Wall clock time and date at job start Fri Apr 10 2020 14:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.46844 * 90.00277 * 8 6 4 10 10 H 1.48497 * 109.47088 * 210.00471 * 8 6 4 11 11 H 1.48503 * 109.46723 * 330.00198 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 N 1.46904 * 109.47085 * 184.99848 * 16 13 12 18 18 C 1.46902 * 110.99534 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.46547 * 180.02562 * 18 17 16 20 20 N 1.30498 * 125.64813 * 269.68796 * 19 18 17 21 21 C 1.34130 * 109.25956 * 179.89771 * 20 19 18 22 22 C 1.34670 * 108.01717 * 0.36951 * 21 20 19 23 23 N 1.35038 * 125.65322 * 89.99902 * 19 18 17 24 24 C 1.46501 * 126.39451 * 359.97438 * 23 19 18 25 25 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 26 26 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 27 27 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 28 28 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 29 29 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 30 30 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 32 32 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 33 33 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 34 34 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 35 35 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 36 36 H 1.00901 * 111.00111 * 303.95536 * 17 16 13 37 37 H 1.08997 * 109.47417 * 299.99878 * 18 17 16 38 38 H 1.08997 * 109.47488 * 60.00619 * 18 17 16 39 39 H 1.07994 * 125.99346 * 180.11668 * 21 20 19 40 40 H 1.08001 * 126.59540 * 179.74525 * 22 21 20 41 41 H 1.08999 * 109.47093 * 90.00199 * 24 23 19 42 42 H 1.09008 * 109.46979 * 209.99728 * 24 23 19 43 43 H 1.08996 * 109.47640 * 329.99655 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.2691 4.8672 -2.9953 10 1 2.6235 5.1889 -3.4790 11 1 1.4984 3.1717 -4.2179 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 7 5.4967 -1.9729 1.9519 18 6 6.0891 -2.6340 3.1223 19 6 7.5679 -2.8200 2.8992 20 7 8.1291 -3.8628 2.3510 21 6 9.4577 -3.6819 2.3138 22 6 9.7307 -2.4849 2.8672 23 7 8.5322 -1.9377 3.2387 24 6 8.3329 -0.6379 3.8843 25 1 -0.3634 0.4290 -0.9338 26 1 -0.3634 0.5940 0.8385 27 1 -0.3632 -1.0233 0.0953 28 1 1.5610 1.9274 0.8309 29 1 3.0796 1.3445 0.1083 30 1 2.9861 4.9182 -0.7768 31 1 1.8943 -0.1776 2.0496 32 1 1.4350 -1.6951 1.2405 33 1 3.1332 -2.7955 -0.1323 34 1 3.8797 -1.1513 3.0120 35 1 3.5677 -2.7404 2.2732 36 1 5.6864 -2.4932 1.1085 37 1 5.9303 -2.0176 4.0071 38 1 5.6182 -3.6063 3.2676 39 1 10.1818 -4.3764 1.9143 40 1 10.7075 -2.0420 2.9941 41 1 8.3663 -0.7609 4.9668 42 1 9.1210 0.0475 3.5721 43 1 7.3634 -0.2329 3.5944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327977660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:54 Heat of formation + Delta-G solvation = 21.177260 kcal Electronic energy + Delta-G solvation = -22040.125727 eV Core-core repulsion = 18735.669583 eV Total energy + Delta-G solvation = -3304.456144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.16442 -38.25567 -36.07962 -34.95558 -34.09746 -32.46442 -30.97112 -29.17767 -27.37032 -27.19603 -26.25921 -24.40860 -23.10416 -21.55592 -21.46768 -20.11440 -19.82723 -17.39557 -16.55447 -16.12593 -16.07008 -15.82723 -14.96625 -14.79830 -14.62808 -14.43130 -14.01594 -13.98825 -13.55179 -13.27937 -13.17562 -12.92940 -12.81449 -12.40712 -12.15527 -11.96534 -11.81870 -11.36776 -11.14366 -10.92015 -10.68782 -10.64343 -10.33006 -10.09886 -9.73408 -9.71918 -9.61695 -9.11677 -8.67574 -8.41581 -8.38899 -7.18604 -5.99255 -3.99403 1.88170 2.67081 2.99334 3.34620 3.40735 3.46280 4.02523 4.41114 4.47524 4.56771 4.65635 4.75811 4.92333 4.93253 5.08835 5.20527 5.29926 5.32328 5.35283 5.37958 5.41208 5.56976 5.63613 5.72029 5.78493 6.04456 6.09351 6.16379 6.35727 6.53192 6.63348 6.72130 6.82522 7.04471 7.28643 7.31901 7.33318 7.83226 7.99167 8.08443 8.14078 8.23554 8.58619 9.07756 9.64369 11.11875 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.003301 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.256709 B = 8479.161235 C = 9271.499258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.532 5.532 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.027 3.973 13 C 0.115 3.885 14 H 0.113 0.887 15 O -0.542 6.542 16 C 0.030 3.970 17 N -0.681 5.681 18 C 0.143 3.857 19 C 0.212 3.788 20 N -0.490 5.490 21 C -0.030 4.030 22 C -0.059 4.059 23 N -0.448 5.448 24 C 0.069 3.931 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.042 0.958 28 H -0.012 1.012 29 H 0.033 0.967 30 H 0.260 0.740 31 H 0.031 0.969 32 H 0.060 0.940 33 H 0.360 0.640 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.357 0.643 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.169 0.831 40 H 0.173 0.827 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.093 -12.488 11.878 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.102 4.102 13 C 0.055 3.945 14 H 0.131 0.869 15 O -0.345 6.345 16 C -0.100 4.100 17 N -0.314 5.314 18 C 0.013 3.987 19 C -0.051 4.051 20 N -0.210 5.210 21 C -0.179 4.179 22 C -0.193 4.193 23 N -0.130 5.130 24 C -0.074 4.074 25 H 0.090 0.910 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.006 0.994 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.205 0.795 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.177 0.823 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.186 0.814 40 H 0.190 0.810 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.414 -11.937 11.248 18.911 hybrid contribution -0.497 0.481 0.468 0.835 sum 8.917 -11.456 11.716 18.655 Atomic orbital electron populations 1.22185 0.88849 0.98552 1.01164 1.62047 1.06517 1.17899 1.39170 1.19793 0.95575 0.81399 0.96520 1.21155 1.34551 0.96780 1.01721 0.91918 1.24980 0.95337 0.97382 0.96966 1.69955 1.38564 1.11380 1.34127 0.86505 0.77886 0.79213 0.83881 1.20837 1.21273 1.19722 1.22663 0.95713 0.98182 0.93680 1.22010 0.94701 0.93990 0.83837 0.86886 1.86715 1.76135 1.30556 1.41074 1.22714 0.87316 0.99543 1.00385 1.60408 1.12323 1.53907 1.04808 1.20160 0.84883 0.98752 0.94942 1.23045 0.92841 0.87039 1.02167 1.70221 1.07565 1.24019 1.19155 1.22266 0.92779 0.97089 1.05734 1.22718 0.90252 0.98014 1.08274 1.45235 1.06704 1.16293 1.44757 1.22118 1.05269 0.82212 0.97778 0.90956 0.97022 0.93951 0.99402 0.94944 0.93021 0.95096 0.92183 0.79486 0.90226 0.94897 0.82279 0.89736 0.92126 0.81404 0.80956 0.90746 0.89550 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.32 60.07 0.56 1.36 16 2 N -0.53 -11.51 4.66 -244.37 -1.14 -12.65 16 3 C 0.19 5.04 4.57 -4.97 -0.02 5.02 16 4 C -0.50 -14.42 8.58 -34.44 -0.30 -14.72 16 5 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.03 0.47 4.61 -3.83 -0.02 0.45 16 13 C 0.11 1.85 3.26 -26.73 -0.09 1.76 16 14 H 0.11 2.26 6.46 -51.93 -0.34 1.93 16 15 O -0.54 -9.05 12.81 -35.23 -0.45 -9.50 16 16 C 0.03 0.37 5.36 -3.82 -0.02 0.35 16 17 N -0.68 -8.62 6.49 -115.06 -0.75 -9.37 16 18 C 0.14 1.56 5.78 -4.97 -0.03 1.53 16 19 C 0.21 2.67 7.41 -155.42 -1.15 1.51 16 20 N -0.49 -6.93 11.25 -10.82 -0.12 -7.06 16 21 C -0.03 -0.35 11.87 -17.81 -0.21 -0.57 16 22 C -0.06 -0.60 11.58 -16.56 -0.19 -0.79 16 23 N -0.45 -4.84 3.15 -121.27 -0.38 -5.22 16 24 C 0.07 0.52 10.79 59.85 0.65 1.17 16 25 H 0.07 1.50 7.02 -51.93 -0.36 1.14 16 26 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 27 H 0.04 0.68 7.88 -51.93 -0.41 0.28 16 28 H -0.01 -0.33 8.07 -51.93 -0.42 -0.75 16 29 H 0.03 0.91 6.34 -51.93 -0.33 0.58 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 32 H 0.06 0.87 7.82 -51.93 -0.41 0.46 16 33 H 0.36 4.50 9.05 45.56 0.41 4.91 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.36 5.02 8.28 -39.29 -0.33 4.69 16 37 H 0.08 0.77 7.70 -51.93 -0.40 0.37 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.10 0.81 7.66 -51.93 -0.40 0.42 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -34.38 355.71 -8.96 -43.34 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.28 Total: 5.80 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -0.92 Total: -1.47 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -1.65 Total: -60.53 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.45 Total: -9.50 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.38 -8.96 -43.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327977660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.520 kcal (2) G-P(sol) polarization free energy of solvation -34.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds