Wall clock time and date at job start Fri Apr 10 2020 14:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47174 * 2 1 4 4 N 1.46900 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.46846 * 111.00315 * 294.21058 * 4 3 2 6 6 C 1.53031 * 109.52615 * 174.16312 * 5 4 3 7 7 C 1.53115 * 109.31165 * 59.15631 * 6 5 4 8 8 C 1.53120 * 109.15871 * 302.40647 * 7 6 5 9 9 H 1.09002 * 109.50122 * 297.63061 * 8 7 6 10 10 C 1.50702 * 109.50525 * 177.55638 * 8 7 6 11 11 O 1.21283 * 120.00262 * 240.08047 * 10 8 7 12 12 N 1.34777 * 119.99928 * 59.79953 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 H 1.09007 * 109.47463 * 325.00619 * 13 12 10 15 15 C 1.50697 * 109.47763 * 205.00186 * 13 12 10 16 16 H 1.08011 * 119.99571 * 0.02562 * 15 13 12 17 17 C 1.37871 * 120.00501 * 179.97438 * 15 13 12 18 18 N 1.31519 * 119.99989 * 179.97438 * 17 15 13 19 19 Si 1.86803 * 119.99795 * 0.02562 * 17 15 13 20 20 H 1.48498 * 109.47077 * 89.99770 * 19 17 15 21 21 H 1.48500 * 109.46835 * 209.99686 * 19 17 15 22 22 H 1.48499 * 109.47044 * 329.99460 * 19 17 15 23 23 C 1.53000 * 109.47070 * 85.00207 * 13 12 10 24 24 C 1.53003 * 109.47155 * 295.00511 * 23 13 12 25 25 C 1.46846 * 111.00025 * 169.99789 * 4 3 2 26 26 H 1.09001 * 109.46867 * 299.99867 * 1 2 3 27 27 H 1.08997 * 109.47548 * 60.00358 * 1 2 3 28 28 H 1.09002 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47739 * 239.99881 * 2 1 3 30 30 H 1.08997 * 109.47548 * 119.99642 * 2 1 3 31 31 H 1.08994 * 109.46698 * 59.99783 * 3 2 1 32 32 H 1.08997 * 109.46590 * 300.00228 * 3 2 1 33 33 H 1.09008 * 109.45742 * 294.17930 * 5 4 3 34 34 H 1.09003 * 109.45943 * 54.13883 * 5 4 3 35 35 H 1.08997 * 109.50465 * 179.11842 * 6 5 4 36 36 H 1.09005 * 109.50051 * 299.19271 * 6 5 4 37 37 H 1.08998 * 109.56014 * 182.48238 * 7 6 5 38 38 H 1.08999 * 109.49642 * 62.28937 * 7 6 5 39 39 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 40 40 H 0.97002 * 119.99452 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.47265 * 54.99835 * 23 13 12 42 42 H 1.08999 * 109.47282 * 175.00398 * 23 13 12 43 43 H 1.09005 * 109.47275 * 180.02562 * 24 23 13 44 44 H 1.09004 * 109.46996 * 299.99254 * 24 23 13 45 45 H 1.08994 * 109.47555 * 59.99581 * 24 23 13 46 46 H 1.09000 * 109.45758 * 65.82321 * 25 4 3 47 47 H 1.09000 * 109.45132 * 305.85543 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0358 0.8802 1.2494 6 6 5.5586 0.7615 1.1550 7 6 6.1599 2.1470 0.9035 8 6 5.5579 2.7310 -0.3775 9 1 5.8208 2.0976 -1.2248 10 6 6.0994 4.1196 -0.6004 11 8 5.3421 5.0659 -0.6454 12 7 7.4258 4.3106 -0.7440 13 6 7.9528 5.6612 -0.9546 14 1 7.2487 6.2364 -1.5559 15 6 9.2754 5.5783 -1.6722 16 1 9.6825 4.6156 -1.9446 17 6 9.9652 6.7311 -1.9819 18 7 11.1197 6.6586 -2.6077 19 14 9.2607 8.3960 -1.5115 20 1 9.7381 8.7704 -0.1561 21 1 9.7065 9.4173 -2.4930 22 1 7.7775 8.3238 -1.5115 23 6 8.1488 6.3489 0.3980 24 6 6.7893 6.5453 1.0720 25 6 4.0351 2.7927 -0.2387 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.7733 1.5343 2.0809 34 1 3.6039 -0.1070 1.4139 35 1 5.9508 0.3587 2.0888 36 1 5.8214 0.0959 0.3328 37 1 7.2407 2.0609 0.7917 38 1 5.9307 2.8012 1.7447 39 1 8.0315 3.5539 -0.7081 40 1 11.6052 7.4697 -2.8253 41 1 8.7825 5.7290 1.0323 42 1 8.6231 7.3186 0.2473 43 1 6.9289 7.0356 2.0355 44 1 6.1556 7.1652 0.4378 45 1 6.3150 5.5756 1.2227 46 1 3.7726 3.4378 0.5997 47 1 3.6028 3.1943 -1.1552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887268534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:17 Heat of formation + Delta-G solvation = -54.808893 kcal Electronic energy + Delta-G solvation = -23396.761961 eV Core-core repulsion = 20192.551154 eV Total energy + Delta-G solvation = -3204.210807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.99036 -38.36792 -35.44002 -34.93519 -32.53658 -32.04543 -31.50163 -30.67304 -27.52504 -26.40168 -24.30373 -23.09213 -22.55953 -21.54407 -20.53913 -19.82711 -19.33255 -17.34750 -16.28463 -15.82417 -15.57983 -15.48539 -14.90341 -14.68674 -14.18827 -14.11774 -14.01457 -13.57723 -13.23005 -13.09683 -12.83962 -12.64033 -12.24053 -12.05329 -11.90924 -11.83931 -11.73148 -11.43965 -11.29691 -11.12633 -11.06090 -10.88030 -10.70548 -10.60609 -10.52624 -10.36053 -9.91560 -9.53735 -9.21261 -8.97207 -8.74165 -8.39598 -8.02607 -6.20356 -4.22529 3.23244 3.28824 3.35690 3.40968 3.61244 4.18143 4.32248 4.65533 4.70957 4.79073 4.89476 4.95625 5.11842 5.13456 5.17408 5.29139 5.33881 5.43536 5.49123 5.54926 5.57313 5.68435 5.73791 5.78022 5.88158 5.90466 5.96049 5.97873 6.00656 6.02888 6.07115 6.17038 6.20872 6.31155 6.66386 6.70517 6.85974 6.96555 7.00916 7.02109 7.28928 7.33569 7.54271 8.17851 8.56529 8.77549 8.99343 9.41030 10.91790 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.003649 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.953384 B = 7671.836366 C = 7862.511772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.056 3.944 4 N -0.541 5.541 5 C 0.051 3.949 6 C -0.114 4.114 7 C -0.112 4.112 8 C -0.105 4.105 9 H 0.101 0.899 10 C 0.508 3.492 11 O -0.553 6.553 12 N -0.699 5.699 13 C 0.242 3.758 14 H 0.048 0.952 15 C -0.534 4.534 16 H 0.080 0.920 17 C 0.078 3.922 18 N -0.893 5.893 19 Si 0.883 3.117 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.260 1.260 23 C -0.138 4.138 24 C -0.143 4.143 25 C 0.080 3.920 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.394 0.606 40 H 0.267 0.733 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.030 0.970 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.040 0.960 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.348 -13.048 8.203 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.077 4.077 6 C -0.152 4.152 7 C -0.150 4.150 8 C -0.126 4.126 9 H 0.119 0.881 10 C 0.293 3.707 11 O -0.432 6.432 12 N -0.347 5.347 13 C 0.139 3.861 14 H 0.066 0.934 15 C -0.572 4.572 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.530 5.530 19 Si 0.713 3.287 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.185 1.185 23 C -0.176 4.176 24 C -0.200 4.200 25 C -0.048 4.048 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.228 0.772 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.553 -12.542 7.695 21.410 hybrid contribution -0.067 1.157 0.902 1.469 sum -15.619 -11.385 8.597 21.154 Atomic orbital electron populations 1.21741 0.95766 1.01632 1.01807 1.21547 0.95228 0.96497 1.02600 1.22121 0.87098 0.97058 1.00934 1.61900 1.07163 1.22592 1.34856 1.22164 0.95667 0.99631 0.90211 1.21574 0.94301 0.97196 1.02139 1.21566 1.00428 0.96451 0.96569 1.21311 0.95902 0.95218 1.00215 0.88094 1.20333 0.83180 0.90172 0.76996 1.90655 1.57715 1.43280 1.51596 1.46156 1.06151 1.11451 1.70909 1.19128 0.95255 0.79503 0.92261 0.93405 1.21065 1.02810 0.95454 1.37870 0.90214 1.24837 0.94455 0.99034 0.94213 1.69874 1.13944 1.29087 1.40072 0.86902 0.80616 0.83706 0.77498 1.20284 1.22201 1.18479 1.22278 0.96006 1.00277 0.99076 1.21869 0.98151 1.01354 0.98634 1.21768 0.93310 0.87897 1.01836 0.92947 0.92606 0.92632 0.91094 0.92076 0.95032 0.90696 0.95084 0.90628 0.91340 0.90828 0.90854 0.91817 0.77238 0.92313 0.92360 0.92860 0.95103 0.92934 0.92953 0.94135 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.15 0.37 -0.68 16 2 C -0.12 -0.99 5.86 -26.73 -0.16 -1.14 16 3 C 0.06 0.55 4.96 -3.82 -0.02 0.53 16 4 N -0.54 -6.15 4.66 -234.67 -1.09 -7.24 16 5 C 0.05 0.51 5.29 -3.84 -0.02 0.49 16 6 C -0.11 -1.11 6.09 -26.66 -0.16 -1.27 16 7 C -0.11 -1.32 5.16 -26.61 -0.14 -1.46 16 8 C -0.10 -1.46 2.69 -91.69 -0.25 -1.71 16 9 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 10 C 0.51 9.31 5.73 -10.98 -0.06 9.25 16 11 O -0.55 -11.90 13.12 5.55 0.07 -11.83 16 12 N -0.70 -13.64 4.92 -54.93 -0.27 -13.91 16 13 C 0.24 5.72 1.83 -69.08 -0.13 5.59 16 14 H 0.05 1.26 6.63 -51.93 -0.34 0.92 16 15 C -0.53 -14.41 9.31 -34.44 -0.32 -14.73 16 16 H 0.08 2.26 7.98 -52.48 -0.42 1.84 16 17 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 18 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 19 Si 0.88 21.87 24.41 -169.99 -4.15 17.72 16 20 H -0.28 -6.63 6.83 56.52 0.39 -6.24 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.26 -6.40 6.53 56.52 0.37 -6.04 16 23 C -0.14 -3.06 5.11 -26.73 -0.14 -3.20 16 24 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16 25 C 0.08 1.09 4.03 -3.84 -0.02 1.07 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 31 H 0.03 0.32 8.12 -51.93 -0.42 -0.11 16 32 H 0.07 0.76 7.99 -51.93 -0.41 0.34 16 33 H 0.03 0.33 8.14 -51.92 -0.42 -0.10 16 34 H 0.08 0.66 6.21 -51.93 -0.32 0.33 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.83 7.64 -51.93 -0.40 0.43 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.39 6.86 8.00 -40.82 -0.33 6.53 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 45 H 0.05 1.03 5.64 -51.93 -0.29 0.74 16 46 H 0.04 0.60 8.08 -51.93 -0.42 0.18 16 47 H 0.08 1.18 7.99 -51.93 -0.41 0.77 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -30.24 351.14 -8.71 -38.95 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.52 Total: 4.49 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.82 Total: -7.72 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.59 Total: -46.89 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.15 Total: 17.72 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.24 -8.71 -38.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887268534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.862 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds