Wall clock time and date at job start Fri Apr 10 2020 14:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99892 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00241 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00125 * 8 6 4 10 10 H 1.48503 * 109.47215 * 210.00315 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.00276 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.52997 * 109.47380 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.47078 * 180.02562 * 19 18 17 21 21 C 1.39879 * 126.03886 * 269.68653 * 20 19 18 22 22 N 1.30835 * 108.20303 * 179.81673 * 21 20 19 23 23 N 1.40088 * 108.20236 * 0.44607 * 22 21 20 24 24 H 0.96999 * 126.03423 * 179.69932 * 23 22 21 25 25 C 1.34947 * 107.92707 * 359.71356 * 23 22 21 26 26 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 27 27 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 29 29 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 30 30 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 31 31 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 33 33 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 34 34 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 35 35 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 36 36 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 37 37 H 1.00896 * 111.00687 * 303.95477 * 17 16 13 38 38 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 39 39 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 40 40 H 1.09005 * 109.47126 * 300.00183 * 19 18 17 41 41 H 1.09001 * 109.47417 * 59.99821 * 19 18 17 42 42 H 1.08002 * 125.89377 * 0.02562 * 21 20 19 43 43 H 1.07997 * 126.12499 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6618 8 14 2.9998 4.2763 0.2309 9 1 2.0631 4.9799 -0.6817 10 1 3.8862 5.2680 0.8913 11 1 3.8238 3.3176 -0.5485 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7491 -6.6763 -3.0438 20 6 2.2713 -7.4949 -4.1962 21 6 1.6300 -7.6906 -5.4239 22 7 2.3917 -8.4530 -6.1658 23 7 3.5386 -8.7754 -5.4288 24 1 4.2733 -9.3319 -5.7311 25 6 3.4405 -8.1754 -4.2241 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.0797 1.3445 -0.1083 30 1 1.5610 1.9274 -0.8309 31 1 1.9882 4.8554 2.8235 32 1 1.5611 -0.3871 -2.0628 33 1 3.0797 -0.6610 -1.1757 34 1 3.1653 -2.6770 0.2786 35 1 1.8160 -2.6058 -3.0857 36 1 3.2698 -3.0086 -2.1409 37 1 2.0000 -4.8410 -1.1732 38 1 1.8742 -4.8135 -4.1181 39 1 3.3283 -5.2165 -3.1739 40 1 2.1129 -7.0962 -2.1059 41 1 0.6592 -6.6926 -3.0504 42 1 0.6732 -7.2802 -5.7110 43 1 4.1655 -8.2285 -3.4254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325854104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:17 Heat of formation + Delta-G solvation = -1.734592 kcal Electronic energy + Delta-G solvation = -21316.293295 eV Core-core repulsion = 18010.843619 eV Total energy + Delta-G solvation = -3305.449676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.05650 -39.61720 -37.64124 -36.44374 -34.58527 -33.59428 -32.17441 -31.22798 -29.68355 -28.47746 -26.93628 -24.82439 -23.20094 -22.85335 -22.47348 -21.68186 -20.83116 -19.01651 -18.62203 -17.47565 -17.17643 -16.63206 -16.27026 -15.97920 -15.85578 -15.45137 -15.38762 -15.23368 -14.81462 -14.55896 -14.38841 -13.87913 -13.78636 -13.52430 -13.26501 -13.11051 -12.85858 -12.59553 -12.51265 -12.43643 -12.25997 -11.99213 -11.80977 -11.55555 -11.48907 -11.43017 -10.78572 -10.71772 -10.59254 -9.39538 -9.28890 -8.95593 -8.26924 -6.30495 1.00345 1.34857 1.36776 1.47655 1.83558 2.10474 2.35133 2.97184 3.06254 3.45735 3.74564 3.92259 4.02777 4.11496 4.15728 4.29211 4.35965 4.42856 4.49117 4.59029 4.60608 4.67346 4.71250 4.74197 4.82026 4.86536 4.91838 5.00481 5.03374 5.14484 5.27080 5.31498 5.43532 5.54471 5.73325 5.99680 6.12210 6.37382 6.47052 6.55129 6.68404 6.73684 6.76264 7.01703 7.32904 8.89884 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.042135 B = 0.002278 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.365690 B =12286.396594 C =12516.251755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.539 5.539 3 C 0.171 3.829 4 C -0.516 4.516 5 H 0.035 0.965 6 C 0.004 3.996 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.247 1.247 12 C 0.021 3.979 13 C 0.125 3.875 14 H 0.093 0.907 15 O -0.562 6.562 16 C 0.040 3.960 17 N -0.693 5.693 18 C 0.071 3.929 19 C -0.029 4.029 20 C -0.250 4.250 21 C 0.045 3.955 22 N -0.338 5.338 23 N -0.476 5.476 24 H 0.450 0.550 25 C 0.069 3.931 26 H 0.019 0.981 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.031 0.969 30 H -0.015 1.015 31 H 0.267 0.733 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.379 0.621 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.349 0.651 38 H 0.062 0.938 39 H 0.029 0.971 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.194 0.806 43 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 -24.770 -16.954 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.263 5.263 3 C 0.044 3.956 4 C -0.555 4.555 5 H 0.053 0.947 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.774 3.226 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.170 1.170 12 C -0.108 4.108 13 C 0.065 3.935 14 H 0.110 0.890 15 O -0.367 6.367 16 C -0.090 4.090 17 N -0.326 5.326 18 C -0.059 4.059 19 C -0.068 4.068 20 C -0.262 4.262 21 C -0.140 4.140 22 N -0.161 5.161 23 N -0.185 5.185 24 H 0.296 0.704 25 C -0.080 4.080 26 H 0.037 0.963 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.002 0.998 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.227 0.773 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.168 0.832 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.210 0.790 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.715 -25.414 -17.726 31.342 hybrid contribution 1.630 1.487 -0.098 2.209 sum 6.345 -23.927 -17.824 30.503 Atomic orbital electron populations 1.22192 0.87853 1.00941 0.99682 1.61748 1.07998 1.14322 1.42198 1.19971 0.95263 0.85949 0.94396 1.21283 1.34751 0.97495 1.01926 0.94681 1.25909 0.97102 0.98474 0.97848 1.70062 1.48679 1.13837 1.26409 0.85663 0.79167 0.78671 0.79073 1.19412 1.20681 1.17036 1.22890 1.00710 0.95245 0.91967 1.21823 0.98601 0.89255 0.83841 0.88957 1.86585 1.26117 1.84799 1.39224 1.22475 0.97975 0.89740 0.98806 1.60339 1.64077 1.01724 1.06430 1.21927 0.96766 0.93269 0.93891 1.19713 1.00942 0.91500 0.94667 1.20244 0.97919 1.09542 0.98483 1.24208 1.00373 0.96774 0.92690 1.77282 0.96701 1.21080 1.21003 1.46374 1.18682 1.41810 1.11641 0.70400 1.22963 0.99327 0.95328 0.90349 0.96278 0.90537 0.93772 0.95086 0.99754 0.92459 0.94089 0.90447 0.77276 0.90108 0.93944 0.83202 0.91906 0.95227 0.90504 0.90770 0.78957 0.77582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 9.16 127.69 1.17 2.80 16 2 N -0.54 -22.21 4.62 -927.03 -4.28 -26.49 16 3 C 0.17 8.23 3.79 85.56 0.32 8.55 16 4 C -0.52 -30.35 9.07 25.60 0.23 -30.12 16 5 H 0.03 2.32 7.35 -2.91 -0.02 2.30 16 6 C 0.00 0.21 5.47 84.65 0.46 0.68 16 7 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 8 Si 0.95 44.05 27.47 68.60 1.88 45.94 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 12 C 0.02 0.63 4.62 86.30 0.40 1.03 16 13 C 0.12 3.12 3.08 30.59 0.09 3.21 16 14 H 0.09 2.56 6.47 -2.39 -0.02 2.54 16 15 O -0.56 -15.28 12.72 -148.98 -1.90 -17.17 16 16 C 0.04 0.76 5.36 86.30 0.46 1.22 16 17 N -0.69 -12.09 6.50 -513.90 -3.34 -15.43 16 18 C 0.07 1.01 5.67 86.30 0.49 1.50 16 19 C -0.03 -0.36 5.96 29.85 0.18 -0.18 16 20 C -0.25 -3.32 5.35 -20.14 -0.11 -3.42 16 21 C 0.05 0.72 11.96 85.24 1.02 1.74 16 22 N -0.34 -6.14 12.70 -57.02 -0.72 -6.87 16 23 N -0.48 -5.55 7.36 -57.59 -0.42 -5.97 16 24 H 0.45 2.45 8.96 -213.33 -1.91 0.54 16 25 C 0.07 0.68 11.90 83.54 0.99 1.67 16 26 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 2.58 6.30 -2.39 -0.02 2.57 16 28 H 0.04 2.01 6.86 -2.39 -0.02 1.99 16 29 H 0.03 1.46 6.99 -2.38 -0.02 1.44 16 30 H -0.02 -0.72 7.55 -2.39 -0.02 -0.73 16 31 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 32 H 0.04 1.17 8.12 -2.39 -0.02 1.15 16 33 H 0.08 2.19 7.93 -2.39 -0.02 2.17 16 34 H 0.38 8.02 9.04 -74.06 -0.67 7.35 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.35 5.97 8.29 -89.70 -0.74 5.23 16 38 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.03 0.40 8.14 -2.39 -0.02 0.39 16 40 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 43 H 0.21 0.53 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -74.89 352.76 -5.12 -80.01 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -2.36 Total: 17.05 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 5.72 Total: -11.33 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -8.47 Total: -114.49 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -1.90 Total: -17.17 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.94 kcal Total: -74.89 -5.12 -80.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325854104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.273 kcal (2) G-P(sol) polarization free energy of solvation -74.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds