Wall clock time and date at job start Fri Apr 10 2020 14:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.46844 * 90.00277 * 8 6 4 10 10 H 1.48497 * 109.47088 * 210.00471 * 8 6 4 11 11 H 1.48503 * 109.46723 * 330.00198 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 N 1.46904 * 109.47085 * 184.99848 * 16 13 12 18 18 C 1.46902 * 110.99534 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.46547 * 180.02562 * 18 17 16 20 20 N 1.30498 * 125.64813 * 269.68796 * 19 18 17 21 21 C 1.34130 * 109.25956 * 179.89771 * 20 19 18 22 22 C 1.34670 * 108.01717 * 0.36951 * 21 20 19 23 23 N 1.35038 * 125.65322 * 89.99902 * 19 18 17 24 24 C 1.46501 * 126.39451 * 359.97438 * 23 19 18 25 25 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 26 26 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 27 27 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 28 28 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 29 29 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 30 30 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 32 32 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 33 33 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 34 34 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 35 35 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 36 36 H 1.00901 * 111.00111 * 303.95536 * 17 16 13 37 37 H 1.08997 * 109.47417 * 299.99878 * 18 17 16 38 38 H 1.08997 * 109.47488 * 60.00619 * 18 17 16 39 39 H 1.07994 * 125.99346 * 180.11668 * 21 20 19 40 40 H 1.08001 * 126.59540 * 179.74525 * 22 21 20 41 41 H 1.08999 * 109.47093 * 90.00199 * 24 23 19 42 42 H 1.09008 * 109.46979 * 209.99728 * 24 23 19 43 43 H 1.08996 * 109.47640 * 329.99655 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.2691 4.8672 -2.9953 10 1 2.6235 5.1889 -3.4790 11 1 1.4984 3.1717 -4.2179 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 7 5.4967 -1.9729 1.9519 18 6 6.0891 -2.6340 3.1223 19 6 7.5679 -2.8200 2.8992 20 7 8.1291 -3.8628 2.3510 21 6 9.4577 -3.6819 2.3138 22 6 9.7307 -2.4849 2.8672 23 7 8.5322 -1.9377 3.2387 24 6 8.3329 -0.6379 3.8843 25 1 -0.3634 0.4290 -0.9338 26 1 -0.3634 0.5940 0.8385 27 1 -0.3632 -1.0233 0.0953 28 1 1.5610 1.9274 0.8309 29 1 3.0796 1.3445 0.1083 30 1 2.9861 4.9182 -0.7768 31 1 1.8943 -0.1776 2.0496 32 1 1.4350 -1.6951 1.2405 33 1 3.1332 -2.7955 -0.1323 34 1 3.8797 -1.1513 3.0120 35 1 3.5677 -2.7404 2.2732 36 1 5.6864 -2.4932 1.1085 37 1 5.9303 -2.0176 4.0071 38 1 5.6182 -3.6063 3.2676 39 1 10.1818 -4.3764 1.9143 40 1 10.7075 -2.0420 2.9941 41 1 8.3663 -0.7609 4.9668 42 1 9.1210 0.0475 3.5721 43 1 7.3634 -0.2329 3.5944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327977660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:01:53 Heat of formation + Delta-G solvation = -7.097148 kcal Electronic energy + Delta-G solvation = -22041.351797 eV Core-core repulsion = 18735.669583 eV Total energy + Delta-G solvation = -3305.682214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.98600 -39.58818 -37.51449 -36.16711 -34.88124 -34.59923 -32.03320 -30.36684 -29.29733 -28.03023 -27.33771 -25.88397 -24.63230 -22.81722 -22.29470 -21.72110 -20.73871 -18.62195 -18.21147 -17.38787 -17.15846 -16.81366 -16.57751 -16.20081 -15.89374 -15.62829 -15.19881 -15.10295 -14.84366 -14.66652 -14.14969 -13.95864 -13.85946 -13.60799 -13.48819 -13.13264 -13.00067 -12.93748 -12.76273 -12.58499 -12.52568 -12.30326 -12.14762 -11.49711 -11.31371 -10.98881 -10.79642 -10.59404 -10.53990 -9.56645 -9.28681 -8.93005 -8.19688 -6.28701 1.06414 1.39825 1.41974 1.53563 1.94697 2.11168 2.40935 3.00681 3.13061 3.41333 3.59280 3.71400 3.85518 4.00707 4.02910 4.18060 4.32523 4.36561 4.41420 4.43436 4.50110 4.61181 4.62276 4.64540 4.72830 4.78284 4.80088 4.82999 5.09029 5.13562 5.26748 5.33039 5.37043 5.65896 5.83368 5.91449 6.08396 6.22392 6.28172 6.36601 6.67407 6.87081 7.05997 7.13928 7.40517 8.91379 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.003301 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.256709 B = 8479.161235 C = 9271.499258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.546 5.546 3 C 0.210 3.790 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.268 1.268 12 C 0.028 3.972 13 C 0.123 3.877 14 H 0.064 0.936 15 O -0.563 6.563 16 C 0.045 3.955 17 N -0.692 5.692 18 C 0.149 3.851 19 C 0.191 3.809 20 N -0.527 5.527 21 C -0.059 4.059 22 C -0.051 4.051 23 N -0.451 5.451 24 C 0.065 3.935 25 H 0.052 0.948 26 H 0.008 0.992 27 H 0.083 0.917 28 H -0.040 1.040 29 H 0.005 0.995 30 H 0.264 0.736 31 H 0.032 0.968 32 H 0.098 0.902 33 H 0.380 0.620 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.347 0.653 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.184 0.816 40 H 0.207 0.793 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.911 -13.130 12.337 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.270 5.270 3 C 0.084 3.916 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.197 4.197 7 N -0.574 5.574 8 Si 0.792 3.208 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.192 1.192 12 C -0.101 4.101 13 C 0.063 3.937 14 H 0.082 0.918 15 O -0.369 6.369 16 C -0.085 4.085 17 N -0.325 5.325 18 C 0.019 3.981 19 C -0.072 4.072 20 N -0.247 5.247 21 C -0.207 4.207 22 C -0.185 4.185 23 N -0.133 5.133 24 C -0.077 4.077 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.101 0.899 28 H -0.022 1.022 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.116 0.884 33 H 0.228 0.772 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.166 0.834 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.201 0.799 40 H 0.224 0.776 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.211 -12.596 11.732 19.523 hybrid contribution -0.398 0.630 0.349 0.823 sum 8.813 -11.966 12.080 19.152 Atomic orbital electron populations 1.22203 0.87441 1.00882 1.00037 1.61934 1.07925 1.15232 1.41901 1.19387 0.93825 0.83808 0.94613 1.21488 1.34692 0.97456 1.02576 0.92298 1.25894 0.95065 0.98095 1.00640 1.70077 1.39401 1.11812 1.36141 0.85416 0.78044 0.78073 0.79305 1.19578 1.20680 1.19215 1.22789 0.96507 0.98896 0.91933 1.21746 0.93830 0.92761 0.85380 0.91762 1.86661 1.76760 1.31765 1.41738 1.22522 0.87170 1.00489 0.98317 1.60380 1.12688 1.54366 1.05112 1.20186 0.84114 0.99174 0.94588 1.23285 0.93702 0.87402 1.02836 1.70155 1.08915 1.25387 1.20253 1.22714 0.92510 0.98549 1.06936 1.23281 0.91315 0.97383 1.06520 1.45491 1.06587 1.16895 1.44319 1.22317 1.05312 0.81098 0.98945 0.92887 0.97298 0.89864 1.02213 0.97665 0.92741 0.94996 0.88366 0.77227 0.89265 0.92153 0.83437 0.87932 0.91643 0.79868 0.77618 0.88525 0.88029 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.32 127.69 1.19 2.80 16 2 N -0.55 -23.59 4.66 -927.06 -4.32 -27.90 16 3 C 0.21 11.40 4.57 85.56 0.39 11.80 16 4 C -0.52 -30.66 8.58 25.60 0.22 -30.44 16 5 H 0.06 3.41 7.10 -2.92 -0.02 3.39 16 6 C 0.00 0.05 5.46 84.66 0.46 0.51 16 7 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 8 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 C 0.03 0.91 4.61 86.30 0.40 1.31 16 13 C 0.12 3.95 3.26 30.59 0.10 4.05 16 14 H 0.06 2.72 6.46 -2.39 -0.02 2.70 16 15 O -0.56 -18.55 12.81 -148.98 -1.91 -20.46 16 16 C 0.04 1.02 5.36 86.30 0.46 1.49 16 17 N -0.69 -17.21 6.49 -517.93 -3.36 -20.57 16 18 C 0.15 3.10 5.78 85.56 0.49 3.59 16 19 C 0.19 4.69 7.41 138.13 1.02 5.72 16 20 N -0.53 -14.88 11.25 -188.14 -2.12 -17.00 16 21 C -0.06 -1.37 11.87 83.52 0.99 -0.38 16 22 C -0.05 -0.96 11.58 83.09 0.96 0.00 16 23 N -0.45 -9.20 3.15 -537.60 -1.69 -10.89 16 24 C 0.06 0.87 10.79 127.77 1.38 2.25 16 25 H 0.05 2.18 7.02 -2.39 -0.02 2.16 16 26 H 0.01 0.33 8.07 -2.39 -0.02 0.31 16 27 H 0.08 2.45 7.88 -2.39 -0.02 2.43 16 28 H -0.04 -2.32 8.07 -2.39 -0.02 -2.34 16 29 H 0.01 0.32 6.34 -2.39 -0.02 0.30 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.03 1.05 8.05 -2.39 -0.02 1.03 16 32 H 0.10 2.48 7.82 -2.39 -0.02 2.46 16 33 H 0.38 8.81 9.05 -74.06 -0.67 8.14 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.35 9.79 8.28 -89.69 -0.74 9.05 16 37 H 0.10 1.70 7.70 -2.39 -0.02 1.68 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.18 3.29 8.06 -2.91 -0.02 3.26 16 40 H 0.21 2.22 8.06 -2.91 -0.02 2.20 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.09 1.38 7.66 -2.39 -0.02 1.36 16 Total: -1.00 -76.66 355.71 -3.42 -80.08 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -0.41 Total: 23.43 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 8.07 Total: 2.69 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -11.20 Total: -133.19 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -1.91 Total: -20.46 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -76.66 -3.42 -80.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327977660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.978 kcal (2) G-P(sol) polarization free energy of solvation -76.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds