Wall clock time and date at job start Fri Apr 10 2020 14:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.46846 * 110.99738 * 66.05101 * 4 3 2 6 6 C 1.53041 * 109.52003 * 174.15981 * 5 4 3 7 7 C 1.53120 * 109.28215 * 59.17728 * 6 5 4 8 8 C 1.53120 * 109.15835 * 302.34563 * 7 6 5 9 9 H 1.08995 * 109.50232 * 297.70964 * 8 7 6 10 10 C 1.50693 * 109.50193 * 177.63153 * 8 7 6 11 11 O 1.21281 * 120.00446 * 240.00171 * 10 8 7 12 12 N 1.34780 * 119.99980 * 59.99760 * 10 8 7 13 13 C 1.46504 * 120.00171 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.46883 * 35.00314 * 13 12 10 15 15 C 1.50698 * 109.46976 * 155.00360 * 13 12 10 16 16 H 1.08003 * 119.99982 * 0.02562 * 15 13 12 17 17 C 1.37881 * 119.99666 * 179.97438 * 15 13 12 18 18 N 1.31510 * 120.00224 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99617 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47355 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46706 * 120.00323 * 19 17 15 22 22 H 1.48498 * 109.47276 * 240.00076 * 19 17 15 23 23 C 1.52997 * 109.47310 * 275.00530 * 13 12 10 24 24 C 1.53001 * 109.47168 * 64.99710 * 23 13 12 25 25 C 1.46839 * 111.00234 * 301.83737 * 4 3 2 26 26 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 30 30 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 31 31 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 32 32 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 33 33 H 1.09002 * 109.46476 * 294.17097 * 5 4 3 34 34 H 1.08994 * 109.46671 * 54.14251 * 5 4 3 35 35 H 1.09001 * 109.50321 * 179.12207 * 6 5 4 36 36 H 1.08999 * 109.50410 * 299.19360 * 6 5 4 37 37 H 1.08994 * 109.51809 * 62.24931 * 7 6 5 38 38 H 1.09001 * 109.52317 * 182.37652 * 7 6 5 39 39 H 0.97000 * 119.99918 * 0.02562 * 12 10 8 40 40 H 0.96995 * 120.00215 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.47542 * 185.00137 * 23 13 12 42 42 H 1.09005 * 109.46875 * 304.99981 * 23 13 12 43 43 H 1.08998 * 109.47252 * 299.99825 * 24 23 13 44 44 H 1.08996 * 109.46787 * 60.00478 * 24 23 13 45 45 H 1.08999 * 109.47074 * 179.97438 * 24 23 13 46 46 H 1.08998 * 109.46586 * 305.85726 * 25 4 3 47 47 H 1.09001 * 109.46136 * 65.82255 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0346 0.8862 -1.2538 6 6 5.5575 1.0352 -1.2804 7 6 6.1588 0.2975 -0.0809 8 6 5.5586 0.8632 1.2092 9 1 5.8219 1.9169 1.3016 10 6 6.1015 0.1035 2.3920 11 8 5.3449 -0.4925 3.1291 12 7 7.4279 0.0861 2.6306 13 6 7.9557 -0.6521 3.7808 14 1 7.3589 -1.5500 3.9411 15 6 9.3869 -1.0412 3.5142 16 1 9.8566 -0.7657 2.5814 17 6 10.0971 -1.7478 4.4615 18 7 9.5253 -2.0828 5.5974 19 14 11.8711 -2.2307 4.1306 20 1 12.2762 -1.7385 2.7894 21 1 12.7494 -1.6274 5.1650 22 1 11.9981 -3.7096 4.1748 23 6 7.8913 0.2323 5.0276 24 6 6.4292 0.5247 5.3706 25 6 4.0357 0.7192 1.1636 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6765 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.7718 -0.1696 -1.3210 34 1 3.6024 1.4223 -2.0987 35 1 5.9489 0.6082 -2.2038 36 1 5.8207 2.0916 -1.2280 37 1 5.9286 -0.7653 -0.1543 38 1 7.2399 0.4364 -0.0724 39 1 8.0330 0.5629 2.0413 40 1 10.0248 -2.5802 6.2636 41 1 8.3646 -0.2829 5.8634 42 1 8.4139 1.1694 4.8356 43 1 5.9560 1.0401 4.5348 44 1 5.9067 -0.4124 5.5625 45 1 6.3834 1.1544 6.2591 46 1 3.6043 1.1340 2.0746 47 1 3.7729 -0.3358 1.0852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887268533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:13 Heat of formation + Delta-G solvation = -62.111891 kcal Electronic energy + Delta-G solvation = -23489.938080 eV Core-core repulsion = 20285.410591 eV Total energy + Delta-G solvation = -3204.527489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.93019 -38.30711 -35.19011 -34.79727 -32.43200 -31.77209 -31.11334 -30.40348 -27.01762 -26.27822 -24.04785 -23.40172 -22.75380 -21.69047 -20.25558 -19.34639 -19.06514 -17.21963 -15.98832 -15.74058 -15.24573 -15.19196 -14.79767 -14.55252 -14.28138 -14.13047 -13.86700 -13.36043 -13.22634 -12.70947 -12.63369 -12.48912 -11.97807 -11.89751 -11.69377 -11.52088 -11.46300 -11.40675 -11.24597 -10.95487 -10.89820 -10.81212 -10.61987 -10.52937 -10.30017 -10.27616 -10.12756 -9.60078 -9.01802 -8.82854 -8.47969 -8.26411 -7.76287 -6.11145 -4.20280 3.23769 3.31740 3.34210 3.46997 3.77058 4.25703 4.44744 4.71817 4.79270 4.88814 4.92977 5.02273 5.13443 5.20223 5.20302 5.35557 5.44292 5.51383 5.57737 5.63712 5.68099 5.78209 5.80834 5.87326 5.92284 5.94794 6.05059 6.08691 6.16124 6.28714 6.39230 6.42352 6.48970 6.69308 7.06030 7.06642 7.08773 7.22875 7.40376 7.51051 7.64568 7.76646 7.93140 8.20788 8.72653 8.80658 9.20109 9.47595 10.94168 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025395 B = 0.003890 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.296279 B = 7197.033854 C = 7778.393407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.168 4.168 3 C 0.058 3.942 4 N -0.539 5.539 5 C 0.052 3.948 6 C -0.115 4.115 7 C -0.112 4.112 8 C -0.106 4.106 9 H 0.096 0.904 10 C 0.506 3.494 11 O -0.552 6.552 12 N -0.707 5.707 13 C 0.270 3.730 14 H 0.048 0.952 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.127 4.127 24 C -0.136 4.136 25 C 0.077 3.923 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.387 0.613 40 H 0.263 0.737 41 H 0.098 0.902 42 H 0.030 0.970 43 H 0.039 0.961 44 H 0.049 0.951 45 H 0.022 0.978 46 H 0.079 0.921 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.367 7.025 -12.832 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.207 4.207 3 C -0.071 4.071 4 N -0.262 5.262 5 C -0.076 4.076 6 C -0.152 4.152 7 C -0.150 4.150 8 C -0.128 4.128 9 H 0.115 0.885 10 C 0.291 3.709 11 O -0.431 6.431 12 N -0.354 5.354 13 C 0.168 3.832 14 H 0.066 0.934 15 C -0.571 4.571 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.166 4.166 24 C -0.194 4.194 25 C -0.051 4.051 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.220 0.780 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.098 0.902 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.675 6.977 -12.070 18.185 hybrid contribution 1.026 -0.904 -0.398 1.424 sum -10.650 6.072 -12.468 17.486 Atomic orbital electron populations 1.21672 0.95512 1.01597 1.01653 1.22237 0.96635 0.99189 1.02599 1.22219 0.86941 0.95312 1.02588 1.62131 1.06921 1.54606 1.02545 1.22119 0.95616 0.97790 0.92092 1.21584 0.94374 1.01392 0.97886 1.21554 1.00358 0.99976 0.93092 1.21334 0.95981 1.01225 0.94239 0.88543 1.20258 0.83416 0.81583 0.85674 1.90656 1.57675 1.45483 1.49299 1.46481 1.05958 1.52205 1.30797 1.18761 0.93519 0.90352 0.80549 0.93440 1.21281 0.96582 1.36326 1.02895 0.92097 1.24890 0.98511 0.95447 0.94877 1.69903 1.36749 1.38368 1.06951 0.86421 0.84288 0.78267 0.78285 1.19752 1.20898 1.20923 1.21930 0.93885 0.98678 1.02138 1.21831 0.98872 1.00252 0.98420 1.21800 0.93198 0.97103 0.92951 0.92901 0.92895 0.92618 0.92054 0.91214 0.90960 0.90642 0.94692 0.91068 0.91417 0.90992 0.91750 0.90969 0.78049 0.92662 0.88371 0.95089 0.94245 0.93231 0.95936 0.90223 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.17 -1.68 5.23 -26.73 -0.14 -1.82 16 3 C 0.06 0.58 5.36 -3.82 -0.02 0.56 16 4 N -0.54 -6.37 4.86 -234.67 -1.14 -7.51 16 5 C 0.05 0.54 5.05 -3.83 -0.02 0.52 16 6 C -0.11 -1.19 6.09 -26.65 -0.16 -1.35 16 7 C -0.11 -1.43 5.16 -26.61 -0.14 -1.57 16 8 C -0.11 -1.57 2.69 -91.69 -0.25 -1.81 16 9 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 10 C 0.51 9.86 5.73 -10.99 -0.06 9.80 16 11 O -0.55 -12.68 13.13 5.56 0.07 -12.61 16 12 N -0.71 -14.50 4.92 -54.93 -0.27 -14.77 16 13 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 14 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 15 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 17 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 18 N -0.88 -24.75 11.29 55.43 0.63 -24.12 16 19 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 24 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 25 C 0.08 1.10 3.41 -3.84 -0.01 1.09 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.62 6.68 -51.93 -0.35 0.27 16 30 H 0.07 0.83 6.51 -51.93 -0.34 0.50 16 31 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.38 6.75 -51.93 -0.35 0.03 16 34 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.89 7.65 -51.93 -0.40 0.49 16 39 H 0.39 6.99 8.01 -40.82 -0.33 6.66 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 44 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 47 H 0.05 0.71 6.55 -51.93 -0.34 0.37 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -29.05 354.77 -9.73 -38.78 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.53 Total: 6.80 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.81 Total: -7.49 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.78 Total: -46.40 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.07 Total: -12.61 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.05 -9.73 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887268533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.333 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds