Wall clock time and date at job start Fri Apr 10 2020 14:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99957 * 2 1 4 4 H 1.48497 * 109.47163 * 270.00211 * 3 2 1 5 5 H 1.48501 * 109.47097 * 30.00115 * 3 2 1 6 6 H 1.48506 * 109.46950 * 150.00027 * 3 2 1 7 7 C 1.37879 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00464 * 359.97438 * 7 2 1 9 9 S 1.76208 * 119.99592 * 180.02562 * 7 2 1 10 10 O 1.42094 * 106.40530 * 66.46207 * 9 7 2 11 11 O 1.42105 * 106.40000 * 293.53551 * 9 7 2 12 12 N 1.65600 * 107.21672 * 179.97438 * 9 7 2 13 13 C 1.46508 * 120.00075 * 64.99640 * 12 9 7 14 14 H 1.08995 * 109.42108 * 334.88046 * 13 12 9 15 15 C 1.52968 * 109.41991 * 94.70530 * 13 12 9 16 16 O 1.42885 * 108.40677 * 169.27752 * 15 13 12 17 17 C 1.42722 * 113.34079 * 289.26322 * 16 15 13 18 18 C 1.50651 * 110.13404 * 51.81763 * 17 16 15 19 19 C 1.38644 * 118.72216 * 164.02645 * 18 17 16 20 20 C 1.38046 * 120.30690 * 179.81005 * 19 18 17 21 21 C 1.38264 * 119.89627 * 359.97152 * 20 19 18 22 22 C 1.38067 * 119.86259 * 0.08916 * 21 20 19 23 23 C 1.37908 * 121.50531 * 343.97697 * 18 17 16 24 24 H 0.96996 * 120.00352 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00242 * 245.00568 * 12 9 7 26 26 H 1.09001 * 109.63255 * 289.00933 * 15 13 12 27 27 H 1.08993 * 109.63875 * 49.41362 * 15 13 12 28 28 H 1.09002 * 109.33878 * 291.65340 * 17 16 15 29 29 H 1.09003 * 109.33686 * 171.98063 * 17 16 15 30 30 H 1.08003 * 119.84007 * 359.79055 * 19 18 17 31 31 H 1.07996 * 120.05500 * 179.97438 * 20 19 18 32 32 H 1.07998 * 120.07022 * 180.11732 * 21 20 19 33 33 H 1.08001 * 119.86577 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7666 -1.1940 0.0001 10 8 4.1674 -0.6505 1.2503 11 8 4.1682 -0.6488 -1.2492 12 7 4.2568 -2.7758 0.0000 13 6 3.9618 -3.6340 -1.1502 14 1 3.0847 -3.2517 -1.6722 15 6 5.1585 -3.6366 -2.1030 16 8 4.9570 -4.6617 -3.0777 17 6 5.0816 -5.9802 -2.5457 18 6 4.2072 -6.1331 -1.3285 19 6 3.9255 -7.4096 -0.8666 20 6 3.1311 -7.5874 0.2483 21 6 2.6139 -6.4881 0.9085 22 6 2.8926 -5.2164 0.4489 23 6 3.6883 -5.0371 -0.6717 24 1 -0.4850 0.8400 0.0004 25 1 4.7391 -3.1342 0.7614 26 1 5.2345 -2.6685 -2.5982 27 1 6.0724 -3.8341 -1.5428 28 1 6.1203 -6.1611 -2.2691 29 1 4.7780 -6.7046 -3.3015 30 1 4.3292 -8.2687 -1.3816 31 1 2.9138 -8.5836 0.6044 32 1 1.9936 -6.6239 1.7821 33 1 2.4890 -4.3576 0.9648 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995528.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:49 Heat of formation + Delta-G solvation = -122.361202 kcal Electronic energy + Delta-G solvation = -20582.302265 eV Core-core repulsion = 17312.697095 eV Total energy + Delta-G solvation = -3269.605170 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37166 -38.53030 -37.73510 -36.55316 -36.51019 -35.21132 -32.65260 -31.69782 -29.76079 -28.59733 -26.37231 -24.72438 -23.01611 -21.42541 -21.01230 -19.52449 -18.78615 -18.36579 -17.62393 -17.06940 -16.86986 -16.53482 -16.20996 -15.81496 -15.44075 -15.10682 -15.01230 -14.79315 -14.48995 -14.12831 -13.58822 -13.48811 -13.33552 -13.17573 -12.90337 -12.73600 -12.65472 -12.56578 -12.00680 -11.86650 -11.69572 -11.38962 -11.35387 -11.04525 -10.29721 -9.69659 -9.57816 -8.98199 -7.55226 0.01388 0.37650 0.42956 1.03986 1.13723 1.20101 1.87594 2.36974 2.43756 2.75626 2.97647 3.23214 3.49960 3.73378 3.81570 4.00112 4.07740 4.16286 4.26141 4.38082 4.48000 4.54802 4.66144 4.67576 4.89098 4.91652 5.05079 5.10030 5.35584 5.46802 5.57582 5.63500 5.97823 6.06027 6.10559 6.18224 6.51528 8.19421 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.024474 B = 0.006231 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.800559 B = 4492.631137 C = 5035.708066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.109 3.891 3 Si 0.825 3.175 4 H -0.238 1.238 5 H -0.220 1.220 6 H -0.228 1.228 7 C -1.038 5.038 8 H 0.105 0.895 9 S 2.698 3.302 10 O -1.025 7.025 11 O -1.022 7.022 12 N -1.096 6.096 13 C 0.165 3.835 14 H 0.082 0.918 15 C 0.049 3.951 16 O -0.385 6.385 17 C 0.092 3.908 18 C -0.120 4.120 19 C -0.112 4.112 20 C -0.112 4.112 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.103 4.103 24 H 0.291 0.709 25 H 0.421 0.579 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.138 0.862 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.670 -15.712 -1.545 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.108 4.108 3 Si 0.642 3.358 4 H -0.161 1.161 5 H -0.142 1.142 6 H -0.151 1.151 7 C -1.170 5.170 8 H 0.123 0.877 9 S 2.798 3.202 10 O -1.015 7.015 11 O -1.011 7.011 12 N -0.856 5.856 13 C 0.057 3.943 14 H 0.100 0.900 15 C -0.030 4.030 16 O -0.302 6.302 17 C 0.016 3.984 18 C -0.121 4.121 19 C -0.129 4.129 20 C -0.130 4.130 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.104 4.104 24 H 0.102 0.898 25 H 0.256 0.744 26 H 0.119 0.881 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.150 0.850 30 H 0.178 0.822 31 H 0.174 0.826 32 H 0.156 0.844 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.927 -14.761 -1.911 17.356 hybrid contribution -0.839 0.598 0.835 1.327 sum 8.088 -14.163 -1.076 16.345 Atomic orbital electron populations 1.70009 1.07502 1.30513 1.40236 1.25161 0.95620 1.01450 0.88543 0.87493 0.82878 0.82767 0.82700 1.16079 1.14214 1.15071 1.30939 1.17899 1.01657 1.66556 0.87708 1.00550 0.75768 0.71352 0.72520 1.93446 1.85240 1.77148 1.45700 1.93393 1.84630 1.77124 1.45993 1.55105 1.73362 1.29738 1.27413 1.20105 0.99315 0.88627 0.86265 0.90006 1.23082 0.96510 0.92632 0.90786 1.87996 1.92593 1.15136 1.34523 1.21834 0.98510 0.84556 0.93492 1.20548 0.99511 0.93456 0.98552 1.21328 0.98465 0.96072 0.97057 1.21502 0.96635 0.99615 0.95243 1.21414 1.00268 0.92038 1.00855 1.21247 0.97850 0.98516 0.96566 1.19654 1.00021 0.93670 0.97090 0.89809 0.74416 0.88109 0.90176 0.89300 0.85035 0.82171 0.82650 0.84416 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.65 13.96 21.45 0.30 -49.35 16 2 C 0.11 6.30 5.47 84.66 0.46 6.76 16 3 Si 0.82 41.15 26.54 68.60 1.82 42.97 16 4 H -0.24 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.22 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.23 -11.65 5.61 99.48 0.56 -11.09 16 7 C -1.04 -58.51 10.11 67.73 0.69 -57.83 16 8 H 0.10 6.08 8.06 -2.91 -0.02 6.05 16 9 S 2.70 132.77 4.15 -56.49 -0.23 132.53 16 10 O -1.03 -54.02 16.02 -128.00 -2.05 -56.07 16 11 O -1.02 -53.01 16.31 -128.00 -2.09 -55.10 16 12 N -1.10 -41.52 4.75 -172.50 -0.82 -42.34 16 13 C 0.16 5.87 2.92 44.25 0.13 6.00 16 14 H 0.08 3.36 7.84 -2.39 -0.02 3.34 16 15 C 0.05 1.52 6.45 71.97 0.46 1.98 16 16 O -0.39 -11.12 10.77 -148.98 -1.60 -12.72 16 17 C 0.09 1.88 6.67 71.22 0.48 2.36 16 18 C -0.12 -2.89 5.80 -19.86 -0.12 -3.00 16 19 C -0.11 -2.04 9.67 22.32 0.22 -1.83 16 20 C -0.11 -2.10 10.05 22.23 0.22 -1.88 16 21 C -0.13 -3.09 10.05 22.24 0.22 -2.87 16 22 C -0.12 -3.82 9.22 22.32 0.21 -3.62 16 23 C -0.10 -3.17 5.50 -19.84 -0.11 -3.28 16 24 H 0.29 15.28 8.31 -92.71 -0.77 14.51 16 25 H 0.42 13.58 8.75 -96.75 -0.85 12.74 16 26 H 0.10 3.45 7.86 -2.39 -0.02 3.43 16 27 H 0.08 2.11 8.08 -2.39 -0.02 2.09 16 28 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 31 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.11 3.81 7.72 -2.91 -0.02 3.79 16 Total: -1.00 -70.89 291.31 -1.67 -72.56 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.14 Total: 24.72 kcal Atomic # 6 Polarization: -60.06 SS G_CDS: 2.86 Total: -57.20 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -0.52 Total: -91.69 kcal Atomic # 8 Polarization: -118.15 SS G_CDS: -5.74 Total: -123.89 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.82 Total: 42.97 kcal Atomic # 16 Polarization: 132.77 SS G_CDS: -0.23 Total: 132.53 kcal Total: -70.89 -1.67 -72.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995528.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.796 kcal (2) G-P(sol) polarization free energy of solvation -70.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds