Wall clock time and date at job start Fri Apr 10 2020 14:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 119.99513 * 2 1 4 4 H 1.48498 * 109.46998 * 269.99683 * 3 2 1 5 5 H 1.48497 * 109.47122 * 30.00283 * 3 2 1 6 6 H 1.48503 * 109.47023 * 150.00255 * 3 2 1 7 7 C 1.38945 * 120.00541 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99880 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00287 * 180.02562 * 7 2 1 10 10 C 1.34778 * 120.00015 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00155 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00115 * 179.97438 * 10 9 7 13 13 N 1.46493 * 109.47082 * 179.97438 * 12 10 9 14 14 C 1.34784 * 119.99864 * 180.02562 * 13 12 10 15 15 O 1.21588 * 119.99858 * 359.72927 * 14 13 12 16 16 C 1.47497 * 120.00007 * 179.72945 * 14 13 12 17 17 C 1.36685 * 126.82773 * 180.02562 * 16 14 13 18 18 C 1.42165 * 103.79107 * 179.97438 * 17 16 14 19 19 C 1.48236 * 126.85111 * 180.02562 * 18 17 16 20 20 O 1.21413 * 119.99383 * 0.02562 * 19 18 17 21 21 O 1.34646 * 120.00060 * 180.02562 * 19 18 17 22 22 N 1.30994 * 106.30672 * 0.02562 * 18 17 16 23 23 O 1.20870 * 111.80505 * 359.71689 * 22 18 17 24 24 H 0.96993 * 120.00299 * 359.97438 * 1 2 3 25 25 H 0.96995 * 119.99871 * 359.97438 * 9 7 2 26 26 H 1.09007 * 109.46606 * 60.00104 * 12 10 9 27 27 H 1.09006 * 109.47204 * 300.00561 * 12 10 9 28 28 H 0.97000 * 120.00740 * 359.72841 * 13 12 10 29 29 H 1.08005 * 128.10867 * 0.02562 * 17 16 14 30 30 H 0.96705 * 116.99472 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4404 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0539 -2.3704 -0.0011 11 8 3.4475 -3.4209 -0.0020 12 6 5.5609 -2.3703 -0.0011 13 7 6.0492 -3.7515 -0.0017 14 6 7.3744 -3.9977 -0.0013 15 8 8.1644 -3.0735 -0.0053 16 6 7.8661 -5.3883 0.0042 17 6 9.1707 -5.7960 0.0057 18 6 9.0824 -7.2149 0.0119 19 6 10.2110 -8.1759 0.0164 20 8 11.3549 -7.7687 0.0154 21 8 9.9677 -9.5001 0.0215 22 7 7.8047 -7.5038 0.0127 23 8 7.1193 -6.5083 0.0138 24 1 -0.4850 0.8400 0.0004 25 1 3.8649 -0.3631 0.0004 26 1 5.9241 -1.8572 0.8895 27 1 5.9242 -1.8556 -0.8906 28 1 5.4190 -4.4888 0.0020 29 1 10.0604 -5.1836 0.0037 30 1 10.7358 -10.0876 0.0247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610623037.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:19 Heat of formation + Delta-G solvation = -85.701561 kcal Electronic energy + Delta-G solvation = -20671.900109 eV Core-core repulsion = 16857.591406 eV Total energy + Delta-G solvation = -3814.308703 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.65734 -40.59001 -39.93704 -38.43594 -36.73864 -35.01653 -34.49754 -33.93258 -32.61134 -31.87080 -28.35311 -26.31094 -25.01661 -23.67732 -22.82737 -20.85336 -19.91222 -19.29543 -18.49776 -18.43436 -18.41788 -17.07018 -16.40304 -16.12893 -16.12499 -15.59515 -15.42408 -14.95266 -14.37500 -14.15786 -14.03099 -13.94685 -13.22646 -12.62633 -12.40846 -12.31895 -12.24183 -12.23636 -11.53474 -11.29542 -11.17168 -10.69883 -10.64833 -10.29253 -10.11941 -9.76985 -9.26505 -8.88430 -8.37717 -6.46577 -3.99834 0.22861 0.64723 1.99248 2.14511 2.27505 2.70966 2.93895 2.94894 2.99469 3.08839 3.44742 3.45960 3.97959 4.18987 4.37616 4.46808 4.56608 4.87047 5.07204 5.27266 5.49045 5.61359 5.62280 5.76852 6.12087 7.04768 7.22873 7.37321 7.45544 7.78885 7.95366 8.36939 8.75098 9.22377 9.54095 10.65294 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.050737 B = 0.002839 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.731184 B = 9858.963735 C =10395.532920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.046 3.954 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.312 4.312 8 H 0.123 0.877 9 N -0.573 5.573 10 C 0.434 3.566 11 O -0.576 6.576 12 C 0.104 3.896 13 N -0.686 5.686 14 C 0.604 3.396 15 O -0.513 6.513 16 C -0.068 4.068 17 C -0.101 4.101 18 C -0.027 4.027 19 C 0.576 3.424 20 O -0.490 6.490 21 O -0.496 6.496 22 N -0.284 5.284 23 O 0.160 5.840 24 H 0.276 0.724 25 H 0.375 0.625 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.421 0.579 29 H 0.199 0.801 30 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.509 -10.421 0.027 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.140 0.860 9 N -0.210 5.210 10 C 0.220 3.780 11 O -0.460 6.460 12 C -0.023 4.023 13 N -0.340 5.340 14 C 0.385 3.615 15 O -0.390 6.390 16 C -0.134 4.134 17 C -0.123 4.123 18 C -0.183 4.183 19 C 0.416 3.584 20 O -0.375 6.375 21 O -0.308 6.308 22 N 0.023 4.977 23 O 0.071 5.929 24 H 0.087 0.913 25 H 0.208 0.792 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.260 0.740 29 H 0.216 0.784 30 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 17.816 -11.172 0.023 21.029 hybrid contribution 1.290 1.173 0.020 1.743 sum 19.105 -9.999 0.043 21.564 Atomic orbital electron populations 1.69611 1.05747 1.27935 1.47703 1.25079 0.95539 0.98224 0.97016 0.86669 0.79904 0.83730 0.79163 1.19351 1.19948 1.19190 1.19447 0.78842 0.96868 1.48841 0.85969 1.42104 1.07759 1.06071 1.65072 1.19508 0.87770 0.85047 0.85668 1.90571 1.68980 1.30782 1.55713 1.21142 0.94477 0.82549 1.04134 1.45586 1.06074 1.10578 1.71713 1.16317 0.83063 0.83777 0.78308 1.90901 1.55590 1.41767 1.50697 1.24295 0.90860 0.89610 1.08615 1.22778 0.98294 0.91640 0.99627 1.22187 0.91004 0.93035 1.12030 1.18990 0.85875 0.81057 0.72435 1.90961 1.21665 1.79660 1.45214 1.84595 1.44190 1.16935 1.85066 1.74290 1.04206 1.08170 1.10987 1.85062 1.33588 1.10039 1.64251 0.91285 0.79182 0.88867 0.88824 0.73977 0.78423 0.71738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.21 13.96 55.50 0.77 -23.43 16 2 C 0.05 1.19 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 18.19 27.74 -169.99 -4.71 13.47 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -4.97 6.52 56.52 0.37 -4.60 16 7 C -0.31 -8.24 10.16 -14.93 -0.15 -8.39 16 8 H 0.12 3.70 7.39 -52.48 -0.39 3.31 16 9 N -0.57 -12.48 5.09 -10.96 -0.06 -12.53 16 10 C 0.43 8.79 7.85 -10.99 -0.09 8.70 16 11 O -0.58 -13.68 15.24 5.54 0.08 -13.59 16 12 C 0.10 1.55 6.15 -5.20 -0.03 1.52 16 13 N -0.69 -9.48 5.52 -62.54 -0.35 -9.82 16 14 C 0.60 7.84 7.82 -12.48 -0.10 7.74 16 15 O -0.51 -7.72 16.91 5.29 0.09 -7.63 16 16 C -0.07 -0.77 7.28 -36.37 -0.26 -1.03 16 17 C -0.10 -1.03 10.77 -38.64 -0.42 -1.45 16 18 C -0.03 -0.29 7.22 -82.61 -0.60 -0.89 16 19 C 0.58 5.60 8.36 34.84 0.29 5.89 16 20 O -0.49 -5.61 17.73 -19.20 -0.34 -5.95 16 21 O -0.50 -3.55 13.44 -40.34 -0.54 -4.09 16 22 N -0.28 -3.32 12.09 33.36 0.40 -2.92 16 23 O 0.16 1.82 11.01 15.61 0.17 1.99 16 24 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.37 7.10 5.76 -40.82 -0.24 6.87 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.42 5.88 7.26 -40.82 -0.30 5.58 16 29 H 0.20 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.42 0.73 9.11 45.56 0.42 1.14 16 LS Contribution 292.76 15.07 4.41 4.41 Total: -1.00 -32.85 292.76 -2.45 -35.30 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -0.94 Total: 11.59 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -1.45 Total: 13.19 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.78 Total: -48.71 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.54 Total: -29.27 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -4.71 Total: 13.47 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.85 -2.45 -35.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623037.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.397 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds