Wall clock time and date at job start Fri Apr 10 2020 14:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99957 * 2 1 4 4 H 1.48497 * 109.47163 * 270.00211 * 3 2 1 5 5 H 1.48501 * 109.47097 * 30.00115 * 3 2 1 6 6 H 1.48506 * 109.46950 * 150.00027 * 3 2 1 7 7 C 1.37879 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00464 * 359.97438 * 7 2 1 9 9 S 1.76208 * 119.99592 * 180.02562 * 7 2 1 10 10 O 1.42094 * 106.40530 * 66.46207 * 9 7 2 11 11 O 1.42105 * 106.40000 * 293.53551 * 9 7 2 12 12 N 1.65600 * 107.21672 * 179.97438 * 9 7 2 13 13 C 1.46508 * 120.00075 * 64.99640 * 12 9 7 14 14 H 1.08995 * 109.42108 * 334.88046 * 13 12 9 15 15 C 1.52968 * 109.41991 * 94.70530 * 13 12 9 16 16 O 1.42885 * 108.40677 * 169.27752 * 15 13 12 17 17 C 1.42722 * 113.34079 * 289.26322 * 16 15 13 18 18 C 1.50651 * 110.13404 * 51.81763 * 17 16 15 19 19 C 1.38644 * 118.72216 * 164.02645 * 18 17 16 20 20 C 1.38046 * 120.30690 * 179.81005 * 19 18 17 21 21 C 1.38264 * 119.89627 * 359.97152 * 20 19 18 22 22 C 1.38067 * 119.86259 * 0.08916 * 21 20 19 23 23 C 1.37908 * 121.50531 * 343.97697 * 18 17 16 24 24 H 0.96996 * 120.00352 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00242 * 245.00568 * 12 9 7 26 26 H 1.09001 * 109.63255 * 289.00933 * 15 13 12 27 27 H 1.08993 * 109.63875 * 49.41362 * 15 13 12 28 28 H 1.09002 * 109.33878 * 291.65340 * 17 16 15 29 29 H 1.09003 * 109.33686 * 171.98063 * 17 16 15 30 30 H 1.08003 * 119.84007 * 359.79055 * 19 18 17 31 31 H 1.07996 * 120.05500 * 179.97438 * 20 19 18 32 32 H 1.07998 * 120.07022 * 180.11732 * 21 20 19 33 33 H 1.08001 * 119.86577 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7666 -1.1940 0.0001 10 8 4.1674 -0.6505 1.2503 11 8 4.1682 -0.6488 -1.2492 12 7 4.2568 -2.7758 0.0000 13 6 3.9618 -3.6340 -1.1502 14 1 3.0847 -3.2517 -1.6722 15 6 5.1585 -3.6366 -2.1030 16 8 4.9570 -4.6617 -3.0777 17 6 5.0816 -5.9802 -2.5457 18 6 4.2072 -6.1331 -1.3285 19 6 3.9255 -7.4096 -0.8666 20 6 3.1311 -7.5874 0.2483 21 6 2.6139 -6.4881 0.9085 22 6 2.8926 -5.2164 0.4489 23 6 3.6883 -5.0371 -0.6717 24 1 -0.4850 0.8400 0.0004 25 1 4.7391 -3.1342 0.7614 26 1 5.2345 -2.6685 -2.5982 27 1 6.0724 -3.8341 -1.5428 28 1 6.1203 -6.1611 -2.2691 29 1 4.7780 -6.7046 -3.3015 30 1 4.3292 -8.2687 -1.3816 31 1 2.9138 -8.5836 0.6044 32 1 1.9936 -6.6239 1.7821 33 1 2.4890 -4.3576 0.9648 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995528.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:50 Heat of formation + Delta-G solvation = -97.202933 kcal Electronic energy + Delta-G solvation = -20581.211321 eV Core-core repulsion = 17312.697095 eV Total energy + Delta-G solvation = -3268.514225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28473 -37.46603 -35.74601 -35.11500 -34.49175 -33.06773 -31.65210 -30.52784 -28.53089 -26.45754 -25.35394 -23.55267 -21.95967 -20.13644 -19.24084 -17.60589 -17.22311 -16.82591 -16.33095 -15.64367 -15.45142 -15.22967 -14.98710 -14.16750 -13.93933 -13.63399 -13.43972 -13.16251 -13.05100 -12.86195 -12.41733 -12.16624 -11.65150 -11.55895 -11.39145 -11.05783 -10.83439 -10.68259 -10.56019 -10.46584 -10.06458 -9.89158 -9.27722 -9.23743 -8.83469 -8.66008 -8.47654 -6.83359 -5.38650 1.31379 1.41861 2.00970 3.05398 3.16159 3.24537 3.75146 3.87050 3.93132 4.35051 4.56695 4.65831 4.70961 4.92599 5.01657 5.19654 5.24871 5.31673 5.34815 5.39763 5.59057 5.69919 5.80907 5.98566 6.02701 6.09998 6.17806 6.41052 6.44715 6.56985 6.70775 7.03634 7.19284 7.43732 7.61731 8.16226 8.67054 10.28726 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024474 B = 0.006231 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.800559 B = 4492.631137 C = 5035.708066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.154 3.846 3 Si 0.802 3.198 4 H -0.245 1.245 5 H -0.255 1.255 6 H -0.221 1.221 7 C -1.017 5.017 8 H 0.122 0.878 9 S 2.672 3.328 10 O -1.006 7.006 11 O -1.007 7.007 12 N -1.113 6.113 13 C 0.169 3.831 14 H 0.113 0.887 15 C 0.044 3.956 16 O -0.370 6.370 17 C 0.099 3.901 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.097 4.097 23 C -0.078 4.078 24 H 0.281 0.719 25 H 0.407 0.593 26 H 0.118 0.882 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.295 -13.462 -1.305 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.066 4.066 3 Si 0.622 3.378 4 H -0.169 1.169 5 H -0.179 1.179 6 H -0.143 1.143 7 C -1.151 5.151 8 H 0.140 0.860 9 S 2.774 3.226 10 O -0.996 6.996 11 O -0.997 6.997 12 N -0.868 5.868 13 C 0.061 3.939 14 H 0.131 0.869 15 C -0.035 4.035 16 O -0.287 6.287 17 C 0.022 3.978 18 C -0.116 4.116 19 C -0.138 4.138 20 C -0.138 4.138 21 C -0.139 4.139 22 C -0.115 4.115 23 C -0.080 4.080 24 H 0.092 0.908 25 H 0.239 0.761 26 H 0.136 0.864 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.579 -12.515 -1.681 14.728 hybrid contribution -0.393 0.109 0.770 0.872 sum 7.186 -12.406 -0.911 14.366 Atomic orbital electron populations 1.69981 1.06588 1.29108 1.39290 1.24413 0.94780 0.98793 0.88590 0.87861 0.83535 0.84545 0.81899 1.16898 1.17900 1.14280 1.30419 1.15400 1.02239 1.67049 0.86005 1.01501 0.77461 0.70267 0.73405 1.93484 1.85541 1.75612 1.44951 1.93418 1.85036 1.75796 1.45463 1.55662 1.73800 1.31230 1.26156 1.20040 0.99527 0.87599 0.86739 0.86925 1.23252 0.96573 0.92622 0.91012 1.88022 1.92442 1.13850 1.34426 1.21459 0.97239 0.85814 0.93269 1.20294 0.99648 0.93327 0.98299 1.20891 0.99593 0.95902 0.97407 1.21067 0.98102 0.98713 0.95946 1.21174 1.00047 0.92532 1.00156 1.21303 0.96491 0.97954 0.95766 1.19768 0.98041 0.94253 0.95935 0.90844 0.76084 0.86416 0.92376 0.91833 0.87833 0.86069 0.86157 0.85869 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.39 13.96 55.43 0.77 -22.61 16 2 C 0.15 4.35 5.47 -17.82 -0.10 4.26 16 3 Si 0.80 20.32 26.54 -169.99 -4.51 15.81 16 4 H -0.25 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.25 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.22 -5.69 5.61 56.52 0.32 -5.37 16 7 C -1.02 -27.55 10.11 30.60 0.31 -27.24 16 8 H 0.12 3.31 8.06 -52.49 -0.42 2.89 16 9 S 2.67 64.27 4.15 -107.50 -0.45 63.83 16 10 O -1.01 -26.23 16.02 -57.17 -0.92 -27.15 16 11 O -1.01 -25.72 16.31 -57.17 -0.93 -26.65 16 12 N -1.11 -20.55 4.75 -5.87 -0.03 -20.58 16 13 C 0.17 2.94 2.92 -69.07 -0.20 2.74 16 14 H 0.11 2.15 7.84 -51.93 -0.41 1.74 16 15 C 0.04 0.69 6.45 37.14 0.24 0.93 16 16 O -0.37 -5.60 10.77 -35.23 -0.38 -5.98 16 17 C 0.10 1.17 6.67 35.98 0.24 1.41 16 18 C -0.11 -1.53 5.80 -104.62 -0.61 -2.14 16 19 C -0.12 -1.35 9.67 -39.50 -0.38 -1.73 16 20 C -0.12 -1.35 10.05 -39.64 -0.40 -1.75 16 21 C -0.12 -1.55 10.05 -39.63 -0.40 -1.95 16 22 C -0.10 -1.48 9.22 -39.51 -0.36 -1.84 16 23 C -0.08 -1.22 5.50 -104.59 -0.58 -1.79 16 24 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.41 6.48 8.75 -34.47 -0.30 6.18 16 26 H 0.12 1.98 7.86 -51.93 -0.41 1.57 16 27 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.13 2.18 7.72 -52.49 -0.41 1.78 16 LS Contribution 291.31 15.07 4.39 4.39 Total: -1.00 -32.27 291.31 -7.98 -40.25 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -3.70 Total: 7.80 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -2.24 Total: -29.10 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.75 Total: -43.19 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -2.23 Total: -59.78 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.51 Total: 15.81 kcal Atomic # 16 Polarization: 64.27 SS G_CDS: -0.45 Total: 63.83 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.27 -7.98 -40.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995528.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.952 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds