Wall clock time and date at job start Fri Apr 10 2020 14:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99892 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00241 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00125 * 8 6 4 10 10 H 1.48503 * 109.47215 * 210.00315 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.00276 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.52997 * 109.47380 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47078 * 180.02562 * 19 18 17 21 21 C 1.39879 * 126.03886 * 269.68653 * 20 19 18 22 22 N 1.30835 * 108.20303 * 179.81673 * 21 20 19 23 23 N 1.40088 * 108.20236 * 0.44607 * 22 21 20 24 24 H 0.96999 * 126.03423 * 179.69932 * 23 22 21 25 25 C 1.34947 * 107.92707 * 359.71356 * 23 22 21 26 26 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 27 27 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 29 29 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 30 30 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 31 31 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 33 33 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 34 34 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 35 35 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 36 36 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 37 37 H 1.00896 * 111.00687 * 303.95477 * 17 16 13 38 38 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 39 39 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 40 40 H 1.09005 * 109.47126 * 300.00183 * 19 18 17 41 41 H 1.09001 * 109.47417 * 59.99821 * 19 18 17 42 42 H 1.08002 * 125.89377 * 0.02562 * 21 20 19 43 43 H 1.07997 * 126.12499 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6618 8 14 2.9998 4.2763 0.2309 9 1 2.0631 4.9799 -0.6817 10 1 3.8862 5.2680 0.8913 11 1 3.8238 3.3176 -0.5485 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7491 -6.6763 -3.0438 20 6 2.2713 -7.4949 -4.1962 21 6 1.6300 -7.6906 -5.4239 22 7 2.3917 -8.4530 -6.1658 23 7 3.5386 -8.7754 -5.4288 24 1 4.2733 -9.3319 -5.7311 25 6 3.4405 -8.1754 -4.2241 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.0797 1.3445 -0.1083 30 1 1.5610 1.9274 -0.8309 31 1 1.9882 4.8554 2.8235 32 1 1.5611 -0.3871 -2.0628 33 1 3.0797 -0.6610 -1.1757 34 1 3.1653 -2.6770 0.2786 35 1 1.8160 -2.6058 -3.0857 36 1 3.2698 -3.0086 -2.1409 37 1 2.0000 -4.8410 -1.1732 38 1 1.8742 -4.8135 -4.1181 39 1 3.3283 -5.2165 -3.1739 40 1 2.1129 -7.0962 -2.1059 41 1 0.6592 -6.6926 -3.0504 42 1 0.6732 -7.2802 -5.7110 43 1 4.1655 -8.2285 -3.4254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325854104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:18 Heat of formation + Delta-G solvation = 27.754134 kcal Electronic energy + Delta-G solvation = -21315.014568 eV Core-core repulsion = 18010.843619 eV Total energy + Delta-G solvation = -3304.170949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.53516 -38.44372 -36.46050 -35.32889 -32.92395 -32.43944 -31.60183 -30.01814 -28.18694 -27.31162 -25.60477 -23.48592 -22.48117 -22.25914 -21.17483 -20.29711 -20.08619 -18.11678 -16.95862 -16.47394 -16.03118 -15.38751 -15.09013 -14.86269 -14.78602 -14.69891 -14.21361 -13.95082 -13.86064 -13.36875 -13.20411 -12.72003 -12.56624 -12.40278 -12.16701 -11.85391 -11.59792 -11.38189 -11.23304 -10.97055 -10.88426 -10.71302 -10.67491 -10.24079 -10.04020 -9.90946 -9.58193 -9.22060 -8.85258 -8.56615 -8.55581 -7.31942 -6.03377 -4.00364 1.50598 2.39324 2.52263 3.27953 3.35526 3.36856 3.92233 4.42475 4.43099 4.50936 4.60124 4.80142 4.92614 5.01215 5.09522 5.16010 5.24502 5.26249 5.32147 5.38926 5.44474 5.54676 5.62242 5.70241 5.86058 5.96566 5.98257 6.14533 6.25956 6.27524 6.35964 6.72905 6.85105 6.85758 6.86266 7.01599 7.25822 7.28445 7.60712 7.91407 7.93527 8.10833 8.68369 9.06625 9.58217 11.09824 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.042135 B = 0.002278 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.365690 B =12286.396594 C =12516.251755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.021 3.979 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.545 6.545 16 C 0.029 3.971 17 N -0.687 5.687 18 C 0.064 3.936 19 C -0.039 4.039 20 C -0.232 4.232 21 C 0.057 3.943 22 N -0.298 5.298 23 N -0.480 5.480 24 H 0.439 0.561 25 C 0.058 3.942 26 H 0.010 0.990 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.026 0.974 30 H -0.018 1.018 31 H 0.263 0.737 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.367 0.633 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.347 0.653 38 H 0.070 0.930 39 H 0.025 0.975 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.184 0.816 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 -23.833 -15.046 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.243 5.243 3 C 0.035 3.965 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.109 4.109 13 C 0.054 3.946 14 H 0.123 0.877 15 O -0.348 6.348 16 C -0.101 4.101 17 N -0.318 5.318 18 C -0.065 4.065 19 C -0.078 4.078 20 C -0.244 4.244 21 C -0.130 4.130 22 N -0.121 5.121 23 N -0.188 5.188 24 H 0.282 0.718 25 C -0.089 4.089 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.000 1.000 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.213 0.787 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.166 0.834 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.201 0.799 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.059 -24.434 -15.793 29.253 hybrid contribution 2.179 1.294 -0.775 2.650 sum 5.237 -23.140 -16.567 28.937 Atomic orbital electron populations 1.22283 0.88217 0.99744 1.01016 1.61869 1.07431 1.15911 1.39117 1.20213 0.95027 0.84211 0.97013 1.21045 1.35401 0.97130 1.00923 0.90026 1.24914 0.95847 0.97385 0.95331 1.69895 1.46987 1.13195 1.23870 0.86857 0.80617 0.80017 0.82167 1.20398 1.21158 1.19336 1.22764 1.00297 0.94378 0.93431 1.21981 0.99179 0.90584 0.82892 0.87698 1.86616 1.24817 1.84835 1.38547 1.22667 0.97482 0.89622 1.00349 1.60365 1.63683 1.01960 1.05836 1.21966 0.96617 0.92970 0.94943 1.19833 1.01406 0.92241 0.94356 1.20128 0.97165 1.08515 0.98586 1.23902 0.99882 0.96944 0.92250 1.77343 0.95363 1.19754 1.19604 1.46312 1.18959 1.41921 1.11613 0.71795 1.22440 0.99376 0.96939 0.90173 0.97177 0.93007 0.90281 0.95628 1.00048 0.92698 0.95210 0.91383 0.78720 0.90445 0.95123 0.83370 0.91165 0.95695 0.91440 0.90084 0.79912 0.80783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.16 60.06 0.55 1.25 16 2 N -0.52 -10.93 4.62 -244.36 -1.13 -12.06 16 3 C 0.16 3.96 3.79 -4.97 -0.02 3.94 16 4 C -0.51 -14.57 9.07 -34.44 -0.31 -14.88 16 5 H 0.08 2.57 7.35 -52.48 -0.39 2.18 16 6 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 7 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 8 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 12 C 0.02 0.34 4.62 -3.82 -0.02 0.33 16 13 C 0.11 1.54 3.08 -26.73 -0.08 1.46 16 14 H 0.11 1.55 6.47 -51.93 -0.34 1.22 16 15 O -0.54 -7.90 12.72 -35.23 -0.45 -8.35 16 16 C 0.03 0.31 5.36 -3.83 -0.02 0.29 16 17 N -0.69 -6.79 6.50 -113.78 -0.74 -7.53 16 18 C 0.06 0.53 5.67 -3.82 -0.02 0.51 16 19 C -0.04 -0.28 5.96 -27.89 -0.17 -0.45 16 20 C -0.23 -1.74 5.35 -105.05 -0.56 -2.31 16 21 C 0.06 0.48 11.96 -17.36 -0.21 0.27 16 22 N -0.30 -2.83 12.70 30.63 0.39 -2.44 16 23 N -0.48 -3.19 7.36 30.44 0.22 -2.97 16 24 H 0.44 1.55 8.96 -182.61 -1.64 -0.09 16 25 C 0.06 0.36 11.90 -17.22 -0.21 0.15 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.05 0.89 6.30 -51.93 -0.33 0.56 16 28 H 0.08 1.73 6.86 -51.93 -0.36 1.38 16 29 H 0.03 0.63 6.99 -51.93 -0.36 0.27 16 30 H -0.02 -0.44 7.55 -51.93 -0.39 -0.84 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.07 1.07 7.93 -51.93 -0.41 0.65 16 34 H 0.37 4.27 9.04 45.56 0.41 4.68 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.35 3.39 8.29 -39.29 -0.33 3.06 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.18 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -34.17 352.76 -8.96 -43.13 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.52 Total: 2.55 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.16 Total: -7.58 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.48 Total: -51.99 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.45 Total: -8.35 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.17 -8.96 -43.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325854104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.881 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds