Wall clock time and date at job start Fri Apr 10 2020 14:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 111.00386 * 2 1 4 4 C 1.50694 * 109.47359 * 293.95899 * 3 2 1 5 5 H 1.08000 * 119.99961 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00369 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00439 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99437 * 359.97438 * 6 4 3 9 9 H 1.48495 * 109.47281 * 90.00331 * 8 6 4 10 10 H 1.48502 * 109.46967 * 210.00131 * 8 6 4 11 11 H 1.48494 * 109.47306 * 329.99460 * 8 6 4 12 12 C 1.46904 * 110.99700 * 123.95997 * 2 1 3 13 13 C 1.53004 * 109.46905 * 164.00886 * 12 2 1 14 14 H 1.09006 * 109.47087 * 58.50278 * 13 12 2 15 15 O 1.42905 * 109.46894 * 298.50624 * 13 12 2 16 16 C 1.52995 * 109.46867 * 178.50685 * 13 12 2 17 17 N 1.46903 * 109.47129 * 184.99960 * 16 13 12 18 18 C 1.46894 * 111.00266 * 180.02562 * 17 16 13 19 19 C 1.50700 * 109.47141 * 179.97438 * 18 17 16 20 20 C 1.39864 * 126.04304 * 269.68854 * 19 18 17 21 21 N 1.30832 * 108.20505 * 179.81777 * 20 19 18 22 22 N 1.40086 * 108.20709 * 0.44058 * 21 20 19 23 23 C 1.46501 * 126.03863 * 179.69368 * 22 21 20 24 24 C 1.34944 * 107.92044 * 359.71925 * 22 21 20 25 25 H 1.08992 * 109.46958 * 301.52960 * 1 2 3 26 26 H 1.09005 * 109.46886 * 61.53035 * 1 2 3 27 27 H 1.08996 * 109.47065 * 181.52739 * 1 2 3 28 28 H 1.09003 * 109.46829 * 53.95207 * 3 2 1 29 29 H 1.08997 * 109.47129 * 173.95035 * 3 2 1 30 30 H 0.97000 * 120.00366 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47427 * 44.00956 * 12 2 1 32 32 H 1.08996 * 109.46790 * 284.00269 * 12 2 1 33 33 H 0.96696 * 113.99783 * 300.00003 * 15 13 12 34 34 H 1.09003 * 109.47306 * 64.99983 * 16 13 12 35 35 H 1.08999 * 109.46994 * 304.99578 * 16 13 12 36 36 H 1.00902 * 110.99884 * 303.95616 * 17 16 13 37 37 H 1.09004 * 109.46955 * 299.99817 * 18 17 16 38 38 H 1.09002 * 109.47150 * 60.00150 * 18 17 16 39 39 H 1.08003 * 125.89560 * 0.02562 * 20 19 18 40 40 H 1.08996 * 109.47141 * 270.02398 * 23 22 21 41 41 H 1.08997 * 109.46962 * 30.03149 * 23 22 21 42 42 H 1.09001 * 109.46740 * 150.02898 * 23 22 21 43 43 H 1.08006 * 126.12423 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6370 2.0471 -1.2983 5 1 1.0746 1.5113 -2.0487 6 6 2.0269 3.3495 -1.5284 7 7 1.7145 3.9391 -2.6616 8 14 2.9990 4.2764 -0.2302 9 1 4.4516 4.0641 -0.4540 10 1 2.6908 5.7262 -0.3223 11 1 2.6274 3.7761 1.1176 12 6 1.9954 -0.7661 1.1376 13 6 3.4728 -1.0841 0.8983 14 1 4.0282 -0.1551 0.7696 15 8 3.6033 -1.8840 -0.2787 16 6 4.0307 -1.8498 2.0997 17 7 5.4753 -2.0505 1.9246 18 6 6.0465 -2.7846 3.0615 19 6 7.5263 -2.9716 2.8464 20 6 8.1340 -4.0549 2.2035 21 7 9.4277 -3.8598 2.2084 22 7 9.6853 -2.6492 2.8645 23 6 11.0057 -2.0582 3.0960 24 6 8.5024 -2.1239 3.2462 25 1 -0.3633 0.5374 0.8759 26 1 -0.3633 0.4899 -0.9034 27 1 -0.3633 -1.0273 0.0274 28 1 1.5612 1.9273 0.8309 29 1 3.0798 1.3442 0.1083 30 1 1.9891 4.8552 -2.8236 31 1 1.4356 -1.6958 1.2398 32 1 1.8934 -0.1783 2.0497 33 1 3.1332 -2.7279 -0.2348 34 1 3.5358 -2.8181 2.1752 35 1 3.8511 -1.2780 3.0101 36 1 5.6720 -2.5221 1.0545 37 1 5.8809 -2.2197 3.9789 38 1 5.5656 -3.7594 3.1431 39 1 7.6233 -4.9041 1.7739 40 1 11.4000 -2.4115 4.0487 41 1 11.6809 -2.3513 2.2921 42 1 10.9184 -0.9720 3.1193 43 1 8.3601 -1.1937 3.7763 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584226816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:47 Heat of formation + Delta-G solvation = 41.577873 kcal Electronic energy + Delta-G solvation = -21802.428957 eV Core-core repulsion = 18498.857450 eV Total energy + Delta-G solvation = -3303.571507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35874 -38.30313 -36.18185 -35.07811 -33.34264 -32.38956 -31.13163 -29.52873 -28.01764 -27.50312 -25.73573 -24.03748 -22.82462 -21.51720 -21.27976 -20.39922 -19.89530 -17.14458 -16.89675 -16.18820 -15.98969 -15.71050 -15.06390 -14.76191 -14.63694 -14.47227 -14.18478 -13.83948 -13.38182 -13.33532 -13.12197 -12.89990 -12.61048 -12.47171 -12.30437 -12.22587 -11.75603 -11.50060 -11.28060 -11.04981 -10.75051 -10.70765 -10.46095 -10.12878 -9.85606 -9.62427 -9.60623 -9.17448 -8.70505 -8.50589 -8.33733 -7.29950 -5.99279 -3.95671 1.69895 2.31071 2.57187 3.33014 3.39504 3.41045 4.17669 4.28845 4.47157 4.64131 4.72094 4.81945 4.86880 4.90779 5.08076 5.09224 5.17254 5.27888 5.30369 5.36559 5.48797 5.55930 5.60284 5.67044 5.75553 5.95741 5.98280 6.05826 6.27166 6.42336 6.45893 6.69791 6.78363 6.89363 6.99790 7.03534 7.41407 7.49452 7.65492 7.91499 8.07830 8.11740 8.72192 9.09942 9.62655 11.14102 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.003368 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.063508 B = 8312.032425 C = 9368.122767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.522 5.522 3 C 0.161 3.839 4 C -0.505 4.505 5 H 0.080 0.920 6 C 0.067 3.933 7 N -0.902 5.902 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.269 1.269 12 C 0.024 3.976 13 C 0.113 3.887 14 H 0.108 0.892 15 O -0.540 6.540 16 C 0.029 3.971 17 N -0.682 5.682 18 C 0.138 3.862 19 C -0.236 4.236 20 C 0.054 3.946 21 N -0.301 5.301 22 N -0.379 5.379 23 C 0.102 3.898 24 C 0.076 3.924 25 H 0.010 0.990 26 H 0.079 0.921 27 H 0.045 0.955 28 H -0.014 1.014 29 H 0.026 0.974 30 H 0.263 0.737 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.361 0.639 34 H 0.030 0.970 35 H 0.077 0.923 36 H 0.350 0.650 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.180 0.820 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.001 -14.841 15.861 24.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.245 5.245 3 C 0.035 3.965 4 C -0.543 4.543 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.194 1.194 12 C -0.106 4.106 13 C 0.053 3.947 14 H 0.126 0.874 15 O -0.342 6.342 16 C -0.101 4.101 17 N -0.314 5.314 18 C 0.008 3.992 19 C -0.248 4.248 20 C -0.132 4.132 21 N -0.122 5.122 22 N -0.161 5.161 23 C -0.039 4.039 24 C -0.071 4.071 25 H 0.029 0.971 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.003 0.997 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.206 0.794 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.169 0.831 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.197 0.803 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 14.002 -14.147 15.066 24.964 hybrid contribution -1.180 0.122 1.728 2.096 sum 12.823 -14.025 16.794 25.361 Atomic orbital electron populations 1.22229 0.88215 0.99200 1.01281 1.61857 1.06934 1.16482 1.39260 1.20232 0.95094 0.84018 0.97166 1.21024 1.35367 0.97044 1.00849 0.90163 1.24896 0.95829 0.97396 0.95272 1.69891 1.47112 1.13254 1.23867 0.86884 0.81085 0.79208 0.82738 1.20041 1.21270 1.19362 1.22730 0.96029 0.98415 0.93450 1.21992 0.94515 0.94682 0.83469 0.87409 1.86715 1.75164 1.33346 1.39024 1.22683 0.88269 0.99033 1.00101 1.60435 1.11883 1.53839 1.05290 1.20101 0.88524 0.96049 0.94476 1.19952 0.95975 0.97617 1.11219 1.23792 0.91050 0.99292 0.99094 1.77339 1.17194 0.99810 1.17879 1.48469 1.06366 1.17065 1.44231 1.21849 0.80811 0.98374 1.02908 1.22356 0.84969 0.99411 1.00386 0.97118 0.90234 0.93599 0.99671 0.95607 0.92740 0.91824 0.95089 0.79427 0.95232 0.90498 0.83102 0.90806 0.94759 0.80271 0.90879 0.89318 0.89379 0.80891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.33 60.07 0.56 1.31 16 2 N -0.52 -11.02 4.60 -244.37 -1.12 -12.14 16 3 C 0.16 4.00 3.64 -4.98 -0.02 3.98 16 4 C -0.50 -14.72 9.09 -34.44 -0.31 -15.03 16 5 H 0.08 2.55 7.34 -52.49 -0.39 2.16 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 8 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 12 C 0.02 0.38 4.63 -3.82 -0.02 0.37 16 13 C 0.11 1.75 3.23 -26.73 -0.09 1.67 16 14 H 0.11 2.03 6.55 -51.93 -0.34 1.69 16 15 O -0.54 -8.71 12.75 -35.23 -0.45 -9.16 16 16 C 0.03 0.34 5.36 -3.82 -0.02 0.32 16 17 N -0.68 -8.09 6.49 -115.06 -0.75 -8.83 16 18 C 0.14 1.34 6.17 -4.98 -0.03 1.31 16 19 C -0.24 -2.46 5.61 -105.05 -0.59 -3.05 16 20 C 0.05 0.59 11.96 -17.37 -0.21 0.38 16 21 N -0.30 -3.68 12.58 30.62 0.39 -3.29 16 22 N -0.38 -3.86 4.01 -68.16 -0.27 -4.13 16 23 C 0.10 0.61 11.47 59.85 0.69 1.29 16 24 C 0.08 0.74 11.40 -17.22 -0.20 0.55 16 25 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 26 H 0.08 1.71 6.90 -51.93 -0.36 1.35 16 27 H 0.05 0.73 7.97 -51.93 -0.41 0.32 16 28 H -0.01 -0.36 7.17 -51.93 -0.37 -0.73 16 29 H 0.03 0.65 5.81 -51.93 -0.30 0.35 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 32 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 33 H 0.36 4.32 9.04 45.56 0.41 4.73 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.35 4.35 8.28 -39.29 -0.33 4.03 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -35.40 354.51 -7.40 -42.80 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.31 Total: 4.56 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -0.33 Total: -5.01 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.99 Total: -55.83 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.45 Total: -9.16 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.40 -7.40 -42.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584226816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.373 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds