Wall clock time and date at job start Fri Apr 10 2020 14:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00540 * 2 1 4 4 H 1.48493 * 109.47213 * 270.00005 * 3 2 1 5 5 H 1.48506 * 109.47036 * 29.99794 * 3 2 1 6 6 H 1.48497 * 109.47094 * 149.99495 * 3 2 1 7 7 C 1.37882 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99736 * 0.02562 * 7 2 1 9 9 S 1.76197 * 120.00146 * 179.97438 * 7 2 1 10 10 O 1.42101 * 106.40013 * 66.46561 * 9 7 2 11 11 O 1.42095 * 106.40517 * 293.54185 * 9 7 2 12 12 N 1.65601 * 107.21599 * 180.02562 * 9 7 2 13 13 C 1.46495 * 119.99872 * 65.00564 * 12 9 7 14 14 H 1.08997 * 110.27131 * 334.37630 * 13 12 9 15 15 C 1.54344 * 110.38315 * 212.24635 * 13 12 9 16 16 C 1.54353 * 102.38706 * 214.69094 * 15 13 12 17 17 C 1.51366 * 105.16054 * 26.34041 * 16 15 13 18 18 C 1.38165 * 109.78188 * 342.81488 * 17 16 15 19 19 C 1.38496 * 119.88558 * 180.02562 * 18 17 16 20 20 C 1.38176 * 120.33046 * 359.97438 * 19 18 17 21 21 C 1.38113 * 119.99627 * 0.28510 * 20 19 18 22 22 C 1.38645 * 119.87553 * 359.43705 * 21 20 19 23 23 O 1.35897 * 119.95629 * 180.25963 * 22 21 20 24 24 H 0.97006 * 119.99867 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99939 * 245.00048 * 12 9 7 26 26 H 1.09007 * 110.83034 * 332.91364 * 15 13 12 27 27 H 1.09002 * 110.82792 * 96.46584 * 15 13 12 28 28 H 1.09000 * 110.30125 * 145.26007 * 16 15 13 29 29 H 1.08993 * 110.30508 * 267.31957 * 16 15 13 30 30 H 1.08001 * 119.83323 * 179.97438 * 19 18 17 31 31 H 1.08002 * 119.99736 * 179.97438 * 20 19 18 32 32 H 1.08007 * 120.06416 * 179.69680 * 21 20 19 33 33 H 0.96706 * 114.00142 * 270.30136 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 16 3.7665 -1.1943 -0.0001 10 8 4.1682 -0.6491 1.2491 11 8 4.1673 -0.6507 -1.2503 12 7 4.2565 -2.7761 0.0000 13 6 3.9607 -3.6346 -1.1496 14 1 3.0793 -3.2696 -1.6767 15 6 3.7447 -5.0923 -0.6904 16 6 4.3338 -5.9005 -1.8661 17 6 5.3630 -4.9878 -2.4976 18 6 5.1490 -3.6863 -2.0861 19 6 5.9763 -2.6735 -2.5420 20 6 7.0161 -2.9578 -3.4065 21 6 7.2307 -4.2565 -3.8248 22 6 6.4086 -5.2745 -3.3665 23 8 6.6216 -6.5537 -3.7729 24 1 -0.4850 0.8401 -0.0004 25 1 4.7394 -3.1342 0.7613 26 1 4.2917 -5.2937 0.2307 27 1 2.6831 -5.3063 -0.5665 28 1 4.8093 -6.8101 -1.4991 29 1 3.5524 -6.1465 -2.5851 30 1 5.8080 -1.6564 -2.2202 31 1 7.6577 -2.1638 -3.7590 32 1 8.0401 -4.4792 -4.5044 33 1 6.1458 -6.7945 -4.5796 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193008344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:29 Heat of formation + Delta-G solvation = -98.846101 kcal Electronic energy + Delta-G solvation = -20413.842445 eV Core-core repulsion = 17145.256967 eV Total energy + Delta-G solvation = -3268.585478 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29156 -37.52361 -35.64392 -35.53013 -34.46655 -33.10722 -32.84804 -29.53566 -28.63828 -26.48272 -25.90861 -22.52267 -20.98357 -20.74638 -19.23667 -18.07770 -17.48918 -16.68330 -16.22041 -15.65023 -15.32485 -15.18628 -14.85965 -14.30563 -13.88351 -13.59275 -13.29045 -12.99053 -12.80272 -12.30896 -12.25066 -11.96629 -11.68077 -11.43505 -11.20113 -11.07900 -10.90053 -10.68250 -10.63958 -10.51260 -10.41164 -9.85026 -9.29498 -9.23873 -8.72092 -8.47863 -8.36807 -6.83455 -5.37899 1.41232 1.42998 2.06210 3.05484 3.15761 3.24917 3.75438 3.92875 4.20612 4.32322 4.52416 4.57952 4.72781 5.06104 5.19421 5.24391 5.29098 5.38340 5.61221 5.70901 5.73111 5.89212 6.00698 6.03650 6.09803 6.16796 6.25510 6.48916 6.60206 6.70321 6.85784 7.00760 7.44295 7.66836 7.71083 8.16552 8.67388 10.28725 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.029076 B = 0.005702 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.766565 B = 4908.990983 C = 5342.570915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.153 3.847 3 Si 0.802 3.198 4 H -0.246 1.246 5 H -0.256 1.256 6 H -0.220 1.220 7 C -1.016 5.016 8 H 0.121 0.879 9 S 2.672 3.328 10 O -1.009 7.009 11 O -1.007 7.007 12 N -1.114 6.114 13 C 0.197 3.803 14 H 0.110 0.890 15 C -0.123 4.123 16 C -0.075 4.075 17 C -0.120 4.120 18 C -0.089 4.089 19 C -0.098 4.098 20 C -0.112 4.112 21 C -0.146 4.146 22 C 0.102 3.898 23 O -0.500 6.500 24 H 0.281 0.719 25 H 0.407 0.593 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.677 -10.418 -6.358 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.066 4.066 3 Si 0.622 3.378 4 H -0.169 1.169 5 H -0.180 1.180 6 H -0.142 1.142 7 C -1.151 5.151 8 H 0.139 0.861 9 S 2.774 3.226 10 O -0.999 6.999 11 O -0.997 6.997 12 N -0.868 5.868 13 C 0.089 3.911 14 H 0.128 0.872 15 C -0.162 4.162 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.091 4.091 19 C -0.116 4.116 20 C -0.130 4.130 21 C -0.165 4.165 22 C 0.058 3.942 23 O -0.310 6.310 24 H 0.091 0.909 25 H 0.239 0.761 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.166 0.834 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 9.342 -9.537 -5.996 14.635 hybrid contribution -0.525 0.316 -0.194 0.642 sum 8.818 -9.222 -6.190 14.181 Atomic orbital electron populations 1.69986 1.06604 1.29081 1.39492 1.24425 0.94786 0.98831 0.88589 0.87847 0.83576 0.84493 0.81837 1.16944 1.17960 1.14235 1.30442 1.15539 1.02184 1.66890 0.86054 1.01434 0.77359 0.70471 0.73342 1.93481 1.85512 1.75824 1.45071 1.93367 1.84822 1.76110 1.45411 1.55604 1.73633 1.31416 1.26120 1.20171 0.94747 0.91315 0.84910 0.87224 1.22652 1.02304 0.93065 0.98223 1.20939 0.95921 0.97535 0.96807 1.20830 0.95989 0.95733 0.99548 1.20991 0.97373 0.92814 0.97962 1.21310 0.93389 1.01058 0.95871 1.20980 0.98098 0.95927 0.98005 1.21264 1.00756 0.92566 1.01876 1.17973 0.94843 0.83626 0.97764 1.84807 1.72445 1.26332 1.47384 0.90879 0.76121 0.90161 0.89425 0.90439 0.90076 0.83400 0.85547 0.85693 0.76155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.38 13.96 55.43 0.77 -22.61 16 2 C 0.15 4.32 5.47 -17.82 -0.10 4.23 16 3 Si 0.80 20.29 26.54 -169.99 -4.51 15.78 16 4 H -0.25 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.26 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.22 -5.68 5.60 56.52 0.32 -5.36 16 7 C -1.02 -27.53 10.16 30.60 0.31 -27.22 16 8 H 0.12 3.29 8.06 -52.48 -0.42 2.87 16 9 S 2.67 64.38 4.17 -107.50 -0.45 63.93 16 10 O -1.01 -26.65 16.02 -57.17 -0.92 -27.56 16 11 O -1.01 -25.21 14.20 -57.17 -0.81 -26.02 16 12 N -1.11 -20.74 5.52 -4.99 -0.03 -20.77 16 13 C 0.20 3.30 3.38 -68.04 -0.23 3.07 16 14 H 0.11 1.94 7.93 -51.93 -0.41 1.53 16 15 C -0.12 -1.60 6.77 -25.32 -0.17 -1.77 16 16 C -0.07 -0.89 6.71 -26.85 -0.18 -1.07 16 17 C -0.12 -1.72 6.11 -104.06 -0.64 -2.36 16 18 C -0.09 -1.48 5.79 -104.22 -0.60 -2.08 16 19 C -0.10 -1.68 9.86 -39.51 -0.39 -2.07 16 20 C -0.11 -1.59 10.04 -39.65 -0.40 -1.99 16 21 C -0.15 -1.90 9.98 -39.48 -0.39 -2.29 16 22 C 0.10 1.37 6.70 -39.17 -0.26 1.11 16 23 O -0.50 -5.67 13.45 -19.42 -0.26 -5.93 16 24 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.41 6.53 8.65 -34.47 -0.30 6.24 16 26 H 0.08 0.96 7.88 -51.93 -0.41 0.55 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.15 2.83 5.69 -52.49 -0.30 2.53 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.38 2.53 9.06 45.56 0.41 2.94 16 LS Contribution 290.77 15.07 4.38 4.38 Total: -1.00 -33.21 290.77 -7.63 -40.84 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -2.76 Total: 10.40 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: -3.05 Total: -32.44 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.75 Total: -43.38 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -1.99 Total: -59.52 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.51 Total: 15.78 kcal Atomic # 16 Polarization: 64.38 SS G_CDS: -0.45 Total: 63.93 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.21 -7.63 -40.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193008344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.005 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds