Wall clock time and date at job start Fri Apr 10 2020 14:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00540 * 2 1 4 4 H 1.48493 * 109.47213 * 270.00005 * 3 2 1 5 5 H 1.48506 * 109.47036 * 29.99794 * 3 2 1 6 6 H 1.48497 * 109.47094 * 149.99495 * 3 2 1 7 7 C 1.37882 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99736 * 0.02562 * 7 2 1 9 9 S 1.76197 * 120.00146 * 179.97438 * 7 2 1 10 10 O 1.42101 * 106.40013 * 66.46561 * 9 7 2 11 11 O 1.42095 * 106.40517 * 293.54185 * 9 7 2 12 12 N 1.65601 * 107.21599 * 180.02562 * 9 7 2 13 13 C 1.46495 * 119.99872 * 65.00564 * 12 9 7 14 14 H 1.08997 * 110.27131 * 334.37630 * 13 12 9 15 15 C 1.54344 * 110.38315 * 212.24635 * 13 12 9 16 16 C 1.54353 * 102.38706 * 214.69094 * 15 13 12 17 17 C 1.51366 * 105.16054 * 26.34041 * 16 15 13 18 18 C 1.38165 * 109.78188 * 342.81488 * 17 16 15 19 19 C 1.38496 * 119.88558 * 180.02562 * 18 17 16 20 20 C 1.38176 * 120.33046 * 359.97438 * 19 18 17 21 21 C 1.38113 * 119.99627 * 0.28510 * 20 19 18 22 22 C 1.38645 * 119.87553 * 359.43705 * 21 20 19 23 23 O 1.35897 * 119.95629 * 180.25963 * 22 21 20 24 24 H 0.97006 * 119.99867 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99939 * 245.00048 * 12 9 7 26 26 H 1.09007 * 110.83034 * 332.91364 * 15 13 12 27 27 H 1.09002 * 110.82792 * 96.46584 * 15 13 12 28 28 H 1.09000 * 110.30125 * 145.26007 * 16 15 13 29 29 H 1.08993 * 110.30508 * 267.31957 * 16 15 13 30 30 H 1.08001 * 119.83323 * 179.97438 * 19 18 17 31 31 H 1.08002 * 119.99736 * 179.97438 * 20 19 18 32 32 H 1.08007 * 120.06416 * 179.69680 * 21 20 19 33 33 H 0.96706 * 114.00142 * 270.30136 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 16 3.7665 -1.1943 -0.0001 10 8 4.1682 -0.6491 1.2491 11 8 4.1673 -0.6507 -1.2503 12 7 4.2565 -2.7761 0.0000 13 6 3.9607 -3.6346 -1.1496 14 1 3.0793 -3.2696 -1.6767 15 6 3.7447 -5.0923 -0.6904 16 6 4.3338 -5.9005 -1.8661 17 6 5.3630 -4.9878 -2.4976 18 6 5.1490 -3.6863 -2.0861 19 6 5.9763 -2.6735 -2.5420 20 6 7.0161 -2.9578 -3.4065 21 6 7.2307 -4.2565 -3.8248 22 6 6.4086 -5.2745 -3.3665 23 8 6.6216 -6.5537 -3.7729 24 1 -0.4850 0.8401 -0.0004 25 1 4.7394 -3.1342 0.7613 26 1 4.2917 -5.2937 0.2307 27 1 2.6831 -5.3063 -0.5665 28 1 4.8093 -6.8101 -1.4991 29 1 3.5524 -6.1465 -2.5851 30 1 5.8080 -1.6564 -2.2202 31 1 7.6577 -2.1638 -3.7590 32 1 8.0401 -4.4792 -4.5044 33 1 6.1458 -6.7945 -4.5796 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193008344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:28 Heat of formation + Delta-G solvation = -125.798474 kcal Electronic energy + Delta-G solvation = -20415.011188 eV Core-core repulsion = 17145.256967 eV Total energy + Delta-G solvation = -3269.754221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37657 -38.56281 -37.63318 -36.64050 -36.46974 -35.20200 -34.21632 -30.64760 -29.71747 -28.57715 -27.13200 -23.58526 -22.07886 -21.89419 -21.15519 -19.45870 -19.10939 -18.57929 -17.46948 -17.14722 -16.70316 -16.50073 -16.07924 -15.73613 -15.58015 -15.09346 -14.94782 -14.66346 -14.02838 -13.87421 -13.42570 -13.34716 -13.06370 -12.99647 -12.78779 -12.67851 -12.59213 -12.40558 -12.10069 -11.84790 -11.72981 -11.48894 -11.34155 -11.15734 -10.36829 -9.59669 -9.44225 -8.97086 -7.52652 0.09293 0.34687 0.38697 1.04630 1.13838 1.21230 1.88542 2.41264 2.53054 2.71086 3.27658 3.35742 3.42862 3.66647 4.01373 4.08309 4.14069 4.24016 4.39829 4.43221 4.61625 4.66776 4.87304 4.94036 5.04031 5.08794 5.19490 5.29471 5.38682 5.45316 5.56661 5.69233 5.93396 6.00793 6.27512 6.53565 6.91893 8.20247 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.029076 B = 0.005702 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.766565 B = 4908.990983 C = 5342.570915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.110 3.890 3 Si 0.824 3.176 4 H -0.238 1.238 5 H -0.222 1.222 6 H -0.231 1.231 7 C -1.036 5.036 8 H 0.109 0.891 9 S 2.694 3.306 10 O -1.033 7.033 11 O -1.019 7.019 12 N -1.100 6.100 13 C 0.184 3.816 14 H 0.090 0.910 15 C -0.118 4.118 16 C -0.067 4.067 17 C -0.124 4.124 18 C -0.113 4.113 19 C -0.132 4.132 20 C -0.113 4.113 21 C -0.142 4.142 22 C 0.109 3.891 23 O -0.501 6.501 24 H 0.291 0.709 25 H 0.420 0.580 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.907 -12.097 -7.232 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.107 4.107 3 Si 0.642 3.358 4 H -0.161 1.161 5 H -0.144 1.144 6 H -0.153 1.153 7 C -1.169 5.169 8 H 0.128 0.872 9 S 2.794 3.206 10 O -1.023 7.023 11 O -1.008 7.008 12 N -0.859 5.859 13 C 0.077 3.923 14 H 0.108 0.892 15 C -0.157 4.157 16 C -0.104 4.104 17 C -0.125 4.125 18 C -0.115 4.115 19 C -0.150 4.150 20 C -0.131 4.131 21 C -0.160 4.160 22 C 0.064 3.936 23 O -0.314 6.314 24 H 0.101 0.899 25 H 0.255 0.745 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 10.536 -11.216 -6.877 16.856 hybrid contribution -0.857 0.692 -0.001 1.101 sum 9.679 -10.525 -6.877 15.867 Atomic orbital electron populations 1.70008 1.07401 1.30434 1.40429 1.25129 0.95595 1.01354 0.88629 0.87497 0.82806 0.82946 0.82594 1.16103 1.14441 1.15348 1.30954 1.17853 1.01755 1.66304 0.87246 1.00608 0.75821 0.71691 0.72458 1.93436 1.85321 1.77478 1.46111 1.93357 1.84384 1.77365 1.45730 1.55131 1.73253 1.29989 1.27507 1.20458 0.94563 0.93014 0.84292 0.89177 1.22697 1.03477 0.90245 0.99303 1.20977 0.95775 0.97276 0.96422 1.21077 0.96716 0.95109 0.99590 1.20985 0.97617 0.93998 0.98912 1.21274 0.95610 0.99977 0.98178 1.21187 0.97382 0.97387 0.97130 1.21572 1.01107 0.91741 1.01586 1.18054 0.94029 0.84504 0.97002 1.84751 1.72873 1.24912 1.48883 0.89862 0.74522 0.88980 0.88260 0.88615 0.88274 0.86350 0.83656 0.82809 0.73389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.00 13.96 21.45 0.30 -48.70 16 2 C 0.11 6.27 5.47 84.66 0.46 6.73 16 3 Si 0.82 41.06 26.54 68.60 1.82 42.88 16 4 H -0.24 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.22 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.23 -11.88 5.60 99.48 0.56 -11.32 16 7 C -1.04 -57.47 10.16 67.74 0.69 -56.78 16 8 H 0.11 6.13 8.06 -2.91 -0.02 6.11 16 9 S 2.69 132.15 4.17 -56.49 -0.24 131.92 16 10 O -1.03 -55.20 16.02 -128.00 -2.05 -57.25 16 11 O -1.02 -52.21 14.20 -128.00 -1.82 -54.03 16 12 N -1.10 -41.30 5.52 -169.70 -0.94 -42.23 16 13 C 0.18 6.15 3.38 44.92 0.15 6.31 16 14 H 0.09 3.31 7.93 -2.39 -0.02 3.29 16 15 C -0.12 -2.85 6.77 31.51 0.21 -2.64 16 16 C -0.07 -1.40 6.71 30.52 0.20 -1.20 16 17 C -0.12 -3.28 6.11 -19.50 -0.12 -3.40 16 18 C -0.11 -3.70 5.79 -19.60 -0.11 -3.81 16 19 C -0.13 -4.55 9.86 22.32 0.22 -4.33 16 20 C -0.11 -3.06 10.04 22.23 0.22 -2.84 16 21 C -0.14 -3.28 9.98 22.34 0.22 -3.05 16 22 C 0.11 2.59 6.70 22.54 0.15 2.74 16 23 O -0.50 -9.33 13.45 -92.39 -1.24 -10.57 16 24 H 0.29 15.08 8.31 -92.70 -0.77 14.31 16 25 H 0.42 13.39 8.65 -96.75 -0.84 12.55 16 26 H 0.09 1.99 7.88 -2.38 -0.02 1.98 16 27 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.12 4.72 5.69 -2.91 -0.02 4.71 16 31 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 33 H 0.41 3.61 9.06 -74.05 -0.67 2.94 16 Total: -1.00 -71.89 290.77 -2.35 -74.24 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.49 Total: 26.03 kcal Atomic # 6 Polarization: -64.58 SS G_CDS: 2.31 Total: -62.27 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -0.64 Total: -90.94 kcal Atomic # 8 Polarization: -116.75 SS G_CDS: -5.11 Total: -121.86 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.82 Total: 42.88 kcal Atomic # 16 Polarization: 132.15 SS G_CDS: -0.24 Total: 131.92 kcal Total: -71.89 -2.35 -74.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193008344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.562 kcal (2) G-P(sol) polarization free energy of solvation -71.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds