Wall clock time and date at job start Fri Apr 10 2020 14:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00288 * 2 1 4 4 H 1.48495 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46991 * 300.00154 * 3 2 1 6 6 H 1.48505 * 109.46634 * 60.00115 * 3 2 1 7 7 C 1.37877 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00064 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00124 * 359.97438 * 7 2 1 10 10 O 1.42097 * 106.40122 * 66.46367 * 9 7 2 11 11 O 1.42092 * 106.40352 * 293.54157 * 9 7 2 12 12 N 1.65606 * 107.21616 * 180.02562 * 9 7 2 13 13 C 1.46500 * 120.00129 * 65.00431 * 12 9 7 14 14 C 1.50694 * 109.47141 * 164.99651 * 13 12 9 15 15 C 1.38291 * 120.11946 * 89.99957 * 14 13 12 16 16 C 1.37929 * 120.35446 * 180.17130 * 15 14 13 17 17 C 1.39289 * 120.24278 * 0.06555 * 16 15 14 18 18 C 1.38981 * 118.85498 * 359.58943 * 17 16 15 19 19 C 1.37660 * 120.77699 * 0.54611 * 18 17 16 20 20 C 1.51649 * 106.97907 * 180.57567 * 18 17 16 21 21 C 1.54713 * 101.93881 * 15.71381 * 20 18 17 22 22 O 1.36126 * 129.87617 * 179.56466 * 17 16 15 23 23 H 0.97000 * 119.99630 * 0.02562 * 1 2 3 24 24 H 0.96999 * 119.99694 * 244.99842 * 12 9 7 25 25 H 1.09002 * 109.46903 * 44.99264 * 13 12 9 26 26 H 1.09006 * 109.46740 * 284.99865 * 13 12 9 27 27 H 1.08007 * 119.81963 * 0.19443 * 15 14 13 28 28 H 1.07996 * 119.87833 * 180.02562 * 16 15 14 29 29 H 1.08003 * 119.98294 * 179.61345 * 19 18 17 30 30 H 1.09002 * 110.94508 * 257.54041 * 20 18 17 31 31 H 1.08997 * 110.93949 * 133.88365 * 20 18 17 32 32 H 1.09003 * 110.74698 * 92.94680 * 21 20 18 33 33 H 1.09001 * 110.74689 * 216.11069 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1234 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2500 11 8 0.4518 -2.7955 1.2493 12 7 2.2483 -3.9354 -0.0005 13 6 3.1393 -4.1089 1.1494 14 6 3.7945 -5.4640 1.0771 15 6 4.9990 -5.6181 0.4153 16 6 5.6012 -6.8568 0.3432 17 6 5.0001 -7.9647 0.9359 18 6 3.7934 -7.7956 1.6043 19 6 3.1931 -6.5586 1.6724 20 6 3.3952 -9.1534 2.1499 21 6 4.7206 -9.9439 2.0393 22 8 5.4104 -9.2620 0.9781 23 1 -0.4849 0.8401 -0.0004 24 1 2.3171 -4.5325 -0.7619 25 1 2.5621 -4.0330 2.0709 26 1 3.9054 -3.3336 1.1356 27 1 5.4707 -4.7636 -0.0473 28 1 6.5420 -6.9683 -0.1753 29 1 2.2522 -6.4430 2.1898 30 1 2.6181 -9.6077 1.5352 31 1 3.0729 -9.0767 3.1883 32 1 5.2857 -9.8823 2.9693 33 1 4.5290 -10.9836 1.7736 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192993609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:22 Heat of formation + Delta-G solvation = -101.964546 kcal Electronic energy + Delta-G solvation = -19540.701913 eV Core-core repulsion = 16271.981208 eV Total energy + Delta-G solvation = -3268.720704 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14896 -37.98013 -35.20935 -34.28606 -33.92798 -33.05908 -32.77442 -30.04437 -29.29249 -26.12322 -25.22220 -23.42895 -21.99573 -20.94417 -18.99256 -17.49241 -17.39472 -16.78716 -16.41081 -16.17715 -15.65144 -14.79544 -14.40859 -14.17429 -14.05791 -13.65269 -13.31472 -13.29672 -13.04675 -12.62809 -12.42620 -11.98241 -11.94167 -11.67481 -11.22783 -11.21630 -10.97317 -10.77101 -10.57785 -10.31149 -10.27201 -10.17328 -9.24884 -9.01196 -8.90696 -8.47628 -8.10537 -6.69172 -5.30900 1.22836 1.32824 2.39605 3.06364 3.12631 3.14955 3.21804 3.66144 4.08468 4.26912 4.41414 4.65319 4.74344 4.82478 4.87520 4.98662 5.16207 5.18139 5.37868 5.48359 5.56355 5.61766 5.70377 5.87819 6.02912 6.11215 6.24742 6.33726 6.48713 6.56144 6.70111 6.85161 7.12150 7.33280 7.91693 7.99850 8.90274 10.25009 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.003927 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.842271 B = 7128.839548 C = 7531.338936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.021 5.021 8 H 0.103 0.897 9 S 2.715 3.285 10 O -1.006 7.006 11 O -1.008 7.008 12 N -1.134 6.134 13 C 0.170 3.830 14 C -0.113 4.113 15 C -0.070 4.070 16 C -0.140 4.140 17 C 0.099 3.901 18 C -0.179 4.179 19 C -0.053 4.053 20 C -0.110 4.110 21 C 0.052 3.948 22 O -0.308 6.308 23 H 0.290 0.710 24 H 0.403 0.597 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.136 0.864 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.541 -14.625 4.343 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.744 3.256 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.154 5.154 8 H 0.121 0.879 9 S 2.815 3.185 10 O -0.997 6.997 11 O -0.997 6.997 12 N -0.888 5.888 13 C 0.043 3.957 14 C -0.115 4.115 15 C -0.089 4.089 16 C -0.158 4.158 17 C 0.054 3.946 18 C -0.180 4.180 19 C -0.071 4.071 20 C -0.147 4.147 21 C -0.023 4.023 22 O -0.222 6.222 23 H 0.100 0.900 24 H 0.233 0.767 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.154 0.846 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.557 -14.677 4.398 18.058 hybrid contribution 0.899 0.883 -0.236 1.282 sum 10.456 -13.794 4.162 17.802 Atomic orbital electron populations 1.69908 1.06796 1.30606 1.40205 1.24753 0.94453 1.00848 0.88499 0.86133 0.80446 0.80441 0.78533 1.18607 1.19646 1.19633 1.30590 1.06162 1.11883 1.66756 0.87878 1.00400 0.72083 0.73229 0.72809 1.93375 1.73051 1.87631 1.45623 1.93350 1.72895 1.87525 1.45973 1.56054 1.55547 1.51045 1.26166 1.19914 0.93241 0.92370 0.90127 1.19955 0.95814 0.95750 0.99986 1.20896 0.94584 0.96446 0.96942 1.20220 1.01318 0.89678 1.04602 1.19606 0.92959 0.84681 0.97324 1.20718 0.96559 0.95487 1.05191 1.20304 0.99128 0.90020 0.97689 1.21782 0.98243 0.91898 1.02776 1.23803 0.91340 0.97078 0.90072 1.86797 1.64766 1.18975 1.51695 0.89959 0.76651 0.89888 0.91182 0.84611 0.85495 0.85268 0.89184 0.89036 0.90661 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.80 13.19 55.43 0.73 -24.06 16 2 C 0.13 3.67 5.46 -17.82 -0.10 3.57 16 3 Si 0.92 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 7 C -1.02 -27.71 9.72 30.60 0.30 -27.41 16 8 H 0.10 2.54 7.81 -52.48 -0.41 2.13 16 9 S 2.71 71.14 5.02 -107.50 -0.54 70.60 16 10 O -1.01 -29.46 18.02 -57.18 -1.03 -30.49 16 11 O -1.01 -29.00 17.49 -57.18 -1.00 -30.00 16 12 N -1.13 -22.18 5.99 -11.66 -0.07 -22.25 16 13 C 0.17 2.83 6.35 -5.20 -0.03 2.80 16 14 C -0.11 -1.62 5.28 -104.56 -0.55 -2.17 16 15 C -0.07 -0.89 9.68 -39.68 -0.38 -1.27 16 16 C -0.14 -1.71 10.06 -39.30 -0.40 -2.11 16 17 C 0.10 1.28 7.04 -38.92 -0.27 1.01 16 18 C -0.18 -2.22 6.27 -104.09 -0.65 -2.88 16 19 C -0.05 -0.71 9.69 -39.75 -0.39 -1.10 16 20 C -0.11 -0.99 7.11 -26.51 -0.19 -1.18 16 21 C 0.05 0.43 8.01 38.06 0.30 0.73 16 22 O -0.31 -3.72 11.10 -20.14 -0.22 -3.94 16 23 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.40 7.05 8.64 -34.47 -0.30 6.75 16 25 H 0.08 1.42 7.70 -51.93 -0.40 1.02 16 26 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 27 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 28 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 303.65 15.07 4.58 4.58 Total: -1.00 -35.72 303.65 -8.56 -44.28 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.62 Total: 5.91 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: -2.36 Total: -30.00 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.66 Total: -46.32 kcal Atomic # 8 Polarization: -62.17 SS G_CDS: -2.25 Total: -64.43 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 71.14 SS G_CDS: -0.54 Total: 70.60 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.72 -8.56 -44.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.683 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds