Wall clock time and date at job start Fri Apr 10 2020 14:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 111.00386 * 2 1 4 4 C 1.50694 * 109.47359 * 293.95899 * 3 2 1 5 5 H 1.08000 * 119.99961 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00369 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00439 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99437 * 359.97438 * 6 4 3 9 9 H 1.48495 * 109.47281 * 90.00331 * 8 6 4 10 10 H 1.48502 * 109.46967 * 210.00131 * 8 6 4 11 11 H 1.48494 * 109.47306 * 329.99460 * 8 6 4 12 12 C 1.46904 * 110.99700 * 123.95997 * 2 1 3 13 13 C 1.53004 * 109.46905 * 164.00886 * 12 2 1 14 14 H 1.09006 * 109.47087 * 58.50278 * 13 12 2 15 15 O 1.42905 * 109.46894 * 298.50624 * 13 12 2 16 16 C 1.52995 * 109.46867 * 178.50685 * 13 12 2 17 17 N 1.46903 * 109.47129 * 184.99960 * 16 13 12 18 18 C 1.46894 * 111.00266 * 180.02562 * 17 16 13 19 19 C 1.50700 * 109.47141 * 179.97438 * 18 17 16 20 20 C 1.39864 * 126.04304 * 269.68854 * 19 18 17 21 21 N 1.30832 * 108.20505 * 179.81777 * 20 19 18 22 22 N 1.40086 * 108.20709 * 0.44058 * 21 20 19 23 23 C 1.46501 * 126.03863 * 179.69368 * 22 21 20 24 24 C 1.34944 * 107.92044 * 359.71925 * 22 21 20 25 25 H 1.08992 * 109.46958 * 301.52960 * 1 2 3 26 26 H 1.09005 * 109.46886 * 61.53035 * 1 2 3 27 27 H 1.08996 * 109.47065 * 181.52739 * 1 2 3 28 28 H 1.09003 * 109.46829 * 53.95207 * 3 2 1 29 29 H 1.08997 * 109.47129 * 173.95035 * 3 2 1 30 30 H 0.97000 * 120.00366 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47427 * 44.00956 * 12 2 1 32 32 H 1.08996 * 109.46790 * 284.00269 * 12 2 1 33 33 H 0.96696 * 113.99783 * 300.00003 * 15 13 12 34 34 H 1.09003 * 109.47306 * 64.99983 * 16 13 12 35 35 H 1.08999 * 109.46994 * 304.99578 * 16 13 12 36 36 H 1.00902 * 110.99884 * 303.95616 * 17 16 13 37 37 H 1.09004 * 109.46955 * 299.99817 * 18 17 16 38 38 H 1.09002 * 109.47150 * 60.00150 * 18 17 16 39 39 H 1.08003 * 125.89560 * 0.02562 * 20 19 18 40 40 H 1.08996 * 109.47141 * 270.02398 * 23 22 21 41 41 H 1.08997 * 109.46962 * 30.03149 * 23 22 21 42 42 H 1.09001 * 109.46740 * 150.02898 * 23 22 21 43 43 H 1.08006 * 126.12423 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6370 2.0471 -1.2983 5 1 1.0746 1.5113 -2.0487 6 6 2.0269 3.3495 -1.5284 7 7 1.7145 3.9391 -2.6616 8 14 2.9990 4.2764 -0.2302 9 1 4.4516 4.0641 -0.4540 10 1 2.6908 5.7262 -0.3223 11 1 2.6274 3.7761 1.1176 12 6 1.9954 -0.7661 1.1376 13 6 3.4728 -1.0841 0.8983 14 1 4.0282 -0.1551 0.7696 15 8 3.6033 -1.8840 -0.2787 16 6 4.0307 -1.8498 2.0997 17 7 5.4753 -2.0505 1.9246 18 6 6.0465 -2.7846 3.0615 19 6 7.5263 -2.9716 2.8464 20 6 8.1340 -4.0549 2.2035 21 7 9.4277 -3.8598 2.2084 22 7 9.6853 -2.6492 2.8645 23 6 11.0057 -2.0582 3.0960 24 6 8.5024 -2.1239 3.2462 25 1 -0.3633 0.5374 0.8759 26 1 -0.3633 0.4899 -0.9034 27 1 -0.3633 -1.0273 0.0274 28 1 1.5612 1.9273 0.8309 29 1 3.0798 1.3442 0.1083 30 1 1.9891 4.8552 -2.8236 31 1 1.4356 -1.6958 1.2398 32 1 1.8934 -0.1783 2.0497 33 1 3.1332 -2.7279 -0.2348 34 1 3.5358 -2.8181 2.1752 35 1 3.8511 -1.2780 3.0101 36 1 5.6720 -2.5221 1.0545 37 1 5.8809 -2.2197 3.9789 38 1 5.5656 -3.7594 3.1431 39 1 7.6233 -4.9041 1.7739 40 1 11.4000 -2.4115 4.0487 41 1 11.6809 -2.3513 2.2921 42 1 10.9184 -0.9720 3.1193 43 1 8.3601 -1.1937 3.7763 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584226816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:46 Heat of formation + Delta-G solvation = 11.147170 kcal Electronic energy + Delta-G solvation = -21803.748531 eV Core-core repulsion = 18498.857450 eV Total energy + Delta-G solvation = -3304.891081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07798 -39.56136 -37.51096 -36.16738 -34.57903 -34.02768 -32.05626 -30.71036 -29.84612 -28.31749 -26.82135 -25.35285 -24.17504 -22.69672 -21.99446 -21.61031 -21.07812 -19.04648 -17.86955 -17.28419 -17.19379 -16.48977 -16.37630 -16.17335 -15.88529 -15.51688 -15.33851 -15.11793 -14.71160 -14.47534 -14.27502 -13.97877 -13.83694 -13.43980 -13.30194 -13.20536 -13.00112 -12.94788 -12.57486 -12.52877 -12.37539 -12.21462 -11.85213 -11.61627 -11.48720 -11.41318 -10.76454 -10.73129 -10.35509 -9.46249 -9.13804 -8.92741 -8.27259 -6.29803 0.97686 1.33778 1.36034 1.45824 1.70858 1.81523 2.34924 3.04486 3.09861 3.56974 3.68042 3.77550 4.01602 4.08295 4.21291 4.31805 4.36383 4.39051 4.43310 4.51037 4.54194 4.62524 4.65464 4.68262 4.73902 4.83414 4.86634 4.92176 4.93182 5.03596 5.21348 5.25493 5.28081 5.57553 5.70963 5.99599 6.14533 6.21150 6.40983 6.52359 6.68865 6.75049 6.76466 7.10213 7.33368 8.89752 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.017572 B = 0.003368 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.063508 B = 8312.032425 C = 9368.122767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.543 5.543 3 C 0.174 3.826 4 C -0.514 4.514 5 H 0.035 0.965 6 C 0.005 3.995 7 N -0.950 5.950 8 Si 0.946 3.054 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.249 1.249 12 C 0.025 3.975 13 C 0.118 3.882 14 H 0.069 0.931 15 O -0.563 6.563 16 C 0.043 3.957 17 N -0.697 5.697 18 C 0.145 3.855 19 C -0.251 4.251 20 C 0.045 3.955 21 N -0.340 5.340 22 N -0.385 5.385 23 C 0.093 3.907 24 C 0.072 3.928 25 H 0.018 0.982 26 H 0.043 0.957 27 H 0.083 0.917 28 H -0.014 1.014 29 H 0.024 0.976 30 H 0.266 0.734 31 H 0.097 0.903 32 H 0.040 0.960 33 H 0.379 0.621 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.344 0.656 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.196 0.804 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.641 -15.543 18.745 27.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.267 5.267 3 C 0.046 3.954 4 C -0.552 4.552 5 H 0.054 0.946 6 C -0.192 4.192 7 N -0.591 5.591 8 Si 0.770 3.230 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.173 1.173 12 C -0.104 4.104 13 C 0.058 3.942 14 H 0.087 0.913 15 O -0.369 6.369 16 C -0.087 4.087 17 N -0.329 5.329 18 C 0.016 3.984 19 C -0.263 4.263 20 C -0.140 4.140 21 N -0.162 5.162 22 N -0.167 5.167 23 C -0.047 4.047 24 C -0.076 4.076 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.004 0.996 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.058 0.942 33 H 0.227 0.773 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.162 0.838 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.213 0.787 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.127 0.873 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 14.639 -14.888 17.971 27.549 hybrid contribution -1.403 0.261 0.753 1.613 sum 13.237 -14.627 18.724 27.199 Atomic orbital electron populations 1.22190 0.87353 1.01241 0.99793 1.61722 1.07953 1.14569 1.42470 1.19934 0.94984 0.86037 0.94406 1.21290 1.34636 0.97390 1.01899 0.94628 1.25869 0.97055 0.98514 0.97744 1.70052 1.48806 1.13910 1.26332 0.85728 0.79344 0.77720 0.80255 1.19293 1.20478 1.17284 1.22852 0.96739 0.99045 0.91753 1.21838 0.93658 0.93885 0.84807 0.91298 1.86665 1.75786 1.34590 1.39863 1.22489 0.88306 0.99683 0.98191 1.60427 1.12086 1.54634 1.05740 1.20085 0.87974 0.96534 0.93799 1.20146 0.96588 0.97782 1.11735 1.24151 0.90906 1.00028 0.98942 1.77270 1.18094 1.01380 1.19427 1.48815 1.07708 1.16545 1.43628 1.22152 0.79331 0.99567 1.03643 1.22825 0.84848 0.99993 0.99952 0.96358 0.93839 0.89853 0.99645 0.95766 0.92476 0.88427 0.94190 0.77319 0.92754 0.89641 0.83772 0.89965 0.93540 0.78743 0.89320 0.89465 0.87265 0.78601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.33 127.69 1.19 2.78 16 2 N -0.54 -22.39 4.60 -927.06 -4.27 -26.65 16 3 C 0.17 8.56 3.64 85.56 0.31 8.87 16 4 C -0.51 -30.84 9.09 25.60 0.23 -30.61 16 5 H 0.04 2.38 7.34 -2.91 -0.02 2.36 16 6 C 0.01 0.30 5.47 84.66 0.46 0.77 16 7 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 8 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 12 C 0.02 0.74 4.63 86.30 0.40 1.14 16 13 C 0.12 3.42 3.23 30.59 0.10 3.52 16 14 H 0.07 2.55 6.55 -2.38 -0.02 2.53 16 15 O -0.56 -17.38 12.75 -148.98 -1.90 -19.28 16 16 C 0.04 0.87 5.36 86.30 0.46 1.34 16 17 N -0.70 -14.94 6.49 -517.94 -3.36 -18.30 16 18 C 0.15 2.44 6.17 85.56 0.53 2.97 16 19 C -0.25 -4.82 5.61 -20.14 -0.11 -4.93 16 20 C 0.05 0.94 11.96 85.24 1.02 1.96 16 21 N -0.34 -8.11 12.58 -57.03 -0.72 -8.83 16 22 N -0.38 -7.35 4.01 -369.57 -1.48 -8.84 16 23 C 0.09 0.96 11.47 127.77 1.47 2.43 16 24 C 0.07 1.28 11.40 83.54 0.95 2.23 16 25 H 0.02 0.64 8.13 -2.39 -0.02 0.62 16 26 H 0.04 1.91 6.90 -2.38 -0.02 1.89 16 27 H 0.08 2.46 7.97 -2.39 -0.02 2.44 16 28 H -0.01 -0.68 7.17 -2.39 -0.02 -0.70 16 29 H 0.02 1.21 5.81 -2.39 -0.01 1.20 16 30 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 31 H 0.10 2.25 7.88 -2.39 -0.02 2.23 16 32 H 0.04 1.14 8.05 -2.39 -0.02 1.12 16 33 H 0.38 8.20 9.04 -74.06 -0.67 7.53 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.34 8.02 8.28 -89.69 -0.74 7.28 16 37 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.20 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.20 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -79.05 354.51 -3.00 -82.05 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -0.46 Total: 20.99 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 7.01 Total: -7.54 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -9.53 Total: -123.44 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.90 Total: -19.28 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -79.05 -3.00 -82.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584226816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.193 kcal (2) G-P(sol) polarization free energy of solvation -79.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds