6772 0.2785 34 1 3.2686 -3.0087 -2.1424 35 1 1.8142 -2.6054 -3.0860 36 1 1.9993 -4.8411 -1.1740 37 1 3.3270 -5.2166 -3.1743 38 1 1.8730 -4.8135 -4.1186 39 1 2.1115 -7.0960 -2.1063 40 1 0.6578 -6.6924 -3.0509 41 1 4.1703 -8.2251 -3.4108 42 1 4.3145 -9.3728 -5.7673 43 1 0.6860 -7.2563 -5.6412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576149310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:32 Heat of formation + Delta-G solvation = 19.836428 kcal Electronic energy + Delta-G solvation = -21363.784669 eV Core-core repulsion = 18059.270383 eV Total energy + Delta-G solvation = -3304.514286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.32583 -38.53469 -36.68952 -35.45576 -33.89727 -32.55064 -30.50230 -29.73500 -28.35223 -27.04788 -25.71989 -23.79689 -22.82851 -21.64254 -21.48975 -21.05845 -20.20993 -17.78626 -16.89188 -16.46595 -16.12896 -15.63829 -15.34705 -14.95911 -14.86329 -14.51131 -14.27687 -14.12436 -13.82115 -13.73831 -13.52700 -13.10251 -12.88484 -12.53023 -12.20884 -11.93890 -11.75879 -11.38435 -11.17901 -10.90868 -10.80310 -10.69306 -10.35096 -10.29606 -10.11227 -9.96324 -9.67215 -9.17500 -8.88317 -8.81625 -8.45743 -7.24256 -6.04962 -4.06232 1.72597 2.36581 2.88723 3.32479 3.36191 3.39535 3.76717 4.17417 4.39644 4.41964 4.42593 4.54680 4.61047 4.76817 4.80461 5.01996 5.06434 5.15898 5.22989 5.28741 5.31630 5.39770 5.42930 5.54676 5.65598 5.93449 6.00889 6.16101 6.25110 6.34327 6.41360 6.53739 6.74957 6.83450 6.99814 7.23200 7.29428 7.76671 7.76712 7.87074 8.06231 8.16793 8.52071 9.01478 9.58036 11.05920 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.054920 B = 0.002176 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.708351 B =12864.077241 C =12934.052376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.024 3.976 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.546 6.546 16 C 0.030 3.970 17 N -0.681 5.681 18 C 0.045 3.955 19 C 0.106 3.894 20 N -0.457 5.457 21 C -0.058 4.058 22 C -0.032 4.032 23 N -0.498 5.498 24 C 0.183 3.817 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.008 0.992 28 H 0.027 0.973 29 H -0.011 1.011 30 H 0.262 0.738 31 H 0.068 0.932 32 H 0.029 0.971 33 H 0.368 0.632 34 H 0.035 0.965 35 H 0.080 0.920 36 H 0.350 0.650 37 H 0.036 0.964 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 -21.638 -8.492 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.350 6.350 16 C -0.100 4.100 17 N -0.314 5.314 18 C -0.086 4.086 19 C -0.017 4.017 20 N -0.140 5.140 21 C -0.190 4.190 22 C -0.180 4.180 23 N -0.216 5.216 24 C -0.099 4.099 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.027 0.973 28 H 0.046 0.954 29 H 0.007 0.993 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.214 0.786 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.169 0.831 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.190 0.810 42 H 0.186 0.814 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.166 -21.832 -8.929 23.616 hybrid contribution 1.352 1.392 0.886 2.133 sum 0.186 -20.440 -8.043 21.967 Atomic orbital electron populations 1.22254 0.88886 0.99667 1.00426 1.62031 1.06944 1.17424 1.38948 1.19741 0.95211 0.81606 0.96662 1.21126 1.34821 0.96885 1.01670 0.91822 1.25001 0.95309 0.97358 0.97061 1.69944 1.38404 1.11510 1.34143 0.86535 0.78718 0.78273 0.83735 1.20131 1.21387 1.20262 1.22698 1.00418 0.93773 0.93654 1.21981 0.99056 0.91014 0.82563 0.87767 1.86599 1.24939 1.84830 1.38609 1.22714 0.97847 0.88581 1.00902 1.60308 1.63437 1.02374 1.05278 1.22258 0.97796 0.92093 0.96423 1.21852 1.01413 0.90490 0.87991 1.45557 1.16770 1.37341 1.14327 1.22771 0.91559 1.02612 1.02105 1.22321 0.98521 1.05029 0.92098 1.70309 1.04669 1.15083 1.31547 1.25069 1.00896 1.01454 0.82516 0.93370 0.90679 0.97310 0.95449 0.99294 0.92879 0.91330 0.95249 0.78607 0.94684 0.90117 0.83109 0.94569 0.90244 0.88972 0.87670 0.81031 0.81432 0.77895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.06 0.55 1.25 16 2 N -0.53 -11.20 4.62 -244.36 -1.13 -12.33 16 3 C 0.19 4.99 4.72 -4.98 -0.02 4.96 16 4 C -0.51 -14.22 8.46 -34.44 -0.29 -14.51 16 5 H 0.06 1.78 7.12 -52.48 -0.37 1.40 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.02 0.40 4.62 -3.82 -0.02 0.39 16 13 C 0.11 1.49 3.07 -26.73 -0.08 1.41 16 14 H 0.10 1.48 6.55 -51.93 -0.34 1.14 16 15 O -0.55 -7.57 12.72 -35.23 -0.45 -8.02 16 16 C 0.03 0.30 5.36 -3.82 -0.02 0.28 16 17 N -0.68 -5.78 6.50 -113.77 -0.74 -6.52 16 18 C 0.04 0.31 6.01 -3.82 -0.02 0.29 16 19 C 0.11 0.60 6.41 -4.04 -0.03 0.57 16 20 N -0.46 -3.44 2.75 -118.57 -0.33 -3.77 16 21 C -0.06 -0.45 11.58 -16.56 -0.19 -0.64 16 22 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 23 N -0.50 -5.57 11.25 -14.67 -0.17 -5.74 16 24 C 0.18 1.59 12.56 -90.37 -1.14 0.46 16 25 H 0.05 0.82 6.47 -51.93 -0.34 0.48 16 26 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 29 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 32 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.37 4.11 9.05 45.56 0.41 4.52 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.35 2.86 8.29 -39.29 -0.33 2.53 16 37 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.20 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -33.20 357.08 -9.63 -42.83 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.34 Total: 2.11 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.57 Total: -4.62 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -1.62 Total: -54.27 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.45 Total: -8.02 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.20 -9.63 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576149310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.664 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds