Wall clock time and date at job start Fri Apr 10 2020 14:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86794 * 120.00531 * 2 1 4 4 H 1.48496 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47121 * 300.00458 * 3 2 1 6 6 H 1.48506 * 109.46825 * 60.00135 * 3 2 1 7 7 C 1.40234 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99586 * 179.97438 * 7 2 1 9 9 C 1.40333 * 119.99968 * 0.27991 * 7 2 1 10 10 N 1.33312 * 126.55461 * 359.74696 * 9 7 2 11 11 C 1.33401 * 107.23863 * 180.02562 * 10 9 7 12 12 C 1.48345 * 125.67638 * 179.97438 * 11 10 9 13 13 C 1.39380 * 120.12306 * 359.72539 * 12 11 10 14 14 C 1.38012 * 119.86789 * 179.72056 * 13 12 11 15 15 C 1.38327 * 120.12755 * 0.55601 * 14 13 12 16 16 C 1.50703 * 119.87642 * 179.69956 * 15 14 13 17 17 F 1.39903 * 109.46835 * 270.01965 * 16 15 14 18 18 F 1.39898 * 109.47028 * 30.01994 * 16 15 14 19 19 F 1.39897 * 109.47015 * 150.02184 * 16 15 14 20 20 C 1.38343 * 120.24977 * 359.72033 * 15 14 13 21 21 C 1.38001 * 120.12150 * 0.02562 * 20 15 14 22 22 N 1.32053 * 108.64682 * 359.97438 * 11 10 9 23 23 N 1.28858 * 109.19801 * 359.71840 * 22 11 10 24 24 H 0.96991 * 125.99369 * 180.29378 * 23 22 11 25 25 H 0.97005 * 119.99585 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.06267 * 359.97438 * 13 12 11 27 27 H 1.08000 * 119.93406 * 180.27464 * 14 13 12 28 28 H 1.08003 * 119.93566 * 179.97438 * 20 15 14 29 29 H 1.08009 * 120.05816 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.7007 1.3462 0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3963 1.2126 7 6 2.0077 -1.2145 0.0005 8 1 3.0877 -1.2145 0.0001 9 6 1.3059 -2.4298 -0.0049 10 7 -0.0185 -2.5818 -0.0060 11 6 -0.2659 -3.8927 -0.0111 12 6 -1.6105 -4.5193 -0.0135 13 6 -2.7538 -3.7221 -0.0047 14 6 -4.0021 -4.3106 -0.0128 15 6 -4.1199 -5.6889 -0.0181 16 6 -5.4859 -6.3255 -0.0202 17 9 -5.9083 -6.5272 1.2983 18 9 -6.3912 -5.4849 -0.6765 19 9 -5.4260 -7.5555 -0.6840 20 6 -2.9886 -6.4851 -0.0211 21 6 -1.7352 -5.9075 -0.0183 22 7 0.8853 -4.5396 -0.0135 23 7 1.8509 -3.6864 -0.0162 24 1 2.7976 -3.8969 -0.0224 25 1 -0.4850 0.8401 0.0004 26 1 -2.6629 -2.6460 0.0044 27 1 -4.8887 -3.6939 -0.0105 28 1 -3.0865 -7.5606 -0.0248 29 1 -0.8527 -6.5301 -0.0202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004344019.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:05 Heat of formation + Delta-G solvation = -57.253244 kcal Electronic energy + Delta-G solvation = -20880.800027 eV Core-core repulsion = 16969.010210 eV Total energy + Delta-G solvation = -3911.789817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.05458 -47.57675 -47.51616 -41.13424 -38.80975 -33.80987 -32.74696 -31.00668 -30.57218 -29.58604 -26.28836 -25.50765 -22.58419 -22.32048 -20.72291 -19.75512 -18.38841 -18.22092 -18.20709 -17.64421 -16.30888 -15.47151 -14.87222 -14.56948 -14.45934 -14.32435 -14.25826 -14.10240 -13.98797 -13.75767 -13.69174 -13.24866 -13.02836 -12.56435 -12.45340 -11.82500 -11.37604 -11.26009 -10.91074 -10.86109 -10.40863 -10.05728 -9.72249 -9.53918 -8.75370 -8.36873 -8.26968 -7.67687 -6.69977 -4.74358 1.08960 1.63294 2.80356 2.89077 3.03846 3.07565 3.31639 3.83823 3.84200 3.88077 4.17381 4.36399 4.50990 4.66668 5.05890 5.12069 5.20291 5.29174 5.64716 5.73372 6.00199 6.12719 6.39892 6.45393 6.54311 6.98347 7.05322 7.13476 7.33492 7.91720 8.06675 8.32897 8.65750 8.93216 10.05178 10.24478 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.031665 B = 0.003796 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.048786 B = 7375.084370 C = 8084.627307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.082 3.918 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.087 0.913 9 C 0.362 3.638 10 N -0.516 5.516 11 C 0.183 3.817 12 C 0.071 3.929 13 C -0.089 4.089 14 C -0.075 4.075 15 C -0.202 4.202 16 C 0.511 3.489 17 F -0.181 7.181 18 F -0.180 7.180 19 F -0.182 7.182 20 C -0.076 4.076 21 C -0.107 4.107 22 N -0.380 5.380 23 N -0.482 5.482 24 H 0.424 0.576 25 H 0.277 0.723 26 H 0.151 0.849 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 -6.702 -0.034 9.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.496 4.496 8 H 0.105 0.895 9 C 0.111 3.889 10 N -0.249 5.249 11 C -0.094 4.094 12 C 0.068 3.932 13 C -0.110 4.110 14 C -0.093 4.093 15 C -0.204 4.204 16 C 0.457 3.543 17 F -0.162 7.162 18 F -0.162 7.162 19 F -0.163 7.163 20 C -0.095 4.095 21 C -0.127 4.127 22 N -0.220 5.220 23 N -0.202 5.202 24 H 0.266 0.734 25 H 0.088 0.912 26 H 0.169 0.831 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.826 -7.052 -0.036 9.815 hybrid contribution 0.960 0.688 -0.006 1.181 sum -5.866 -6.364 -0.042 8.656 Atomic orbital electron populations 1.69953 1.07103 1.28362 1.30354 1.25766 0.94901 1.00676 0.93056 0.86111 0.80407 0.80693 0.78601 1.18554 1.19801 1.19800 1.18303 0.93869 0.87221 1.50238 0.89505 1.21520 0.87751 0.86042 0.93630 1.72241 1.11309 1.11428 1.29896 1.21925 0.90899 0.90190 1.06357 1.17872 0.89626 0.91947 0.93775 1.21369 0.89979 1.01855 0.97752 1.20813 0.98573 0.92376 0.97560 1.19880 0.91033 0.95534 1.13952 1.18381 0.86423 0.76053 0.73485 1.93206 1.91525 1.95085 1.36413 1.93169 1.70332 1.71311 1.81350 1.93161 1.96681 1.45406 1.81048 1.20710 0.91188 0.99564 0.98004 1.21182 0.97077 0.94240 1.00248 1.73785 0.96485 1.21253 1.30438 1.44956 1.07632 1.05057 1.62521 0.73371 0.91183 0.83143 0.84968 0.85151 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.69 11.94 55.56 0.66 -18.03 15 2 C 0.08 1.98 5.50 -17.30 -0.10 1.88 15 3 Si 0.92 17.61 29.56 -169.99 -5.03 12.58 15 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 7 C -0.45 -11.28 9.47 -38.04 -0.36 -11.64 15 8 H 0.09 1.95 7.85 -52.49 -0.41 1.54 15 9 C 0.36 9.36 7.70 -155.72 -1.20 8.16 15 10 N -0.52 -13.80 9.27 -10.43 -0.10 -13.90 15 11 C 0.18 4.43 7.75 -156.69 -1.21 3.22 15 12 C 0.07 1.42 5.88 -104.89 -0.62 0.81 15 13 C -0.09 -1.65 9.69 -39.24 -0.38 -2.03 15 14 C -0.07 -1.16 9.38 -39.63 -0.37 -1.53 15 15 C -0.20 -2.98 5.46 -104.55 -0.57 -3.55 15 16 C 0.51 6.89 3.36 36.01 0.12 7.02 15 17 F -0.18 -2.47 17.30 2.25 0.04 -2.43 15 18 F -0.18 -2.43 16.45 2.25 0.04 -2.39 15 19 F -0.18 -2.39 16.45 2.25 0.04 -2.35 15 20 C -0.08 -1.12 9.38 -39.63 -0.37 -1.49 15 21 C -0.11 -1.83 9.68 -39.25 -0.38 -2.21 15 22 N -0.38 -8.91 11.92 32.07 0.38 -8.52 15 23 N -0.48 -10.99 7.07 31.13 0.22 -10.77 15 24 H 0.42 7.95 8.96 -190.21 -1.70 6.24 15 25 H 0.28 6.38 8.29 -40.82 -0.34 6.04 15 26 H 0.15 2.98 7.84 -52.49 -0.41 2.57 15 27 H 0.13 1.74 7.59 -52.49 -0.40 1.34 15 28 H 0.13 1.57 7.59 -52.48 -0.40 1.17 15 29 H 0.14 2.25 7.84 -52.48 -0.41 1.84 15 LS Contribution 280.50 15.07 4.23 4.23 Total: -1.00 -28.45 280.50 -7.82 -36.27 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -2.87 Total: 6.67 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -5.44 Total: -1.36 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 1.17 Total: -51.22 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.11 Total: -7.17 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.45 -7.82 -36.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004344019.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.983 kcal (2) G-P(sol) polarization free energy of solvation -28.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds