Wall clock time and date at job start Fri Apr 10 2020 14:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47174 * 2 1 4 4 N 1.46900 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.46846 * 111.00315 * 294.21058 * 4 3 2 6 6 C 1.53031 * 109.52615 * 174.16312 * 5 4 3 7 7 C 1.53115 * 109.31165 * 59.15631 * 6 5 4 8 8 C 1.53120 * 109.15871 * 302.40647 * 7 6 5 9 9 H 1.09002 * 109.50122 * 297.63061 * 8 7 6 10 10 C 1.50702 * 109.50525 * 177.55638 * 8 7 6 11 11 O 1.21283 * 120.00262 * 240.08047 * 10 8 7 12 12 N 1.34777 * 119.99928 * 59.79953 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 H 1.09007 * 109.47463 * 325.00619 * 13 12 10 15 15 C 1.50697 * 109.47763 * 205.00186 * 13 12 10 16 16 H 1.08011 * 119.99571 * 0.02562 * 15 13 12 17 17 C 1.37871 * 120.00501 * 179.97438 * 15 13 12 18 18 N 1.31519 * 119.99989 * 179.97438 * 17 15 13 19 19 Si 1.86803 * 119.99795 * 0.02562 * 17 15 13 20 20 H 1.48498 * 109.47077 * 89.99770 * 19 17 15 21 21 H 1.48500 * 109.46835 * 209.99686 * 19 17 15 22 22 H 1.48499 * 109.47044 * 329.99460 * 19 17 15 23 23 C 1.53000 * 109.47070 * 85.00207 * 13 12 10 24 24 C 1.53003 * 109.47155 * 295.00511 * 23 13 12 25 25 C 1.46846 * 111.00025 * 169.99789 * 4 3 2 26 26 H 1.09001 * 109.46867 * 299.99867 * 1 2 3 27 27 H 1.08997 * 109.47548 * 60.00358 * 1 2 3 28 28 H 1.09002 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47739 * 239.99881 * 2 1 3 30 30 H 1.08997 * 109.47548 * 119.99642 * 2 1 3 31 31 H 1.08994 * 109.46698 * 59.99783 * 3 2 1 32 32 H 1.08997 * 109.46590 * 300.00228 * 3 2 1 33 33 H 1.09008 * 109.45742 * 294.17930 * 5 4 3 34 34 H 1.09003 * 109.45943 * 54.13883 * 5 4 3 35 35 H 1.08997 * 109.50465 * 179.11842 * 6 5 4 36 36 H 1.09005 * 109.50051 * 299.19271 * 6 5 4 37 37 H 1.08998 * 109.56014 * 182.48238 * 7 6 5 38 38 H 1.08999 * 109.49642 * 62.28937 * 7 6 5 39 39 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 40 40 H 0.97002 * 119.99452 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.47265 * 54.99835 * 23 13 12 42 42 H 1.08999 * 109.47282 * 175.00398 * 23 13 12 43 43 H 1.09005 * 109.47275 * 180.02562 * 24 23 13 44 44 H 1.09004 * 109.46996 * 299.99254 * 24 23 13 45 45 H 1.08994 * 109.47555 * 59.99581 * 24 23 13 46 46 H 1.09000 * 109.45758 * 65.82321 * 25 4 3 47 47 H 1.09000 * 109.45132 * 305.85543 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0358 0.8802 1.2494 6 6 5.5586 0.7615 1.1550 7 6 6.1599 2.1470 0.9035 8 6 5.5579 2.7310 -0.3775 9 1 5.8208 2.0976 -1.2248 10 6 6.0994 4.1196 -0.6004 11 8 5.3421 5.0659 -0.6454 12 7 7.4258 4.3106 -0.7440 13 6 7.9528 5.6612 -0.9546 14 1 7.2487 6.2364 -1.5559 15 6 9.2754 5.5783 -1.6722 16 1 9.6825 4.6156 -1.9446 17 6 9.9652 6.7311 -1.9819 18 7 11.1197 6.6586 -2.6077 19 14 9.2607 8.3960 -1.5115 20 1 9.7381 8.7704 -0.1561 21 1 9.7065 9.4173 -2.4930 22 1 7.7775 8.3238 -1.5115 23 6 8.1488 6.3489 0.3980 24 6 6.7893 6.5453 1.0720 25 6 4.0351 2.7927 -0.2387 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.7733 1.5343 2.0809 34 1 3.6039 -0.1070 1.4139 35 1 5.9508 0.3587 2.0888 36 1 5.8214 0.0959 0.3328 37 1 7.2407 2.0609 0.7917 38 1 5.9307 2.8012 1.7447 39 1 8.0315 3.5539 -0.7081 40 1 11.6052 7.4697 -2.8253 41 1 8.7825 5.7290 1.0323 42 1 8.6231 7.3186 0.2473 43 1 6.9289 7.0356 2.0355 44 1 6.1556 7.1652 0.4378 45 1 6.3150 5.5756 1.2227 46 1 3.7726 3.4378 0.5997 47 1 3.6028 3.1943 -1.1552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887268534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:05:16 Heat of formation + Delta-G solvation = -75.294322 kcal Electronic energy + Delta-G solvation = -23397.650276 eV Core-core repulsion = 20192.551154 eV Total energy + Delta-G solvation = -3205.099122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31291 -39.55065 -37.12298 -35.89444 -34.39826 -33.44897 -32.63753 -31.82329 -29.41316 -27.20518 -25.50486 -24.47937 -23.87758 -22.67602 -21.76149 -21.17063 -20.63848 -19.07804 -17.79679 -17.49749 -16.83728 -16.42933 -16.32901 -15.86818 -15.58073 -15.23249 -15.03757 -14.87988 -14.67353 -14.47515 -14.00898 -13.78274 -13.67215 -13.54307 -13.44493 -12.95836 -12.80685 -12.79046 -12.57575 -12.43194 -12.34907 -12.04093 -11.91358 -11.86903 -11.58943 -11.42222 -11.33680 -11.29802 -11.19690 -10.86637 -10.49219 -9.74481 -9.30987 -8.38746 -6.43852 1.25395 1.33819 1.43602 1.80364 2.25021 2.38032 2.96958 3.02244 3.67087 3.79267 3.90999 4.04415 4.15679 4.21659 4.24918 4.28746 4.31469 4.38962 4.46892 4.49985 4.58165 4.63731 4.70157 4.77049 4.81303 4.85791 4.92034 4.98402 4.99378 5.00715 5.11189 5.11488 5.18642 5.22357 5.26585 5.32432 5.40622 5.41617 5.45790 5.51139 5.68714 6.07383 6.14562 6.17454 6.58475 6.91238 7.19598 7.49475 8.76526 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.003649 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.953384 B = 7671.836366 C = 7862.511772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.054 3.946 4 N -0.542 5.542 5 C 0.049 3.951 6 C -0.108 4.108 7 C -0.109 4.109 8 C -0.093 4.093 9 H 0.111 0.889 10 C 0.508 3.492 11 O -0.585 6.585 12 N -0.698 5.698 13 C 0.250 3.750 14 H 0.019 0.981 15 C -0.532 4.532 16 H 0.057 0.943 17 C 0.030 3.970 18 N -0.934 5.934 19 Si 0.936 3.064 20 H -0.259 1.259 21 H -0.294 1.294 22 H -0.262 1.262 23 C -0.136 4.136 24 C -0.132 4.132 25 C 0.087 3.913 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.405 0.595 40 H 0.270 0.730 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.057 0.943 44 H 0.034 0.966 45 H 0.054 0.946 46 H 0.024 0.976 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.414 -14.356 9.900 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.074 4.074 4 N -0.267 5.267 5 C -0.079 4.079 6 C -0.145 4.145 7 C -0.147 4.147 8 C -0.115 4.115 9 H 0.129 0.871 10 C 0.295 3.705 11 O -0.466 6.466 12 N -0.347 5.347 13 C 0.144 3.856 14 H 0.037 0.963 15 C -0.570 4.570 16 H 0.075 0.925 17 C -0.170 4.170 18 N -0.573 5.573 19 Si 0.763 3.237 20 H -0.185 1.185 21 H -0.221 1.221 22 H -0.187 1.187 23 C -0.175 4.175 24 C -0.190 4.190 25 C -0.041 4.041 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.240 0.760 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.043 0.957 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.629 -13.885 9.409 23.619 hybrid contribution 0.233 1.488 0.333 1.543 sum -16.396 -12.397 9.742 22.747 Atomic orbital electron populations 1.21728 0.94837 1.02350 1.01842 1.21493 0.95973 0.94961 1.02726 1.22194 0.86248 0.98404 1.00560 1.61940 1.08042 1.20761 1.35913 1.22275 0.96033 1.00342 0.89240 1.21566 0.93852 0.95671 1.03459 1.21582 1.00865 0.97540 0.94735 1.21259 0.96074 0.92215 1.01943 0.87120 1.21072 0.82218 0.91684 0.75538 1.90640 1.58303 1.44931 1.52775 1.46001 1.07060 1.10309 1.71326 1.18760 0.92735 0.81505 0.92551 0.96274 1.21302 1.03827 0.94449 1.37430 0.92519 1.25537 0.94715 1.02371 0.94370 1.69979 1.15392 1.30120 1.41794 0.86045 0.79721 0.79936 0.77972 1.18508 1.22105 1.18685 1.22193 0.97336 0.99615 0.98309 1.21748 0.96400 1.01472 0.99336 1.21593 0.92997 0.89071 1.00450 0.92747 0.92791 0.91563 0.91488 0.91318 0.95176 0.91382 0.95483 0.88693 0.89162 0.90357 0.90150 0.92558 0.75953 0.92095 0.91216 0.93942 0.92363 0.94685 0.92722 0.95728 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.11 -1.62 5.86 30.59 0.18 -1.44 16 3 C 0.05 1.00 4.96 86.31 0.43 1.42 16 4 N -0.54 -11.49 4.66 -896.38 -4.17 -15.66 16 5 C 0.05 0.84 5.29 86.32 0.46 1.30 16 6 C -0.11 -1.77 6.09 30.64 0.19 -1.58 16 7 C -0.11 -2.35 5.16 30.67 0.16 -2.19 16 8 C -0.09 -2.50 2.69 -11.49 -0.03 -2.53 16 9 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 10 C 0.51 18.43 5.73 87.66 0.50 18.93 16 11 O -0.59 -25.35 13.12 -3.04 -0.04 -25.39 16 12 N -0.70 -27.01 4.92 -446.09 -2.20 -29.21 16 13 C 0.25 11.79 1.83 44.24 0.08 11.88 16 14 H 0.02 1.03 6.63 -2.38 -0.02 1.02 16 15 C -0.53 -29.06 9.31 25.60 0.24 -28.82 16 16 H 0.06 3.29 7.98 -2.91 -0.02 3.27 16 17 C 0.03 1.69 5.45 84.65 0.46 2.15 16 18 N -0.93 -56.27 13.96 21.45 0.30 -55.97 16 19 Si 0.94 45.22 24.41 68.60 1.67 46.89 16 20 H -0.26 -11.77 6.83 99.48 0.68 -11.09 16 21 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 22 H -0.26 -12.65 6.53 99.48 0.65 -12.00 16 23 C -0.14 -5.88 5.11 30.60 0.16 -5.72 16 24 C -0.13 -5.14 8.51 71.98 0.61 -4.53 16 25 C 0.09 2.33 4.03 86.32 0.35 2.68 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 0.88 6.43 -2.39 -0.02 0.87 16 31 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 32 H 0.07 1.34 7.99 -2.39 -0.02 1.32 16 33 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.09 1.32 6.21 -2.39 -0.01 1.31 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.62 7.64 -2.39 -0.02 1.60 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.41 13.84 8.00 -92.71 -0.74 13.10 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.04 1.93 3.22 -2.39 -0.01 1.92 16 43 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.03 1.46 7.85 -2.38 -0.02 1.44 16 45 H 0.05 2.08 5.64 -2.39 -0.01 2.06 16 46 H 0.02 0.73 8.08 -2.39 -0.02 0.71 16 47 H 0.06 1.91 7.99 -2.39 -0.02 1.90 16 Total: -1.00 -65.34 351.14 0.16 -65.18 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.11 Total: 23.69 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 4.49 Total: -9.53 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -6.07 Total: -100.84 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.04 Total: -25.39 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.67 Total: 46.89 kcal Total: -65.34 0.16 -65.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887268534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.116 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds