Wall clock time and date at job start Fri Apr 10 2020 14:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.46846 * 110.99738 * 66.05101 * 4 3 2 6 6 C 1.53041 * 109.52003 * 174.15981 * 5 4 3 7 7 C 1.53120 * 109.28215 * 59.17728 * 6 5 4 8 8 C 1.53120 * 109.15835 * 302.34563 * 7 6 5 9 9 H 1.08995 * 109.50232 * 297.70964 * 8 7 6 10 10 C 1.50693 * 109.50193 * 177.63153 * 8 7 6 11 11 O 1.21281 * 120.00446 * 240.00171 * 10 8 7 12 12 N 1.34780 * 119.99980 * 59.99760 * 10 8 7 13 13 C 1.46504 * 120.00171 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.46883 * 35.00314 * 13 12 10 15 15 C 1.50698 * 109.46976 * 155.00360 * 13 12 10 16 16 H 1.08003 * 119.99982 * 0.02562 * 15 13 12 17 17 C 1.37881 * 119.99666 * 179.97438 * 15 13 12 18 18 N 1.31510 * 120.00224 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99617 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47355 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46706 * 120.00323 * 19 17 15 22 22 H 1.48498 * 109.47276 * 240.00076 * 19 17 15 23 23 C 1.52997 * 109.47310 * 275.00530 * 13 12 10 24 24 C 1.53001 * 109.47168 * 64.99710 * 23 13 12 25 25 C 1.46839 * 111.00234 * 301.83737 * 4 3 2 26 26 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 30 30 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 31 31 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 32 32 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 33 33 H 1.09002 * 109.46476 * 294.17097 * 5 4 3 34 34 H 1.08994 * 109.46671 * 54.14251 * 5 4 3 35 35 H 1.09001 * 109.50321 * 179.12207 * 6 5 4 36 36 H 1.08999 * 109.50410 * 299.19360 * 6 5 4 37 37 H 1.08994 * 109.51809 * 62.24931 * 7 6 5 38 38 H 1.09001 * 109.52317 * 182.37652 * 7 6 5 39 39 H 0.97000 * 119.99918 * 0.02562 * 12 10 8 40 40 H 0.96995 * 120.00215 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.47542 * 185.00137 * 23 13 12 42 42 H 1.09005 * 109.46875 * 304.99981 * 23 13 12 43 43 H 1.08998 * 109.47252 * 299.99825 * 24 23 13 44 44 H 1.08996 * 109.46787 * 60.00478 * 24 23 13 45 45 H 1.08999 * 109.47074 * 179.97438 * 24 23 13 46 46 H 1.08998 * 109.46586 * 305.85726 * 25 4 3 47 47 H 1.09001 * 109.46136 * 65.82255 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0346 0.8862 -1.2538 6 6 5.5575 1.0352 -1.2804 7 6 6.1588 0.2975 -0.0809 8 6 5.5586 0.8632 1.2092 9 1 5.8219 1.9169 1.3016 10 6 6.1015 0.1035 2.3920 11 8 5.3449 -0.4925 3.1291 12 7 7.4279 0.0861 2.6306 13 6 7.9557 -0.6521 3.7808 14 1 7.3589 -1.5500 3.9411 15 6 9.3869 -1.0412 3.5142 16 1 9.8566 -0.7657 2.5814 17 6 10.0971 -1.7478 4.4615 18 7 9.5253 -2.0828 5.5974 19 14 11.8711 -2.2307 4.1306 20 1 12.2762 -1.7385 2.7894 21 1 12.7494 -1.6274 5.1650 22 1 11.9981 -3.7096 4.1748 23 6 7.8913 0.2323 5.0276 24 6 6.4292 0.5247 5.3706 25 6 4.0357 0.7192 1.1636 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6765 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.7718 -0.1696 -1.3210 34 1 3.6024 1.4223 -2.0987 35 1 5.9489 0.6082 -2.2038 36 1 5.8207 2.0916 -1.2280 37 1 5.9286 -0.7653 -0.1543 38 1 7.2399 0.4364 -0.0724 39 1 8.0330 0.5629 2.0413 40 1 10.0248 -2.5802 6.2636 41 1 8.3646 -0.2829 5.8634 42 1 8.4139 1.1694 4.8356 43 1 5.9560 1.0401 4.5348 44 1 5.9067 -0.4124 5.5625 45 1 6.3834 1.1544 6.2591 46 1 3.6043 1.1340 2.0746 47 1 3.7729 -0.3358 1.0852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887268533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:12 Heat of formation + Delta-G solvation = -80.654442 kcal Electronic energy + Delta-G solvation = -23490.742145 eV Core-core repulsion = 20285.410591 eV Total energy + Delta-G solvation = -3205.331554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26777 -39.61807 -36.94203 -35.90681 -34.27126 -33.11431 -32.33286 -31.78949 -28.95223 -27.17074 -25.53830 -24.52245 -24.24810 -22.61465 -21.90642 -21.03274 -20.20460 -18.92230 -17.52460 -17.27243 -16.78373 -16.30391 -16.19289 -15.74632 -15.51779 -15.39624 -15.02627 -14.71245 -14.57452 -14.33796 -13.82764 -13.62117 -13.43230 -13.29252 -13.17194 -12.88945 -12.74694 -12.69304 -12.59751 -12.43203 -12.29080 -12.16225 -12.05408 -11.83051 -11.62577 -11.56631 -11.42952 -11.29346 -11.03029 -10.58691 -10.40847 -9.59433 -9.21798 -8.15792 -6.33009 1.43641 1.44873 1.56607 1.88980 2.35120 2.57187 3.11604 3.14849 3.69689 3.85072 3.92509 4.00060 4.08585 4.26054 4.30634 4.36926 4.38523 4.48847 4.57180 4.60653 4.65711 4.67049 4.75577 4.80796 4.85507 4.95040 4.96830 5.00044 5.07133 5.11512 5.16228 5.21695 5.23502 5.27180 5.37369 5.43054 5.44788 5.56921 5.65289 5.80389 5.94463 6.07054 6.17885 6.19089 6.75892 7.02862 7.34501 7.62614 8.89718 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025395 B = 0.003890 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.296279 B = 7197.033854 C = 7778.393407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.163 4.163 3 C 0.057 3.943 4 N -0.538 5.538 5 C 0.048 3.952 6 C -0.107 4.107 7 C -0.110 4.110 8 C -0.093 4.093 9 H 0.114 0.886 10 C 0.503 3.497 11 O -0.591 6.591 12 N -0.703 5.703 13 C 0.278 3.722 14 H -0.005 1.005 15 C -0.546 4.546 16 H 0.072 0.928 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.970 3.030 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.285 1.285 23 C -0.121 4.121 24 C -0.122 4.122 25 C 0.087 3.913 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.402 0.598 40 H 0.264 0.736 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.044 0.956 44 H 0.023 0.977 45 H 0.045 0.955 46 H 0.062 0.938 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.957 8.727 -15.288 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C -0.071 4.071 4 N -0.261 5.261 5 C -0.079 4.079 6 C -0.145 4.145 7 C -0.148 4.148 8 C -0.115 4.115 9 H 0.132 0.868 10 C 0.289 3.711 11 O -0.473 6.473 12 N -0.352 5.352 13 C 0.175 3.825 14 H 0.013 0.987 15 C -0.584 4.584 16 H 0.090 0.910 17 C -0.186 4.186 18 N -0.554 5.554 19 Si 0.795 3.205 20 H -0.183 1.183 21 H -0.205 1.205 22 H -0.211 1.211 23 C -0.160 4.160 24 C -0.180 4.180 25 C -0.042 4.042 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.237 0.763 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -11.270 8.706 -14.567 20.372 hybrid contribution 0.827 -1.458 0.370 1.717 sum -10.443 7.248 -14.197 19.056 Atomic orbital electron populations 1.21651 0.94100 1.01874 1.02484 1.22172 0.97865 0.98965 1.01243 1.22300 0.85879 0.95325 1.03551 1.62162 1.07999 1.53816 1.02134 1.22241 0.95939 0.97754 0.91976 1.21572 0.93991 1.01630 0.97259 1.21570 1.00888 0.99252 0.93062 1.21276 0.96190 1.01198 0.92839 0.86814 1.21115 0.82582 0.80974 0.86387 1.90642 1.58486 1.47136 1.51004 1.46249 1.06825 1.52060 1.30027 1.18339 0.92515 0.89173 0.82493 0.98692 1.21616 0.97061 1.36409 1.03312 0.91036 1.25779 1.02823 0.95367 0.94598 1.70057 1.38454 1.38998 1.07901 0.85333 0.78976 0.77560 0.78676 1.18344 1.20492 1.21101 1.21784 0.94814 0.98479 1.00931 1.21667 0.97306 0.99388 0.99601 1.21583 0.92823 0.96035 0.93710 0.91242 0.92952 0.92577 0.91998 0.93997 0.88685 0.90928 0.95391 0.88650 0.89313 0.90004 0.93437 0.90233 0.76314 0.92667 0.91090 0.94038 0.93739 0.95743 0.93624 0.91900 0.95795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.91 71.98 0.71 -1.51 16 2 C -0.16 -3.18 5.23 30.59 0.16 -3.02 16 3 C 0.06 1.06 5.36 86.30 0.46 1.52 16 4 N -0.54 -11.78 4.86 -896.37 -4.35 -16.13 16 5 C 0.05 0.89 5.05 86.33 0.44 1.32 16 6 C -0.11 -1.88 6.09 30.65 0.19 -1.70 16 7 C -0.11 -2.64 5.16 30.67 0.16 -2.48 16 8 C -0.09 -2.69 2.69 -11.49 -0.03 -2.72 16 9 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 10 C 0.50 19.91 5.73 87.65 0.50 20.41 16 11 O -0.59 -28.41 13.13 -3.03 -0.04 -28.45 16 12 N -0.70 -29.05 4.92 -446.10 -2.20 -31.24 16 13 C 0.28 14.38 2.24 44.24 0.10 14.48 16 14 H 0.00 -0.30 7.58 -2.39 -0.02 -0.32 16 15 C -0.55 -28.92 8.73 25.60 0.22 -28.70 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 17 C 0.01 0.77 5.29 84.66 0.45 1.22 16 18 N -0.92 -52.73 11.29 21.45 0.24 -52.49 16 19 Si 0.97 42.15 29.54 68.60 2.03 44.17 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 C -0.12 -6.05 5.45 30.59 0.17 -5.88 16 24 C -0.12 -5.63 8.51 71.98 0.61 -5.01 16 25 C 0.09 2.49 3.41 86.33 0.29 2.78 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 1.19 6.68 -2.39 -0.02 1.17 16 30 H 0.04 1.04 6.51 -2.39 -0.02 1.03 16 31 H 0.09 1.37 8.06 -2.39 -0.02 1.35 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.03 0.56 6.75 -2.39 -0.02 0.55 16 34 H 0.10 1.35 8.06 -2.39 -0.02 1.33 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.79 7.65 -2.39 -0.02 1.78 16 39 H 0.40 14.14 8.01 -92.71 -0.74 13.40 16 40 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.07 3.97 5.95 -2.39 -0.01 3.95 16 42 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.04 1.97 5.65 -2.39 -0.01 1.95 16 44 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 45 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 47 H 0.02 0.78 6.55 -2.39 -0.02 0.77 16 Total: -1.00 -64.93 354.77 0.30 -64.64 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.19 Total: 28.80 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 4.43 Total: -9.29 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -6.31 Total: -99.86 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.04 Total: -28.45 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -64.93 0.30 -64.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887268533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.019 kcal (2) G-P(sol) polarization free energy of solvation -64.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds