Wall clock time and date at job start Fri Apr 10 2020 14:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 119.99513 * 2 1 4 4 H 1.48498 * 109.46998 * 269.99683 * 3 2 1 5 5 H 1.48497 * 109.47122 * 30.00283 * 3 2 1 6 6 H 1.48503 * 109.47023 * 150.00255 * 3 2 1 7 7 C 1.38945 * 120.00541 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99880 * 359.97438 * 7 2 1 9 9 N 1.37102 * 120.00287 * 180.02562 * 7 2 1 10 10 C 1.34778 * 120.00015 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00155 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00115 * 179.97438 * 10 9 7 13 13 N 1.46493 * 109.47082 * 179.97438 * 12 10 9 14 14 C 1.34784 * 119.99864 * 180.02562 * 13 12 10 15 15 O 1.21588 * 119.99858 * 359.72927 * 14 13 12 16 16 C 1.47497 * 120.00007 * 179.72945 * 14 13 12 17 17 C 1.36685 * 126.82773 * 180.02562 * 16 14 13 18 18 C 1.42165 * 103.79107 * 179.97438 * 17 16 14 19 19 C 1.48236 * 126.85111 * 180.02562 * 18 17 16 20 20 O 1.21413 * 119.99383 * 0.02562 * 19 18 17 21 21 O 1.34646 * 120.00060 * 180.02562 * 19 18 17 22 22 N 1.30994 * 106.30672 * 0.02562 * 18 17 16 23 23 O 1.20870 * 111.80505 * 359.71689 * 22 18 17 24 24 H 0.96993 * 120.00299 * 359.97438 * 1 2 3 25 25 H 0.96995 * 119.99871 * 359.97438 * 9 7 2 26 26 H 1.09007 * 109.46606 * 60.00104 * 12 10 9 27 27 H 1.09006 * 109.47204 * 300.00561 * 12 10 9 28 28 H 0.97000 * 120.00740 * 359.72841 * 13 12 10 29 29 H 1.08005 * 128.10867 * 0.02562 * 17 16 14 30 30 H 0.96705 * 116.99472 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4404 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0539 -2.3704 -0.0011 11 8 3.4475 -3.4209 -0.0020 12 6 5.5609 -2.3703 -0.0011 13 7 6.0492 -3.7515 -0.0017 14 6 7.3744 -3.9977 -0.0013 15 8 8.1644 -3.0735 -0.0053 16 6 7.8661 -5.3883 0.0042 17 6 9.1707 -5.7960 0.0057 18 6 9.0824 -7.2149 0.0119 19 6 10.2110 -8.1759 0.0164 20 8 11.3549 -7.7687 0.0154 21 8 9.9677 -9.5001 0.0215 22 7 7.8047 -7.5038 0.0127 23 8 7.1193 -6.5083 0.0138 24 1 -0.4850 0.8400 0.0004 25 1 3.8649 -0.3631 0.0004 26 1 5.9241 -1.8572 0.8895 27 1 5.9242 -1.8556 -0.8906 28 1 5.4190 -4.4888 0.0020 29 1 10.0604 -5.1836 0.0037 30 1 10.7358 -10.0876 0.0247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610623037.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:03:18 Heat of formation + Delta-G solvation = -114.200456 kcal Electronic energy + Delta-G solvation = -20673.135914 eV Core-core repulsion = 16857.591406 eV Total energy + Delta-G solvation = -3815.544508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.52280 -41.31234 -41.14201 -40.02459 -37.41412 -36.36875 -35.72613 -35.24420 -33.82795 -33.49782 -29.70997 -27.11220 -26.62851 -24.80450 -23.73462 -21.73596 -21.47870 -20.73948 -19.93939 -19.30994 -19.21220 -17.88093 -17.68718 -17.36110 -16.91156 -16.90727 -16.74395 -16.45481 -15.56647 -15.54468 -15.06900 -14.81806 -14.64444 -14.29668 -14.02813 -13.69699 -13.24829 -12.94014 -12.89723 -12.40997 -12.30982 -12.01389 -11.97444 -11.72792 -11.54524 -11.18716 -10.64091 -10.39003 -10.27655 -8.42337 -6.04686 -0.65045 -0.17155 1.16057 1.33206 1.34837 1.37688 1.47738 1.48712 1.71863 1.83719 1.94388 2.23999 2.62980 2.86029 3.14243 3.37070 3.54898 3.68833 4.00859 4.15515 4.42816 4.43852 4.51794 4.97410 5.20975 5.50595 5.91446 6.08157 6.45364 6.50821 6.70930 6.74956 6.82054 7.32130 7.81828 8.74059 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.050737 B = 0.002839 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.731184 B = 9858.963735 C =10395.532920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.960 3.040 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.227 1.227 7 C -0.330 4.330 8 H 0.063 0.937 9 N -0.577 5.577 10 C 0.443 3.557 11 O -0.614 6.614 12 C 0.116 3.884 13 N -0.691 5.691 14 C 0.615 3.385 15 O -0.530 6.530 16 C -0.074 4.074 17 C -0.087 4.087 18 C -0.031 4.031 19 C 0.584 3.416 20 O -0.509 6.509 21 O -0.493 6.493 22 N -0.296 5.296 23 O 0.157 5.843 24 H 0.280 0.720 25 H 0.393 0.607 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.420 0.580 29 H 0.215 0.785 30 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.568 -9.503 0.074 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.210 4.210 3 Si 0.780 3.220 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.150 1.150 7 C -0.459 4.459 8 H 0.081 0.919 9 N -0.217 5.217 10 C 0.231 3.769 11 O -0.500 6.500 12 C -0.011 4.011 13 N -0.344 5.344 14 C 0.399 3.601 15 O -0.407 6.407 16 C -0.139 4.139 17 C -0.109 4.109 18 C -0.186 4.186 19 C 0.425 3.575 20 O -0.396 6.396 21 O -0.307 6.307 22 N 0.011 4.989 23 O 0.068 5.932 24 H 0.090 0.910 25 H 0.230 0.770 26 H 0.138 0.862 27 H 0.139 0.861 28 H 0.259 0.741 29 H 0.232 0.768 30 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges 20.915 -10.298 0.072 23.313 hybrid contribution 0.346 0.647 0.001 0.734 sum 21.261 -9.651 0.072 23.349 Atomic orbital electron populations 1.69784 1.08168 1.29435 1.49385 1.26097 0.96412 1.02726 0.95749 0.85435 0.79729 0.76852 0.80033 1.18155 1.20260 1.15018 1.19020 0.81076 0.95194 1.50637 0.91907 1.41899 1.06039 1.07520 1.66228 1.20516 0.90137 0.83859 0.82422 1.90564 1.70799 1.32335 1.56334 1.21100 0.89600 0.83721 1.06668 1.45596 1.06515 1.10123 1.72215 1.16253 0.82307 0.84179 0.77395 1.90896 1.55793 1.42516 1.51493 1.23990 0.91123 0.88978 1.09820 1.23006 0.98355 0.91581 0.98005 1.22446 0.91013 0.93668 1.11522 1.18807 0.85108 0.81645 0.71967 1.90959 1.22178 1.80140 1.46345 1.84556 1.45789 1.16111 1.84290 1.74284 1.04763 1.08326 1.11486 1.85058 1.33677 1.10035 1.64474 0.91002 0.77036 0.86248 0.86142 0.74141 0.76810 0.69023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.50 13.96 21.66 0.30 -53.19 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 0.96 36.36 27.74 68.60 1.90 38.26 16 4 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.23 -7.09 6.52 99.48 0.65 -6.44 16 7 C -0.33 -18.02 10.16 84.04 0.85 -17.16 16 8 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 9 N -0.58 -24.62 5.09 -306.98 -1.56 -26.18 16 10 C 0.44 17.56 7.85 87.66 0.69 18.24 16 11 O -0.61 -29.75 15.24 -3.08 -0.05 -29.80 16 12 C 0.12 3.12 6.15 85.63 0.53 3.65 16 13 N -0.69 -17.78 5.52 -470.04 -2.60 -20.38 16 14 C 0.62 14.61 7.82 86.68 0.68 15.29 16 15 O -0.53 -14.39 16.91 -3.99 -0.07 -14.46 16 16 C -0.07 -1.53 7.28 24.35 0.18 -1.35 16 17 C -0.09 -1.61 10.77 22.88 0.25 -1.36 16 18 C -0.03 -0.62 7.22 42.90 0.31 -0.31 16 19 C 0.58 10.27 8.36 70.48 0.59 10.86 16 20 O -0.51 -10.73 17.73 20.12 0.36 -10.38 16 21 O -0.49 -6.00 13.44 -55.55 -0.75 -6.75 16 22 N -0.30 -6.54 12.09 -49.00 -0.59 -7.14 16 23 O 0.16 3.39 11.01 66.06 0.73 4.12 16 24 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 25 H 0.39 13.72 5.76 -92.71 -0.53 13.19 16 26 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 27 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 28 H 0.42 11.36 7.26 -92.71 -0.67 10.69 16 29 H 0.22 3.17 8.06 -2.91 -0.02 3.14 16 30 H 0.45 0.47 9.11 -74.05 -0.67 -0.21 16 Total: -1.00 -74.26 292.76 1.54 -72.72 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.67 Total: 25.38 kcal Atomic # 6 Polarization: 23.25 SS G_CDS: 4.54 Total: 27.79 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -4.45 Total: -106.89 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: 0.22 Total: -57.26 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 1.90 Total: 38.26 kcal Total: -74.26 1.54 -72.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623037.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.479 kcal (2) G-P(sol) polarization free energy of solvation -74.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds