Wall clock time and date at job start Fri Apr 10 2020 14:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48506 * 109.47098 * 270.00028 * 3 2 1 5 5 H 1.48500 * 109.47233 * 29.99790 * 3 2 1 6 6 H 1.48496 * 109.47481 * 150.00040 * 3 2 1 7 7 C 1.37878 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99935 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00043 * 0.02562 * 7 2 1 10 10 O 1.42107 * 106.40015 * 66.45470 * 9 7 2 11 11 O 1.42097 * 106.40250 * 293.54042 * 9 7 2 12 12 N 1.65596 * 107.21661 * 179.97438 * 9 7 2 13 13 C 1.47125 * 121.35751 * 270.02142 * 12 9 7 14 14 C 1.52787 * 107.95185 * 115.76523 * 13 12 9 15 15 C 1.50591 * 110.82041 * 47.47436 * 14 13 12 16 16 C 1.39468 * 117.62932 * 159.97697 * 15 14 13 17 17 O 1.35899 * 119.76809 * 359.53930 * 16 15 14 18 18 C 1.38412 * 120.46527 * 179.56675 * 16 15 14 19 19 C 1.38169 * 119.76468 * 359.90087 * 18 16 15 20 20 C 1.37988 * 119.77994 * 0.23141 * 19 18 16 21 21 C 1.37576 * 122.88804 * 339.87551 * 15 14 13 22 22 C 1.46677 * 121.33328 * 90.00564 * 12 9 7 23 23 H 0.97000 * 119.99666 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.72287 * 356.15926 * 13 12 9 25 25 H 1.09006 * 109.77582 * 235.39516 * 13 12 9 26 26 H 1.09002 * 109.19946 * 287.14173 * 14 13 12 27 27 H 1.09002 * 109.20089 * 167.80405 * 14 13 12 28 28 H 0.96699 * 113.99784 * 90.00612 * 17 16 15 29 29 H 1.08003 * 120.11697 * 179.97438 * 18 16 15 30 30 H 1.08000 * 120.11442 * 180.25877 * 19 18 16 31 31 H 1.07998 * 119.69022 * 180.02562 * 20 19 18 32 32 H 1.09002 * 109.43814 * 104.32961 * 22 12 9 33 33 H 1.09000 * 109.43520 * 344.45835 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1236 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2495 11 8 0.4510 -2.7950 1.2500 12 7 2.2484 -3.9354 0.0005 13 6 2.7687 -4.4969 -1.2558 14 6 4.2623 -4.1836 -1.3287 15 6 4.9440 -4.5208 -0.0289 16 6 6.3264 -4.7038 -0.0521 17 8 7.0033 -4.5844 -1.2244 18 6 7.0138 -5.0066 1.1105 19 6 6.3258 -5.1265 2.3027 20 6 4.9576 -4.9483 2.3254 21 6 4.2637 -4.6504 1.1598 22 6 2.7664 -4.4952 1.2534 23 1 -0.4850 0.8401 0.0004 24 1 2.2547 -4.0423 -2.1027 25 1 2.6173 -5.5764 -1.2679 26 1 4.3962 -3.1225 -1.5390 27 1 4.7124 -4.7676 -2.1315 28 1 7.3160 -3.6881 -1.4085 29 1 8.0843 -5.1476 1.0861 30 1 6.8570 -5.3586 3.2140 31 1 4.4214 -5.0419 3.2581 32 1 2.3111 -5.4696 1.4308 33 1 2.5220 -3.8258 2.0782 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951731.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:30 Heat of formation + Delta-G solvation = -109.508560 kcal Electronic energy + Delta-G solvation = -20613.482763 eV Core-core repulsion = 17344.434926 eV Total energy + Delta-G solvation = -3269.047837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.11804 -37.24248 -35.83467 -35.31590 -34.00341 -33.11291 -31.78990 -30.81177 -28.49638 -26.14702 -24.75128 -23.43853 -21.97498 -20.17223 -18.53929 -17.99877 -17.33635 -16.38513 -16.08809 -15.55048 -15.41058 -14.97720 -14.63372 -14.21236 -13.73823 -13.50910 -13.30584 -13.28311 -12.44554 -12.20444 -12.04116 -12.01233 -11.61415 -11.42276 -11.24657 -11.10822 -10.98178 -10.63174 -10.44729 -10.33535 -10.20384 -10.03628 -9.26969 -8.97095 -8.54275 -8.42519 -8.21832 -6.71844 -5.33902 1.31831 1.43415 2.20228 3.04328 3.11258 3.17602 3.66947 4.02764 4.27049 4.51894 4.61734 4.86097 4.90248 5.10134 5.23085 5.49484 5.55305 5.60303 5.63951 5.80292 5.90969 5.94434 5.96824 6.11440 6.13654 6.32038 6.41452 6.43250 6.55537 6.58086 6.87031 6.95381 7.30841 7.49334 7.69240 7.96267 8.87140 10.21861 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.006529 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.527579 B = 4287.350545 C = 4691.052905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -1.018 5.018 8 H 0.101 0.899 9 S 2.716 3.284 10 O -1.001 7.001 11 O -1.002 7.002 12 N -1.013 6.013 13 C 0.125 3.875 14 C -0.098 4.098 15 C -0.083 4.083 16 C 0.098 3.902 17 O -0.499 6.499 18 C -0.151 4.151 19 C -0.111 4.111 20 C -0.125 4.125 21 C -0.068 4.068 22 C 0.167 3.833 23 H 0.291 0.709 24 H 0.099 0.901 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.387 0.613 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.509 -7.444 1.355 14.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.084 4.084 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.152 5.152 8 H 0.120 0.880 9 S 2.818 3.182 10 O -0.992 6.992 11 O -0.993 6.993 12 N -0.847 5.847 13 C -0.001 4.001 14 C -0.136 4.136 15 C -0.084 4.084 16 C 0.053 3.947 17 O -0.309 6.309 18 C -0.170 4.170 19 C -0.129 4.129 20 C -0.143 4.143 21 C -0.070 4.070 22 C 0.040 3.960 23 H 0.101 0.899 24 H 0.118 0.882 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.243 0.757 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.092 0.908 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.235 -8.119 1.293 13.922 hybrid contribution 1.312 1.753 0.094 2.191 sum 12.547 -6.366 1.387 14.138 Atomic orbital electron populations 1.69895 1.06764 1.30750 1.40168 1.24744 0.94443 1.00753 0.88503 0.86191 0.80215 0.80151 0.79185 1.19170 1.19921 1.18700 1.30602 1.06077 1.11745 1.66726 0.88032 1.00509 0.72010 0.72882 0.72840 1.93354 1.72620 1.87515 1.45674 1.93356 1.72666 1.87544 1.45709 1.58321 1.61860 1.54827 1.09674 1.21204 0.92706 0.98866 0.87289 1.20778 0.96035 1.02712 0.94087 1.19835 0.92746 1.00131 0.95672 1.18474 0.89708 1.01340 0.85142 1.84765 1.74293 1.34539 1.37262 1.21244 1.00075 1.03546 0.92132 1.20862 0.94196 1.00469 0.97377 1.21119 0.94388 1.00910 0.97897 1.19957 0.96513 0.98154 0.92387 1.20054 0.88379 0.99849 0.87677 0.89858 0.88249 0.91783 0.89809 0.89668 0.75695 0.85867 0.85803 0.85538 0.90805 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.73 13.19 55.43 0.73 -24.00 16 2 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 3 Si 0.92 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 7 C -1.02 -27.78 9.75 30.60 0.30 -27.48 16 8 H 0.10 2.57 7.81 -52.48 -0.41 2.16 16 9 S 2.72 71.64 5.00 -107.50 -0.54 71.10 16 10 O -1.00 -28.82 16.70 -57.17 -0.95 -29.78 16 11 O -1.00 -28.87 16.94 -57.17 -0.97 -29.84 16 12 N -1.01 -20.61 3.26 -115.11 -0.37 -20.98 16 13 C 0.13 2.17 6.45 -3.81 -0.02 2.14 16 14 C -0.10 -1.50 5.51 -28.05 -0.15 -1.65 16 15 C -0.08 -1.29 5.77 -104.46 -0.60 -1.89 16 16 C 0.10 1.34 6.66 -39.06 -0.26 1.08 16 17 O -0.50 -6.01 12.46 -19.42 -0.24 -6.25 16 18 C -0.15 -1.86 9.98 -39.54 -0.39 -2.25 16 19 C -0.11 -1.31 10.05 -39.70 -0.40 -1.71 16 20 C -0.12 -1.65 9.62 -39.43 -0.38 -2.03 16 21 C -0.07 -1.08 5.82 -104.56 -0.61 -1.69 16 22 C 0.17 2.91 6.09 -5.04 -0.03 2.88 16 23 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.10 1.78 7.03 -51.93 -0.37 1.42 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.08 1.14 7.65 -51.93 -0.40 0.74 16 28 H 0.39 3.07 9.06 45.56 0.41 3.49 16 29 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.13 1.40 8.05 -52.49 -0.42 0.98 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.83 7.41 -51.93 -0.39 1.45 16 LS Contribution 295.45 15.07 4.45 4.45 Total: -1.00 -35.32 295.45 -8.38 -43.71 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -2.82 Total: 5.15 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -2.65 Total: -28.99 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.36 Total: -44.98 kcal Atomic # 8 Polarization: -63.70 SS G_CDS: -2.17 Total: -65.87 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 71.64 SS G_CDS: -0.54 Total: 71.10 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.32 -8.38 -43.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951731.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.802 kcal (2) G-P(sol) polarization free energy of solvation -35.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds