Wall clock time and date at job start Fri Apr 10 2020 14:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00094 * 2 1 4 4 C 1.50697 * 109.47166 * 66.04620 * 3 2 1 5 5 H 1.08005 * 119.99881 * 0.02562 * 4 3 2 6 6 C 1.37872 * 119.99774 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00573 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99859 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.46670 * 60.00318 * 8 6 4 10 10 H 1.48492 * 109.47012 * 179.97438 * 8 6 4 11 11 H 1.48490 * 109.47254 * 300.00556 * 8 6 4 12 12 C 1.46906 * 110.99840 * 236.04611 * 2 1 3 13 13 C 1.52997 * 109.47042 * 293.95512 * 12 2 1 14 14 H 1.09002 * 109.47268 * 59.99985 * 13 12 2 15 15 O 1.42896 * 109.47074 * 300.00149 * 13 12 2 16 16 C 1.53003 * 109.46971 * 179.97438 * 13 12 2 17 17 N 1.46903 * 109.46899 * 184.99686 * 16 13 12 18 18 C 1.46898 * 110.99673 * 180.02562 * 17 16 13 19 19 C 1.53006 * 109.47006 * 180.02562 * 18 17 16 20 20 N 1.46504 * 109.46883 * 180.02562 * 19 18 17 21 21 C 1.36874 * 126.39943 * 90.00176 * 20 19 18 22 22 C 1.34669 * 106.81918 * 179.97438 * 21 20 19 23 23 N 1.34123 * 108.02125 * 0.02562 * 22 21 20 24 24 C 1.30508 * 109.25485 * 359.72427 * 23 22 21 25 25 H 1.08996 * 109.46999 * 183.95258 * 1 2 3 26 26 H 1.08998 * 109.46919 * 303.95638 * 1 2 3 27 27 H 1.09003 * 109.47119 * 63.95250 * 1 2 3 28 28 H 1.09005 * 109.46679 * 186.05063 * 3 2 1 29 29 H 1.09002 * 109.47239 * 306.04360 * 3 2 1 30 30 H 0.96998 * 120.00468 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47101 * 173.95395 * 12 2 1 32 32 H 1.09002 * 109.47208 * 53.95521 * 12 2 1 33 33 H 0.96703 * 113.99927 * 299.99199 * 15 13 12 34 34 H 1.09003 * 109.46902 * 65.00515 * 16 13 12 35 35 H 1.08993 * 109.47505 * 305.00010 * 16 13 12 36 36 H 1.00894 * 111.00528 * 303.95530 * 17 16 13 37 37 H 1.09001 * 109.47392 * 60.00807 * 18 17 16 38 38 H 1.09001 * 109.47520 * 300.00529 * 18 17 16 39 39 H 1.09001 * 109.47002 * 299.99782 * 19 18 17 40 40 H 1.08993 * 109.46955 * 60.00219 * 19 18 17 41 41 H 1.08001 * 126.59311 * 359.95764 * 21 20 19 42 42 H 1.08000 * 125.99191 * 179.97438 * 22 21 20 43 43 H 1.07997 * 125.65225 * 180.29380 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0747 1.5112 2.0488 6 6 2.0278 3.3491 1.5288 7 7 2.7129 4.0015 0.6154 8 14 1.5828 4.1869 3.1380 9 1 2.1736 3.4293 4.2704 10 1 2.1161 5.5728 3.1385 11 1 0.1056 4.2244 3.2847 12 6 1.9954 -0.7660 -1.1376 13 6 1.6314 -2.2426 -0.9704 14 1 0.5471 -2.3475 -0.9323 15 8 2.2008 -2.7391 0.2425 16 6 2.1791 -3.0403 -2.1556 17 7 1.7286 -4.4351 -2.0571 18 6 2.2371 -5.2330 -3.1808 19 6 1.7476 -6.6762 -3.0441 20 7 2.2553 -7.4722 -4.1644 21 6 3.4362 -8.1632 -4.2005 22 6 3.5071 -8.7506 -5.4102 23 7 2.3999 -8.4267 -6.0944 24 6 1.6428 -7.6655 -5.3523 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4513 -0.9233 28 1 3.0798 1.3443 -0.1083 29 1 1.5612 1.9274 -0.8309 30 1 2.9875 4.9176 0.7773 31 1 3.0797 -0.6611 -1.1757 32 1 1.5611 -0.3873 -2.0629 33 1 3.1652 -2.6772 0.2785 34 1 3.2686 -3.0087 -2.1424 35 1 1.8142 -2.6054 -3.0860 36 1 1.9993 -4.8411 -1.1740 37 1 3.3270 -5.2166 -3.1743 38 1 1.8730 -4.8135 -4.1186 39 1 2.1115 -7.0960 -2.1063 40 1 0.6578 -6.6924 -3.0509 41 1 4.1703 -8.2251 -3.4108 42 1 4.3145 -9.3728 -5.7673 43 1 0.6860 -7.2563 -5.6412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576149310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:31 Heat of formation + Delta-G solvation = -5.643622 kcal Electronic energy + Delta-G solvation = -21364.889567 eV Core-core repulsion = 18059.270383 eV Total energy + Delta-G solvation = -3305.619184 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.92192 -39.66354 -37.75398 -36.66482 -34.62336 -34.59444 -31.52723 -30.39635 -29.54964 -28.68068 -27.08672 -25.16931 -23.60099 -22.71576 -22.25524 -21.82623 -21.63715 -18.59480 -18.33693 -17.63940 -17.20743 -16.76285 -16.53544 -16.17646 -15.90230 -15.61418 -15.39961 -15.00926 -14.97788 -14.60881 -14.54193 -14.10979 -13.82580 -13.69155 -13.62076 -13.19821 -12.98964 -12.76182 -12.55986 -12.54287 -12.37485 -12.32264 -12.01168 -11.62150 -11.43096 -10.96287 -10.82471 -10.62134 -10.53648 -9.54381 -9.43641 -8.97369 -8.21337 -6.31346 1.13855 1.41056 1.44151 1.52141 1.82625 2.23023 2.39813 2.94809 3.11081 3.42015 3.68067 3.73169 3.88882 3.89887 3.98692 4.10115 4.14147 4.24589 4.33843 4.40918 4.49372 4.55849 4.63352 4.67837 4.73165 4.79382 4.80827 4.82593 5.06570 5.13779 5.17012 5.31594 5.35692 5.63801 5.80981 5.84029 6.04371 6.26243 6.31256 6.37159 6.62609 6.84601 6.94793 7.14859 7.38403 8.89308 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.054920 B = 0.002176 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.708351 B =12864.077241 C =12934.052376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.539 5.539 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.022 3.978 13 C 0.129 3.871 14 H 0.098 0.902 15 O -0.559 6.559 16 C 0.041 3.959 17 N -0.681 5.681 18 C 0.052 3.948 19 C 0.111 3.889 20 N -0.455 5.455 21 C -0.053 4.053 22 C -0.060 4.060 23 N -0.541 5.541 24 C 0.175 3.825 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.010 0.990 28 H 0.004 0.996 29 H -0.040 1.040 30 H 0.264 0.736 31 H 0.067 0.933 32 H 0.032 0.968 33 H 0.380 0.620 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.354 0.646 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.199 0.801 42 H 0.178 0.822 43 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 -22.672 -7.452 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.263 5.263 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.193 1.193 12 C -0.107 4.107 13 C 0.069 3.931 14 H 0.116 0.884 15 O -0.364 6.364 16 C -0.090 4.090 17 N -0.314 5.314 18 C -0.078 4.078 19 C -0.011 4.011 20 N -0.138 5.138 21 C -0.186 4.186 22 C -0.207 4.207 23 N -0.260 5.260 24 C -0.108 4.108 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.028 0.972 28 H 0.022 0.978 29 H -0.023 1.023 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.228 0.772 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.174 0.826 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.215 0.785 42 H 0.196 0.804 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.599 -22.895 -7.888 24.268 hybrid contribution 1.504 1.670 0.523 2.307 sum -0.095 -21.225 -7.365 22.467 Atomic orbital electron populations 1.22228 0.87823 1.01182 0.99569 1.61942 1.07991 1.14778 1.41540 1.19393 0.93617 0.84014 0.94868 1.21443 1.34860 0.97497 1.02413 0.92006 1.25927 0.95042 0.98083 1.00755 1.70069 1.39342 1.11910 1.36205 0.85428 0.78824 0.77138 0.79188 1.19314 1.20837 1.19272 1.22840 1.00217 0.95553 0.92081 1.21762 0.98768 0.88820 0.83709 0.88413 1.86564 1.26177 1.84632 1.39069 1.22486 0.98109 0.89167 0.99196 1.60241 1.63550 1.01672 1.05976 1.22173 0.97542 0.92605 0.95462 1.21897 1.01974 0.89357 0.87903 1.45667 1.16586 1.37125 1.14403 1.23189 0.91804 1.01498 1.02109 1.22675 0.98811 1.06202 0.93021 1.70263 1.05928 1.16649 1.33151 1.25533 1.01491 1.01019 0.82726 0.90358 0.92730 0.97158 0.97804 1.02254 0.92683 0.91450 0.95029 0.77245 0.93926 0.89999 0.82638 0.94821 0.90928 0.87404 0.86696 0.78455 0.80443 0.75718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 9.14 127.69 1.17 2.71 16 2 N -0.54 -22.77 4.62 -927.03 -4.28 -27.05 16 3 C 0.21 11.01 4.72 85.56 0.40 11.41 16 4 C -0.52 -29.78 8.46 25.60 0.22 -29.57 16 5 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 6 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 7 N -0.93 -56.14 13.29 21.44 0.28 -55.86 16 8 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 C 0.02 0.72 4.62 86.30 0.40 1.12 16 13 C 0.13 3.15 3.07 30.59 0.09 3.24 16 14 H 0.10 2.55 6.55 -2.39 -0.02 2.53 16 15 O -0.56 -14.36 12.72 -148.98 -1.90 -16.26 16 16 C 0.04 0.72 5.36 86.30 0.46 1.18 16 17 N -0.68 -9.72 6.50 -513.87 -3.34 -13.06 16 18 C 0.05 0.60 6.01 86.31 0.52 1.12 16 19 C 0.11 0.95 6.41 86.38 0.55 1.50 16 20 N -0.46 -5.95 2.75 -529.06 -1.46 -7.40 16 21 C -0.05 -0.72 11.58 83.09 0.96 0.24 16 22 C -0.06 -1.09 11.87 83.52 0.99 -0.10 16 23 N -0.54 -11.94 11.25 -200.31 -2.25 -14.20 16 24 C 0.17 2.84 12.56 180.26 2.26 5.10 16 25 H 0.08 2.52 6.47 -2.39 -0.02 2.50 16 26 H 0.05 2.29 6.76 -2.39 -0.02 2.28 16 27 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.00 0.22 7.93 -2.38 -0.02 0.20 16 29 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 30 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.07 2.18 7.93 -2.39 -0.02 2.16 16 32 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 33 H 0.38 7.75 9.05 -74.06 -0.67 7.08 16 34 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.35 4.73 8.29 -89.70 -0.74 3.98 16 37 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.23 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -71.95 357.08 -2.84 -74.79 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -0.41 Total: 14.36 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 8.50 Total: -1.58 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -11.05 Total: -117.57 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -1.90 Total: -16.26 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -71.95 -2.84 -74.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576149310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.145 kcal (2) G-P(sol) polarization free energy of solvation -71.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds