Wall clock time and date at job start Fri Apr 10 2020 14:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00359 * 2 1 4 4 H 1.48507 * 109.46961 * 270.00105 * 3 2 1 5 5 H 1.48501 * 109.47068 * 29.99865 * 3 2 1 6 6 H 1.48500 * 109.47320 * 149.99971 * 3 2 1 7 7 C 1.37884 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99953 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99804 * 0.02562 * 7 2 1 10 10 S 1.81406 * 109.46896 * 179.97438 * 9 7 2 11 11 O 1.42097 * 108.57377 * 65.51837 * 10 9 7 12 12 O 1.42098 * 108.57950 * 294.48658 * 10 9 7 13 13 C 1.81403 * 101.92088 * 179.97438 * 10 9 7 14 14 C 1.50701 * 109.47200 * 180.02562 * 13 10 9 15 15 O 1.21287 * 119.99646 * 0.02562 * 14 13 10 16 16 N 1.34773 * 119.99846 * 180.02562 * 14 13 10 17 17 C 1.39924 * 119.99818 * 185.27752 * 16 14 13 18 18 C 1.38873 * 120.07282 * 33.33155 * 17 16 14 19 19 C 1.38106 * 119.93058 * 179.97438 * 18 17 16 20 20 C 1.38280 * 120.07473 * 359.97438 * 19 18 17 21 21 C 1.38282 * 120.13715 * 0.04477 * 20 19 18 22 22 C 1.38106 * 120.07234 * 359.95443 * 21 20 19 23 23 H 0.97002 * 119.99740 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47137 * 60.00013 * 9 7 2 25 25 H 1.08995 * 109.47659 * 299.99927 * 9 7 2 26 26 H 1.09004 * 109.47239 * 60.00056 * 13 10 9 27 27 H 1.09003 * 109.47376 * 300.00756 * 13 10 9 28 28 H 0.97000 * 120.00137 * 5.27364 * 16 14 13 29 29 H 1.08005 * 120.03105 * 359.70896 * 18 17 16 30 30 H 1.08007 * 119.96089 * 179.97438 * 19 18 17 31 31 H 1.07997 * 119.92979 * 179.97438 * 20 19 18 32 32 H 1.08001 * 119.96391 * 179.97438 * 21 20 19 33 33 H 1.08003 * 120.03629 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.1481 -3.8593 1.2264 12 8 3.1483 -3.8594 -1.2252 13 6 1.3241 -5.3162 0.0013 14 6 2.1443 -6.5804 0.0021 15 8 3.3556 -6.5174 0.0025 16 7 1.5320 -7.7810 0.0022 17 6 2.2889 -8.9524 0.1143 18 6 3.4515 -8.9597 0.8740 19 6 4.1961 -10.1177 0.9831 20 6 3.7850 -11.2693 0.3374 21 6 2.6281 -11.2653 -0.4201 22 6 1.8790 -10.1105 -0.5332 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6239 -2.5567 0.8902 26 1 0.6950 -5.2913 -0.8885 27 1 0.6955 -5.2908 0.8915 28 1 0.5665 -7.8330 -0.0754 29 1 3.7752 -8.0595 1.3754 30 1 5.1005 -10.1238 1.5734 31 1 4.3693 -12.1734 0.4239 32 1 2.3098 -12.1662 -0.9236 33 1 0.9757 -10.1079 -1.1253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031944632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:02:23 Heat of formation + Delta-G solvation = -79.190136 kcal Electronic energy + Delta-G solvation = -19340.809194 eV Core-core repulsion = 16073.076062 eV Total energy + Delta-G solvation = -3267.733132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67927 -38.57885 -36.01295 -35.13129 -34.90750 -33.38101 -31.16863 -31.05405 -29.17677 -28.73779 -23.70492 -23.20949 -22.62802 -20.69565 -18.37748 -17.84366 -17.37929 -16.89541 -16.37446 -15.99920 -15.50877 -15.23032 -14.99278 -14.52494 -14.33503 -14.15725 -13.66903 -13.51858 -13.11450 -12.52761 -12.49318 -12.18694 -11.89560 -11.43913 -11.41750 -11.11286 -11.06252 -10.91238 -10.66121 -10.61579 -10.45721 -10.16258 -9.82388 -9.15512 -9.09157 -8.73674 -8.32479 -6.36774 -4.46002 0.78096 1.08087 1.24590 2.37104 2.78218 3.21776 3.27030 3.34194 3.66721 3.71872 4.17956 4.29375 4.57864 4.71129 4.78549 4.85239 4.99662 5.00025 5.23169 5.26397 5.36409 5.38352 5.42534 5.84465 6.11351 6.15616 6.31623 6.40474 6.56876 6.61172 6.85624 7.06294 7.45710 7.70808 7.82565 8.56180 9.21473 10.75185 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.054406 B = 0.003471 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.525041 B = 8065.872113 C = 8330.540534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.074 0.926 9 C -0.404 4.404 10 S 2.421 3.579 11 O -0.940 6.940 12 O -0.940 6.940 13 C -0.677 4.677 14 C 0.545 3.455 15 O -0.505 6.505 16 N -0.670 5.670 17 C 0.147 3.853 18 C -0.123 4.123 19 C -0.099 4.099 20 C -0.138 4.138 21 C -0.103 4.103 22 C -0.147 4.147 23 H 0.269 0.731 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.157 0.843 27 H 0.158 0.842 28 H 0.414 0.586 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 -19.439 0.490 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.092 0.908 9 C -0.539 4.539 10 S 2.601 3.399 11 O -0.937 6.937 12 O -0.937 6.937 13 C -0.799 4.799 14 C 0.331 3.669 15 O -0.379 6.379 16 N -0.315 5.315 17 C 0.053 3.947 18 C -0.143 4.143 19 C -0.118 4.118 20 C -0.157 4.157 21 C -0.121 4.121 22 C -0.168 4.168 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.175 0.825 27 H 0.176 0.824 28 H 0.250 0.750 29 H 0.156 0.844 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.344 -19.312 0.505 19.322 hybrid contribution -1.321 0.668 -0.112 1.485 sum -1.665 -18.644 0.393 18.723 Atomic orbital electron populations 1.69940 1.06261 1.27795 1.47909 1.24932 0.95056 0.99625 0.93475 0.86327 0.80067 0.81528 0.78810 1.19864 1.20637 1.18963 1.20367 0.93109 0.88260 1.55109 0.90795 1.27601 1.09867 1.09680 1.06770 1.08638 0.78888 0.77037 0.75384 1.93472 1.69000 1.85343 1.45921 1.93477 1.68977 1.85326 1.45930 1.31229 1.19518 1.16188 1.12978 1.19622 0.87967 0.84021 0.75252 1.90869 1.13505 1.86678 1.46818 1.43455 1.10802 1.04097 1.73195 1.17808 0.94047 0.85951 0.96886 1.21307 0.95004 0.99524 0.98426 1.21084 0.99395 0.92218 0.99074 1.21146 0.97241 0.98386 0.98938 1.20923 0.94964 0.97464 0.98785 1.20890 1.02064 0.92703 1.01094 0.92171 0.89577 0.89548 0.82459 0.82374 0.74961 0.84370 0.85538 0.85978 0.85707 0.85662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.34 13.29 55.43 0.74 -23.60 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.53 -14.48 9.13 -34.44 -0.31 -14.79 16 8 H 0.07 2.03 7.71 -52.49 -0.40 1.62 16 9 C -0.40 -9.25 5.56 36.00 0.20 -9.05 16 10 S 2.42 50.77 3.88 -107.50 -0.42 50.35 16 11 O -0.94 -22.69 17.94 -59.55 -1.07 -23.76 16 12 O -0.94 -22.87 17.95 -59.50 -1.07 -23.94 16 13 C -0.68 -9.50 6.29 36.01 0.23 -9.28 16 14 C 0.54 8.64 7.59 -10.99 -0.08 8.56 16 15 O -0.50 -10.19 13.31 2.55 0.03 -10.15 16 16 N -0.67 -7.98 5.34 -9.86 -0.05 -8.04 16 17 C 0.15 1.85 6.28 -83.69 -0.53 1.33 16 18 C -0.12 -1.68 8.66 -39.39 -0.34 -2.02 16 19 C -0.10 -1.11 10.04 -39.61 -0.40 -1.50 16 20 C -0.14 -1.30 10.04 -39.55 -0.40 -1.70 16 21 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 22 C -0.15 -1.47 9.96 -39.39 -0.39 -1.86 16 23 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.09 1.88 8.14 -51.92 -0.42 1.45 16 25 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 26 H 0.16 1.63 8.14 -51.92 -0.42 1.21 16 27 H 0.16 1.64 8.14 -51.92 -0.42 1.22 16 28 H 0.41 3.22 8.82 -40.82 -0.36 2.86 16 29 H 0.14 2.15 6.41 -52.48 -0.34 1.82 16 30 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 307.66 15.07 4.64 4.64 Total: -1.00 -37.00 307.66 -8.36 -45.36 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -3.62 Total: 2.98 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -2.52 Total: -29.70 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.68 Total: -31.64 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -2.10 Total: -57.86 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 50.77 SS G_CDS: -0.42 Total: 50.35 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -37.00 -8.36 -45.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031944632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.827 kcal (2) G-P(sol) polarization free energy of solvation -37.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds